Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0008370 Simmondsia chinensis HOM05D000992 ORTHO05D001928 1.6e-103 379.4 185 100.0
Dinv14423 Davidia involucrata HOM05D000992 ORTHO05D001928 1.5e-58 229.9 183 62.3
TAR371G0875 Trochodendron aralioides HOM05D000992 ORTHO05D001928 3.8e-57 225.3 179 63.1
CSS0018449 Camellia sinensis var. sinensis HOM05D000992 ORTHO05D001928 8.4e-57 224.2 179 63.1
PGR119G0308 Punica granatum HOM05D000992 ORTHO05D001928 1.6e-55 219.9 172 65.1
Dinv07657 Davidia involucrata HOM05D000269 ORTHO05D000216 1.0e-54 217.2 174 63.2
Medtr4g084650 Medicago truncatula HOM05D000992 ORTHO05D001928 6.7e-54 214.5 182 58.8
AUR62023333 Chenopodium quinoa HOM05D000992 ORTHO05D001928 8.7e-54 214.2 172 61.6
arahy.Tifrunner.gnm1.ann1.FYKT6P Arachis hypogaea HOM05D000992 ORTHO05D001928 1.9e-53 213.0 176 58.5
CiPaw.06G011200 Carya illinoinensis HOM05D000992 ORTHO05D001928 2.5e-53 212.6 178 60.7
Ca_18738_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 2.5e-53 212.6 174 60.3
Ca_30875_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 2.5e-53 212.6 174 60.3
Nn4g24190 Nelumbo nucifera HOM05D000992 ORTHO05D001928 7.4e-53 211.1 176 60.8
Cfa008618 Carpinus fangiana HOM05D000992 ORTHO05D001928 1.3e-52 210.3 172 60.5
EL10Ac1g00687 Beta vulgaris HOM05D000992 ORTHO05D001928 1.6e-52 209.9 169 60.9
Hund17156 Selenicereus undatus HOM05D000992 ORTHO05D001928 2.4e-51 206.1 200 55.0
PGSC0003DMG400006156 Solanum tuberosum HOM05D000992 ORTHO05D001928 5.3e-51 204.9 173 60.7
vmacro00410 Vaccinium macrocarpon HOM05D000992 ORTHO05D001928 6.9e-51 204.5 180 60.0
arahy.Tifrunner.gnm1.ann1.MZBU3F Arachis hypogaea HOM05D000992 ORTHO05D001928 1.2e-50 203.8 186 54.8
Actinidia18442 Actinidia chinensis HOM05D000992 ORTHO05D001928 1.5e-50 203.4 170 61.2
Actinidia04063 Actinidia chinensis HOM05D000992 ORTHO05D001928 3.4e-50 202.2 171 58.5
HanXRQChr11g0320951 Helianthus annuus HOM05D000992 ORTHO05D001928 3.4e-50 202.2 169 57.4
SGA_v2.0_scaffold39G15183 Striga asiatica HOM05D000992 ORTHO05D001928 4.5e-50 201.8 172 59.9
Potri.008G130300 Populus trichocarpa HOM05D000992 ORTHO05D001928 1.3e-49 200.3 172 60.5
AUR62038000 Chenopodium quinoa HOM05D000992 ORTHO05D001928 2.2e-49 199.5 165 60.6
Lj5g0010526 Lotus japonicus HOM05D000992 ORTHO05D001928 3.8e-49 198.7 174 58.0
Aqoxy7G00061 Aquilegia oxysepala HOM05D000992 ORTHO05D001928 5.0e-49 198.4 171 57.9
Nitab4.5_0007845g0030 Nicotiana tabacum HOM05D000992 ORTHO05D001928 6.5e-49 198.0 172 57.6
Manes.17G077900 Manihot esculenta HOM05D000992 ORTHO05D001928 8.5e-49 197.6 183 56.3
TPR.G27486 Trifolium pratense HOM05D000992 ORTHO05D001928 8.5e-49 197.6 182 56.0
CSS0042156 Camellia sinensis var. sinensis HOM05D000992 ORTHO05D001928 3.2e-48 195.7 139 68.3
Thecc.02G282800 Theobroma cacao HOM05D000992 ORTHO05D001928 4.2e-48 195.3 180 55.6
Hma1.2p1_1764F.1_g301400 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 7.2e-48 194.5 171 56.7
TAR629G1759 Trochodendron aralioides HOM05D000992 ORTHO05D001928 9.3e-48 194.1 172 59.3
Lsat_1_v5_gn_1_4261 Lactuca sativa HOM05D000992 ORTHO05D001928 2.1e-47 193.0 167 57.5
