Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004650 Simmondsia chinensis HOM05D005508 ORTHO05D006882 6.0e-219 763.8 374 100.0
GSVIVG01032921001 Vitis vinifera HOM05D005508 ORTHO05D006882 1.5e-148 530.0 361 70.6
TAR371G0059 Trochodendron aralioides HOM05D005508 ORTHO05D006882 1.6e-142 510.0 352 69.9
Thecc.04G094900 Theobroma cacao HOM05D005508 ORTHO05D006882 5.0e-141 505.0 352 67.9
Rhsim10G0042800 Rhododendron simsii HOM05D005508 ORTHO05D006882 1.9e-140 503.1 344 68.6
Gorai.006G010700 Gossypium raimondii HOM05D005508 ORTHO05D006882 6.1e-139 498.0 352 67.6
COL.COLO4_07024 Corchorus olitorius HOM05D005508 ORTHO05D006882 1.0e-138 497.3 344 69.2
Gohir.D09G009000 Gossypium hirsutum HOM05D005508 ORTHO05D006882 1.0e-138 497.3 352 67.3
Gohir.A09G009900 Gossypium hirsutum HOM05D005508 ORTHO05D006882 1.8e-138 496.5 352 67.3
Nn4g23404 Nelumbo nucifera HOM05D005508 ORTHO05D006882 4.0e-138 495.4 353 68.3
QL10p049508 Quercus lobata HOM05D005508 ORTHO05D006882 5.2e-138 495.0 352 66.8
CiPaw.04G056000 Carya illinoinensis HOM05D005508 ORTHO05D006882 8.8e-138 494.2 347 67.7
Lj4A336G6 Lonicera japonica HOM05D005508 ORTHO05D006882 1.1e-135 487.3 352 66.2
PSO017G4331 Papaver somniferum HOM05D005508 ORTHO05D006882 7.0e-135 484.6 346 67.1
CSS0005994 Camellia sinensis var. sinensis HOM05D005508 ORTHO05D006882 2.7e-134 482.6 348 68.1
PSO478G0705 Papaver somniferum HOM05D005508 ORTHO05D006882 2.7e-134 482.6 346 66.8
PGSC0003DMG400001639 Solanum tuberosum HOM05D005508 ORTHO05D006882 7.7e-134 481.1 348 66.1
Cc07_g04170 Coffea canephora HOM05D005508 ORTHO05D006882 1.0e-133 480.7 347 65.7
Solyc02g088780.4 Solanum lycopersicum HOM05D005508 ORTHO05D006882 1.7e-133 479.9 347 65.4
Manes.02G054600 Manihot esculenta HOM05D005508 ORTHO05D006882 2.3e-133 479.6 344 66.0
TWI32G0965 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 2.9e-133 479.2 355 65.4
Sopen02g033500 Solanum pennellii HOM05D005508 ORTHO05D006882 5.0e-133 478.4 347 65.7
AT5G15550 Arabidopsis thaliana HOM05D005508 ORTHO05D006882 6.6e-133 478.0 344 65.7
CANSAT64G1484 Cannabis sativa HOM05D005508 ORTHO05D006882 6.6e-133 478.0 347 65.7
Prupe.3G255400 Prunus persica HOM05D005508 ORTHO05D006882 6.6e-133 478.0 338 68.3
Aqoxy3G02922 Aquilegia oxysepala HOM05D005508 ORTHO05D006882 1.9e-132 476.5 352 64.2
PGR083G1795 Punica granatum HOM05D005508 ORTHO05D006882 1.9e-132 476.5 344 66.6
PGSC0003DMG400001452 Solanum tuberosum HOM05D005508 ORTHO05D006882 1.9e-132 476.5 347 65.7
Phvul.004G035400 Phaseolus vulgaris HOM05D005508 ORTHO05D006882 5.5e-132 474.9 352 66.2
THA.LOC104820997 Tarenaya hassleriana HOM05D005508 ORTHO05D006882 5.5e-132 474.9 352 64.2
Glyma.05G027800 Glycine max HOM05D005508 ORTHO05D006882 2.8e-131 472.6 347 65.4
Peaxi162Scf00166g00526 Petunia axillaris HOM05D005508 ORTHO05D006882 2.8e-131 472.6 344 65.4
AL6G26410 Arabidopsis lyrata HOM05D005508 ORTHO05D006882 4.7e-131 471.9 344 64.8
DCAR_011042 Daucus carota HOM05D005508 ORTHO05D006882 4.7e-131 471.9 349 63.3
Ciclev10011739m.g Citrus clementina HOM05D005508 ORTHO05D006882 6.1e-131 471.5 352 64.2
Carub.0006s1373 Capsella rubella HOM05D005508 ORTHO05D006882 8.0e-131 471.1 344 64.5
Cpa.g.sc14.169 Carica papaya HOM05D005508 ORTHO05D006882 1.0e-130 470.7 352 62.2
MSTRG.3354 Avicennia marina HOM05D005508 ORTHO05D006882 1.4e-130 470.3 347 65.4
Glyma.19G029400 Glycine max HOM05D005508 ORTHO05D006882 1.4e-130 470.3 352 64.2
CAN.G588.15 Capsicum annuum HOM05D005508 ORTHO05D006882 1.8e-130 469.9 347 64.8
Potri.017G093300 Populus trichocarpa HOM05D005508 ORTHO05D006882 1.8e-130 469.9 347 65.1
Sabra17G0082300 Salix brachista HOM05D005508 ORTHO05D006882 1.8e-130 469.9 347 65.4
Sopen01g053090 Solanum pennellii HOM05D005508 ORTHO05D006882 3.0e-130 469.2 348 64.4
