Gene: AT5G50550

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G50550
  • Transcript Identifier AT5G50550.1
  • Gene Type Coding gene
  • Location Chr5 : 20576870-20578719 : positive

Gene Family Information

  • ID HOM05D000992
  • #Genes/#Species 608/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G50550.1

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G50650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003400
IBA
Gene Ontologyregulation of COPII vesicle coating1
GO:0009306
IBA
Gene Ontologyprotein secretion1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005096
IBA
Gene OntologyGTPase activator activity1
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030176
IBA
Gene Ontologyintegral component of endoplasmic reticulum membrane1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily
Mapman id Description
22.1.1.2.2 Vesicle trafficking.ER export trafficking.Coat protein II (COPII) coatomer machinery.coat protein recruiting.guanyl-nucleotide exchange factor (Sec12)