Ah.05g177390 Amaranthus hybridus HOM05D000992 ORTHO05D001928 2.7e-47 192.6 165 57.0
Hma1.2p1_1346F.1_g277200 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 2.7e-47 192.6 171 56.1
Sabra08G0098900 Salix brachista HOM05D000992 ORTHO05D001928 7.9e-47 191.0 173 57.2
ECA232G2145 Erigeron canadensis HOM05D000992 ORTHO05D001928 1.0e-46 190.7 173 54.9
Phvul.002G095100 Phaseolus vulgaris HOM05D000992 ORTHO05D001928 1.0e-46 190.7 185 54.6
Migut.E00433 Erythranthe guttata HOM05D000992 ORTHO05D001928 1.3e-46 190.3 172 56.4
HanXRQChr02g0044681 Helianthus annuus HOM05D000992 ORTHO05D001928 1.3e-46 190.3 169 55.6
Glyma.07G218700 Glycine max HOM05D000992 ORTHO05D001928 1.8e-46 189.9 176 54.5
Nitab4.5_0000441g0190 Nicotiana tabacum HOM05D000992 ORTHO05D001928 1.8e-46 189.9 172 55.2
Lsat_1_v5_gn_9_43601 Lactuca sativa HOM05D000992 ORTHO05D001928 3.9e-46 188.7 167 53.9
Lalb_Chr05g0219541 Lupinus albus HOM05D000992 ORTHO05D001928 3.9e-46 188.7 180 53.9
VMungo0251G1193 Vigna mungo HOM05D000992 ORTHO05D001928 6.7e-46 188.0 185 53.5
CDE02G4261 Ceratophyllum demersum HOM05D000992 ORTHO05D001928 1.1e-45 187.2 171 52.6
TWI75G1486 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 1.5e-45 186.8 180 55.0
Lalb_Chr16g0385011 Lupinus albus HOM05D000992 ORTHO05D001928 2.5e-45 186.0 178 54.5
MD13G1024400 Malus domestica HOM05D000992 ORTHO05D001928 2.5e-45 186.0 174 55.2
Haze_10992 Corylus avellana HOM05D000992 ORTHO05D001928 4.3e-45 185.3 172 57.0
Duzib251G0427 Durio zibethinus HOM05D000992 ORTHO05D001928 4.3e-45 185.3 171 53.8
ECA247G3162 Erigeron canadensis HOM05D000992 ORTHO05D001928 9.7e-45 184.1 169 53.8
ClCG11G001240 Citrullus lanatus HOM05D000992 ORTHO05D001928 1.6e-44 183.3 186 52.7
Eucgr.G02182 Eucalyptus grandis HOM05D000992 ORTHO05D001928 1.6e-44 183.3 174 54.0
Solyc07g047970.4 Solanum lycopersicum HOM05D000992 ORTHO05D001928 1.6e-44 183.3 176 56.2
Gorai.001G109900 Gossypium raimondii HOM05D000992 ORTHO05D001928 2.8e-44 182.6 175 53.1
Gohir.A07G097700 Gossypium hirsutum HOM05D000992 ORTHO05D001928 3.7e-44 182.2 175 53.1
Oeu005277.1 Olea europaea HOM05D000992 ORTHO05D001928 3.7e-44 182.2 172 53.5
Duzib248G0828 Durio zibethinus HOM05D000992 ORTHO05D001928 6.3e-44 181.4 171 54.4
Gohir.D07G102000 Gossypium hirsutum HOM05D000992 ORTHO05D001928 8.2e-44 181.0 175 52.6
SalBow8G2514 Salvia bowleyana HOM05D000992 ORTHO05D001928 8.2e-44 181.0 169 52.7
Sopen07g024400 Solanum pennellii HOM05D000992 ORTHO05D001928 8.2e-44 181.0 173 56.1
TWI31G0575 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 1.8e-43 179.9 176 54.5
CANSAT64G2027 Cannabis sativa HOM05D000992 ORTHO05D001928 5.3e-43 178.3 169 53.3
Rhsim06G0241000 Rhododendron simsii HOM05D000992 ORTHO05D001928 9.1e-43 177.6 175 54.3
Atru.chr11.373 Acer truncatum HOM05D000992 ORTHO05D001928 1.2e-42 177.2 176 52.3
COL.COLO4_13161 Corchorus olitorius HOM05D000992 ORTHO05D001928 4.5e-42 175.3 180 51.1
CsaV3_5G013310 Cucumis sativus L. HOM05D000992 ORTHO05D001928 1.0e-41 174.1 178 52.2
QL01p001467 Quercus lobata HOM05D000992 ORTHO05D001928 1.3e-41 173.7 171 54.4
Sabra10G0082200 Salix brachista HOM05D000992 ORTHO05D001928 6.5e-41 171.4 182 50.5
