Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 2.4e-187 658.7 333 100.0
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 2.8e-183 645.2 333 97.9
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.4e-147 526.6 334 79.9
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.7e-145 519.6 333 79.9
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 5.1e-145 518.1 334 79.9
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 2.4e-142 509.2 333 77.5
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.7e-140 503.1 334 77.5
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 6.0e-138 494.6 333 75.1
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 8.7e-137 490.7 335 74.6
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.1e-136 490.3 335 72.8
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 2.1e-135 486.1 380 69.5
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.1e-134 483.8 336 73.8
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 3.1e-134 482.3 337 75.7
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 3.1e-134 482.3 334 74.0
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 5.3e-134 481.5 332 73.8
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 6.9e-134 481.1 338 73.4
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 2.6e-133 479.2 338 75.1
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 4.5e-133 478.4 334 72.2
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.7e-132 476.5 332 72.0
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 2.9e-132 475.7 332 72.9
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.9e-132 475.7 335 72.2
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 3.8e-132 475.3 342 73.7
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.4e-132 474.6 333 71.8
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.4e-131 473.4 332 71.7
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 3.2e-131 472.2 334 71.6
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 4.2e-131 471.9 335 71.9
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 9.3e-131 470.7 335 71.9
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 1.2e-130 470.3 335 71.6
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.2e-130 470.3 334 72.2
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.6e-130 469.9 335 71.6
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.6e-130 469.9 341 74.2
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 3.5e-130 468.8 341 73.3
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 3.5e-130 468.8 337 73.3
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 4.6e-130 468.4 335 71.3
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 6.0e-130 468.0 334 72.5
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.8e-129 466.5 341 72.7
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 1.8e-129 466.5 335 72.8
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 1.8e-129 466.5 336 71.4
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 2.3e-129 466.1 333 72.7
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 2.3e-129 466.1 335 72.2
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 5.1e-129 464.9 335 70.1
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 6.7e-129 464.5 334 71.3
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.6e-128 460.7 319 73.0
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 1.3e-127 460.3 335 71.3
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.1e-126 457.2 332 70.5
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.4e-126 456.8 337 72.1
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.9e-126 454.5 342 70.5
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.9e-126 454.5 342 70.5
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.2e-125 453.8 335 70.4
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 2.0e-125 453.0 342 71.1
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 5.8e-125 451.4 341 71.6
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 7.6e-125 451.1 337 70.3
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.3e-124 450.3 335 69.9
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 2.9e-124 449.1 338 68.6
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 2.9e-124 449.1 335 68.1
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.4e-123 446.8 335 68.4
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 1.4e-123 446.8 341 70.4
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.9e-123 446.4 336 69.0
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 5.5e-123 444.9 341 70.4
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 7.1e-123 444.5 335 68.4
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 7.1e-123 444.5 336 68.8
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 7.1e-123 444.5 334 67.7
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 9.3e-123 444.1 338 68.9
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 1.2e-122 443.7 338 68.9
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 3.5e-122 442.2 342 69.0
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 3.5e-122 442.2 344 68.9
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 3.5e-122 442.2 336 67.6
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 7.9e-122 441.0 336 68.5
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 7.9e-122 441.0 335 70.7
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.0e-121 440.7 338 68.3
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.3e-121 439.5 331 67.1
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.0e-121 439.1 341 69.8
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 6.7e-121 438.0 335 68.1
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 6.7e-121 438.0 336 68.5
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 7.4e-120 434.5 336 67.3
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 9.7e-120 434.1 326 69.3
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.3e-119 433.7 333 68.5
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 3.7e-119 432.2 333 66.7
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 4.8e-119 431.8 334 67.1
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 4.8e-119 431.8 331 67.4
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 8.2e-119 431.0 336 67.9
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 6.9e-118 427.9 342 67.3
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 6.9e-118 427.9 340 65.0
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.0e-117 426.4 331 65.9
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.5e-117 425.2 333 66.4
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 5.9e-117 424.9 328 67.1
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 5.9e-117 424.9 328 67.1
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.0e-116 424.1 355 62.8
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 2.9e-116 422.5 337 66.8
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 6.5e-116 421.4 325 67.7
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 1.1e-115 420.6 337 67.1
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.1e-114 416.4 331 65.0
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 4.6e-114 415.2 347 66.3
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 6.1e-114 414.8 343 66.8
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.0e-113 414.1 335 63.6
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.8e-113 413.3 342 64.9
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 6.7e-113 411.4 357 63.0
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 6.7e-113 411.4 357 63.0
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.5e-112 410.2 341 65.7
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 5.7e-112 408.3 341 65.1
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.3e-108 397.1 363 62.0
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 2.9e-108 396.0 343 63.8
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 4.7e-106 388.7 335 61.2
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 2.3e-105 386.3 333 61.9
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.5e-104 383.6 261 74.3
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.0e-100 370.9 357 59.9
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.3e-100 370.5 335 58.2
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 1.3e-100 370.5 363 59.2
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 2.2e-100 369.8 355 58.3
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 2.9e-100 369.4 355 57.5
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 1.2e-98 364.0 346 60.1
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 4.7e-98 362.1 285 68.1
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 3.3e-96 355.9 334 59.9
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.4e-94 350.5 355 54.6
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 3.1e-86 322.8 324 57.1
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 5.3e-86 322.0 325 56.0
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.1e-82 310.1 228 68.4
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 8.0e-74 281.6 210 68.6
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.6e-72 276.6 248 62.5
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 9.2e-70 268.1 354 46.3
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 5.2e-65 252.3 188 69.1
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 4.4e-64 249.2 258 54.7
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 4.6e-61 239.2 187 68.4
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 4.6e-61 239.2 269 56.1
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.6e-58 230.7 361 42.4
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 3.6e-58 229.6 383 41.5
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 7.5e-56 221.9 348 40.5
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 6.4e-55 218.8 351 41.9
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 2.7e-53 213.4 345 42.0
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 6.6e-52 208.8 215 56.3
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 8.1e-50 201.8 220 55.0
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 9.6e-43 178.3 176 51.1
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 2.0e-40 170.6 353 37.1
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.9e-35 154.1 373 34.0
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.3e-31 141.4 116 64.7
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 3.8e-31 139.8 349 35.0
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.4e-25 121.3 149 47.7
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 4.0e-25 119.8 364 33.0
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.7e-23 114.4 131 48.9
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 2.2e-23 114.0 106 52.8
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.1e-22 111.7 92 58.7
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 3.2e-22 110.2 120 53.3
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 7.1e-22 109.0 92 57.6
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.2e-21 108.2 85 63.5
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.1e-21 107.5 101 58.4
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 7.4e-19 99.0 151 36.4
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 3.4e-16 90.1 55 72.7
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.2e-13 81.6 144 37.5
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 2.1e-13 80.9 69 52.2
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 6.7e-12 75.9 41 82.9
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 4.3e-11 73.2 341 26.1
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.3e-10 71.6 83 51.8
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.1e-09 66.6 98 38.8
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 9.0e-09 65.5 167 28.1
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.2e-08 65.1 53 54.7
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-06 58.2 43 62.8


User provided reference genes

Program Settings