Manes.15G128400 Manihot esculenta HOM05D000992 ORTHO05D001928 1.1e-40 170.6 176 51.7
QL11p050299 Quercus lobata HOM05D000992 ORTHO05D001928 1.4e-40 170.2 171 52.0
Peaxi162Scf00776g00324 Petunia axillaris HOM05D000992 ORTHO05D001928 3.2e-40 169.1 173 50.9
QL02p040832 Quercus lobata HOM05D000992 ORTHO05D001928 3.2e-40 169.1 171 53.2
SHI03261 Sapria himalayana HOM05D000992 ORTHO05D001928 5.5e-40 168.3 173 49.1
MD16G1027100 Malus domestica HOM05D000992 ORTHO05D001928 1.2e-39 167.2 176 51.1
SalBow1G5429 Salvia bowleyana HOM05D000992 ORTHO05D001928 1.2e-39 167.2 170 53.5
MBI16_g37742_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 2.1e-39 166.4 176 51.1
PSO782G4161 Papaver somniferum HOM05D000992 ORTHO05D001928 2.7e-39 166.0 172 50.0
RcHm_v2.0_Chr4g0441451 Rosa chinensis HOM05D000992 ORTHO05D001928 2.7e-39 166.0 175 50.9
SalBow7G0291 Salvia bowleyana HOM05D000992 ORTHO05D001928 2.7e-39 166.0 170 52.4
PSO063G7085 Papaver somniferum HOM05D000992 ORTHO05D001928 4.6e-39 165.2 172 51.7
HPP92_027233 Vanilla planifolia HOM05D000992 ORTHO05D001928 1.0e-38 164.1 181 50.3
Cpa.g.sc65.153 Carica papaya HOM05D000992 ORTHO05D001928 3.0e-38 162.5 165 51.5
PSO478G1659 Papaver somniferum HOM05D000992 ORTHO05D001928 8.8e-38 161.0 172 48.3
HanXRQChr12g0377541 Helianthus annuus HOM05D000992 ORTHO05D001928 1.5e-37 160.2 169 49.7
PSO017G5972 Papaver somniferum HOM05D000992 ORTHO05D001928 2.0e-37 159.8 169 49.7
Potri.010G111800 Populus trichocarpa HOM05D000992 ORTHO05D001928 2.6e-37 159.5 178 49.4
THA.LOC104805068 Tarenaya hassleriana HOM05D000992 ORTHO05D001928 3.3e-37 159.1 169 47.9
unitig_22.g5587 Utricularia gibba HOM05D000992 ORTHO05D001928 3.3e-37 159.1 167 48.5
Peaxi162Scf00276g00615 Petunia axillaris HOM05D000992 ORTHO05D001928 4.4e-37 158.7 165 50.3
Actinidia04657 Actinidia chinensis HOM05D000992 ORTHO05D001928 7.4e-37 157.9 117 66.7
FAN07G2064 Fragaria x ananassa HOM05D000992 ORTHO05D001928 8.2e-36 154.5 166 48.2
MD08G1204700 Malus domestica HOM05D000992 ORTHO05D001928 8.2e-36 154.5 122 57.4
CARHR257330 Cardamine hirsuta HOM05D000992 ORTHO05D001928 1.4e-35 153.7 168 47.6
Cc11_g08530 Coffea canephora HOM05D000992 ORTHO05D001928 1.8e-35 153.3 191 46.6
FAN12G1857 Fragaria x ananassa HOM05D000992 ORTHO05D001928 2.4e-35 152.9 169 47.3
FvH4_4g32580 Fragaria vesca HOM05D000992 ORTHO05D001928 3.1e-35 152.5 166 47.0
Ciclev10015444m.g Citrus clementina HOM05D000992 ORTHO05D001928 4.1e-35 152.1 179 45.3
FAN17G2843 Fragaria x ananassa HOM05D000992 ORTHO05D001928 5.3e-35 151.8 166 47.6
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 4.5e-34 148.7 170 42.9
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 7.7e-34 147.9 176 40.9
Sp2g12920 Schrenkiella parvula HOM05D000992 ORTHO05D001928 1.0e-33 147.5 169 41.4
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 2.2e-33 146.4 176 41.5
Carub.0005s0043 Capsella rubella HOM05D000992 ORTHO05D001928 1.4e-32 143.7 174 43.7
BraA06t27316Z Brassica rapa HOM05D000992 ORTHO05D001928 2.5e-32 142.9 169 43.2
Sed0025111 Sechium edule HOM05D000992 ORTHO05D001928 4.2e-32 142.1 219 41.6
BcaC06g34176 Brassica carinata HOM05D000137 ORTHO05D001928 1.6e-31 140.2 169 43.2
C07p31890 Brassica napus HOM05D000992 ORTHO05D001928 1.6e-31 140.2 169 43.2
BolC7t43735H Brassica oleracea HOM05D000992 ORTHO05D001928 3.6e-31 139.0 169 42.6
A06p44420 Brassica napus HOM05D000992 ORTHO05D001928 3.0e-30 136.0 169 42.0
ATR0579G172 Amborella trichopoda HOM05D000992 ORTHO05D001928 4.4e-29 132.1 170 41.2
Zm00001eb166990 Zea mays HOM05D000992 ORTHO05D001928 8.2e-28 127.9 170 40.0
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 2.4e-27 126.3 182 39.6
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 3.1e-27 125.9 169 41.4
GSVIVG01011745001 Vitis vinifera HOM05D000992 ORTHO05D001928 3.1e-27 125.9 83 71.1
AT5G50550 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 4.1e-27 125.6 171 39.8
AT5G50650 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 4.1e-27 125.6 171 39.8
BcaC06g34175 Brassica carinata HOM05D000992 ORTHO05D001928 4.1e-27 125.6 177 41.2
MBI04_g44511_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 4.1e-27 125.6 86 67.4
AL5G10450 Arabidopsis lyrata HOM05D000992 ORTHO05D001928 5.3e-27 125.2 174 39.1
Lj4g0026372 Lotus japonicus HOM05D000992 ORTHO05D001928 5.3e-27 125.2 118 56.8
DCAR_007301 Daucus carota HOM05D000992 ORTHO05D001928 9.1e-27 124.4 169 43.2
DCAR_000389 Daucus carota HOM05D000992 ORTHO05D001928 1.6e-26 123.6 87 65.5
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 2.0e-26 123.2 169 37.3
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 2.0e-26 123.2 169 37.3
Thhalv10000916m.g Eutrema salsugineum HOM05D000992 ORTHO05D001928 3.5e-26 122.5 173 38.7
Rhsim03G0184800 Rhododendron simsii HOM05D000368 ORTHO05D000289 7.7e-26 121.3 86 65.1
AT2G01470 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 1.0e-25 120.9 174 38.5
Rhsim03G0186000 Rhododendron simsii HOM05D000992 ORTHO05D001928 1.3e-25 120.6 82 67.1
BcaC06g31305 Brassica carinata HOM05D000992 ORTHO05D001928 8.5e-25 117.9 171 40.4
SGA_v2.0_scaffold257G45690 Striga asiatica HOM05D000992 ORTHO05D001928 8.5e-25 117.9 82 64.6
Rhsim03G0184600 Rhododendron simsii HOM05D000992 ORTHO05D001928 9.4e-24 114.4 161 42.2
Os11g0610700 Oryza sativa ssp. japonica HOM05D000992 ORTHO05D001928 2.7e-23 112.8 173 35.3
Hma1.2p1_3119F.1_g332850 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 8.0e-23 111.3 114 52.6
DCAR_030227 Daucus carota HOM05D000992 ORTHO05D001928 5.2e-22 108.6 82 57.3
Pp3c22_1410 Physcomitrium patens HOM05D000992 ORTHO05D001928 1.2e-21 107.5 167 38.9
Prupe.1G326100 Prunus persica HOM05D000992 ORTHO05D001928 5.7e-21 105.1 69 71.0
Rhsim03G0185500 Rhododendron simsii HOM05D000992 ORTHO05D001928 1.7e-20 103.6 70 67.1
CiPaw.05G250700 Carya illinoinensis HOM05D000992 ORTHO05D001928 2.2e-20 103.2 69 66.7
SEGI_28359 Sequoiadendron giganteum HOM05D000992 ORTHO05D001928 7.0e-19 98.2 109 47.7
FAN10G0326 Fragaria x ananassa HOM05D000992 ORTHO05D001928 9.1e-19 97.8 115 46.1
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 1.6e-18 97.1 101 51.5
MBI07_g32656_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 4.5e-18 95.5 174 36.8
Mapoly0068s0040 Marchantia polymorpha HOM05D000992 ORTHO05D001928 3.8e-17 92.4 167 36.5
BcaB02g11084 Brassica carinata HOM05D000992 ORTHO05D001928 1.9e-16 90.1 120 37.5
FAN22G0786 Fragaria x ananassa HOM05D000992 ORTHO05D001928 1.9e-16 90.1 69 59.4
Pp3c21_8000 Physcomitrium patens HOM05D000992 ORTHO05D001928 6.1e-15 85.1 167 31.7
FAN10G1773 Fragaria x ananassa HOM05D000992 ORTHO05D001928 4.0e-14 82.4 178 35.4
CARHR143990 Cardamine hirsuta HOM05D000992 ORTHO05D001928 8.8e-14 81.3 81 50.6
Rhsim03G0185700 Rhododendron simsii HOM05D000368 ORTHO05D000289 2.0e-13 80.1 121 41.3
SMO119G0347 Selaginella moellendorffii HOM05D000992 ORTHO05D001928 3.4e-13 79.3 178 34.3
BcaB05g23416 Brassica carinata HOM05D000992 ORTHO05D001928 1.3e-12 77.4 67 52.2
SGA_v2.0_scaffold257G45692 Striga asiatica HOM05D000992 ORTHO05D001928 2.2e-12 76.6 87 44.8
Pp3c13_12620 Physcomitrium patens HOM05D000992 ORTHO05D001928 1.4e-11 73.9 120 37.5
Pp3c3_15480 Physcomitrium patens HOM05D000992 ORTHO05D001928 4.1e-11 72.4 120 37.5
AagrBONN_evm.TU.Sc2ySwM_228.3928 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.4e-11 72.0 119 36.1
AagrBONN_evm.TU.Sc2ySwM_117.3128 Anthoceros agrestis HOM05D000992 ORTHO05D001928 9.1e-11 71.2 124 36.3
Mapoly0009s0085 Marchantia polymorpha HOM05D000992 ORTHO05D001928 9.1e-11 71.2 123 38.2
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 1.0e-09 67.8 173 29.5
AagrBONN_evm.TU.Sc2ySwM_117.3805 Anthoceros agrestis HOM05D000992 ORTHO05D001928 1.3e-09 67.4 111 36.0
AagrBONN_evm.TU.Sc2ySwM_228.1087 Anthoceros agrestis HOM05D000992 ORTHO05D001928 1.3e-09 67.4 111 35.1
AagrBONN_evm.TU.Sc2ySwM_344.1223 Anthoceros agrestis HOM05D000992 ORTHO05D001928 1.3e-09 67.4 111 35.1
SEGI_21673 Sequoiadendron giganteum HOM05D000992 ORTHO05D001928 4.2e-08 62.4 119 35.3
Oeu033441.1 Olea europaea HOM05D000992 ORTHO05D001928 5.5e-08 62.0 50 60.0
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 2.1e-07 60.1 34 73.5
Potri.008G029200 Populus trichocarpa HOM05D000992 ORTHO05D001928 2.8e-07 59.7 121 33.9
TAR633G1854 Trochodendron aralioides HOM05D000992 ORTHO05D001928 4.7e-07 58.9 116 35.3
MBI17_g06174_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D011152 6.1e-07 58.5 31 77.4
arahy.Tifrunner.gnm1.ann1.M78ZSX Arachis hypogaea HOM05D000992 ORTHO05D001928 8.0e-07 58.2 107 34.6
arahy.Tifrunner.gnm1.ann1.IPCF80 Arachis hypogaea HOM05D000992 ORTHO05D001928 1.0e-06 57.8 113 34.5
Peaxi162Scf00321g00008 Petunia axillaris HOM05D000992 ORTHO05D001928 1.0e-06 57.8 106 34.0
HanXRQChr14g0456231 Helianthus annuus HOM05D000992 ORTHO05D001928 1.4e-06 57.4 142 33.8
MBI13_g11344_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 1.8e-06 57.0 31 74.2
Cpa.g.sc128.69 Carica papaya HOM05D000992 ORTHO05D001928 4.0e-06 55.8 137 34.3
TWI63G1207 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 4.0e-06 55.8 117 35.9
Lsat_1_v5_gn_2_103021 Lactuca sativa HOM05D000992 ORTHO05D001928 6.8e-06 55.1 142 33.8
Solyc11g007780.2 Solanum lycopersicum HOM05D000992 ORTHO05D001928 8.8e-06 54.7 108 31.5
Sopen11g003640 Solanum pennellii HOM05D000992 ORTHO05D001928 8.8e-06 54.7 108 31.5


User provided reference genes

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