Nitab4.5_0003841g0090 Nicotiana tabacum HOM05D005508 ORTHO05D006882 5.2e-130 468.4 348 65.2
TPR.G10015 Trifolium pratense HOM05D005508 ORTHO05D006882 5.2e-130 468.4 349 64.8
Atru.chr8.461 Acer truncatum HOM05D005508 ORTHO05D006882 1.5e-129 466.8 367 62.1
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 1.5e-129 466.8 352 62.5
Glyma.13G056900 Glycine max HOM05D005508 ORTHO05D006882 2.6e-129 466.1 352 64.2
Haze_14435 Corylus avellana HOM05D005508 ORTHO05D006882 4.4e-129 465.3 376 62.2
Glyma.01G086000 Glycine max HOM05D005508 ORTHO05D006882 5.7e-129 464.9 352 64.2
MD09G1066100 Malus domestica HOM05D005508 ORTHO05D006882 2.8e-128 462.6 347 65.1
Psat1g067800 Pisum sativum HOM05D005508 ORTHO05D006882 8.3e-128 461.1 349 63.3
Hund05300 Selenicereus undatus HOM05D005508 ORTHO05D006882 8.3e-128 461.1 344 64.5
VMungo0464G0521 Vigna mungo HOM05D005508 ORTHO05D006882 8.3e-128 461.1 352 63.6
Ca_04302_v3 Cicer arietinum L. HOM05D005508 ORTHO05D006882 1.1e-127 460.7 344 64.5
Sabra04G0069200 Salix brachista HOM05D005508 ORTHO05D006882 1.4e-127 460.3 357 61.6
ECA232G0694 Erigeron canadensis HOM05D005508 ORTHO05D006882 2.4e-127 459.5 344 65.4
Lalb_Chr02g0158951 Lupinus albus HOM05D005508 ORTHO05D006882 2.4e-127 459.5 340 64.4
vmacro05630 Vaccinium macrocarpon HOM05D005508 ORTHO05D006882 3.1e-127 459.1 422 56.6
Cfa007659 Carpinus fangiana HOM05D005508 ORTHO05D006882 1.2e-126 457.2 337 66.2
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 1.2e-126 457.2 296 73.0
Eucgr.I02026 Eucalyptus grandis HOM05D005508 ORTHO05D006882 1.6e-126 456.8 343 63.6
Medtr7g099170 Medicago truncatula HOM05D005508 ORTHO05D006882 1.6e-126 456.8 344 64.0
CARHR197750 Cardamine hirsuta HOM05D005508 ORTHO05D006882 4.5e-126 455.3 344 63.7
HanXRQChr17g0551711 Helianthus annuus HOM05D005508 ORTHO05D006882 2.3e-125 453.0 344 64.2
Solyc01g111030.2 Solanum lycopersicum HOM05D005508 ORTHO05D006882 2.9e-125 452.6 381 58.5
arahy.Tifrunner.gnm1.ann1.6ZV37H Arachis hypogaea HOM05D005508 ORTHO05D006882 6.6e-125 451.4 340 65.0
MELO3C008857.2 Cucumis melo HOM05D005508 ORTHO05D006882 1.1e-124 450.7 356 61.5
Lj2g0000039 Lotus japonicus HOM05D005508 ORTHO05D006882 1.1e-124 450.7 344 62.8
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 1.9e-124 449.9 344 63.4
Migut.K01277 Erythranthe guttata HOM05D005508 ORTHO05D006882 4.3e-124 448.7 350 62.3
AUR62029195 Chenopodium quinoa HOM05D005508 ORTHO05D006882 2.8e-123 446.0 352 61.9
Aa31LG3G15780 Aethionema arabicum HOM05D005508 ORTHO05D006882 3.6e-123 445.7 344 61.6
CsaV3_4G011930 Cucumis sativus L. HOM05D005508 ORTHO05D006882 6.1e-123 444.9 356 60.7
Nitab4.5_0017643g0010 Nicotiana tabacum HOM05D005508 ORTHO05D006882 1.8e-122 443.4 348 63.2
Dinv33825 Davidia involucrata HOM05D005508 ORTHO05D006882 2.3e-122 443.0 347 63.1
Oeu007065.1 Olea europaea HOM05D005508 ORTHO05D006882 2.3e-122 443.0 345 61.2
arahy.Tifrunner.gnm1.ann1.LP06NS Arachis hypogaea HOM05D005508 ORTHO05D006882 3.0e-122 442.6 340 64.1
AUR62014947 Chenopodium quinoa HOM05D005508 ORTHO05D006882 1.2e-121 440.7 352 61.1
Thhalv10013619m.g Eutrema salsugineum HOM05D005508 ORTHO05D006882 9.8e-121 437.6 344 61.6
Duzib187G1075 Durio zibethinus HOM05D005508 ORTHO05D006882 2.9e-120 436.0 311 66.9
RcHm_v2.0_Chr2g0165901 Rosa chinensis HOM05D005508 ORTHO05D006882 4.9e-120 435.3 353 62.6
FvH4_6g46921 Fragaria vesca HOM05D005508 ORTHO05D006882 7.0e-119 431.4 353 61.2
FAN14G5804 Fragaria x ananassa HOM05D005508 ORTHO05D010430 7.0e-119 431.4 353 61.2
Lsat_1_v5_gn_4_172421 Lactuca sativa HOM05D005508 ORTHO05D006882 3.5e-118 429.1 347 61.1
CDE02G3404 Ceratophyllum demersum HOM05D005508 ORTHO05D006882 6.0e-118 428.3 357 59.9
Lj4C332G1 Lonicera japonica HOM05D005508 ORTHO05D006882 1.0e-117 427.6 315 65.4
FAN02G1587 Fragaria x ananassa HOM05D005508 ORTHO05D010430 6.6e-117 424.9 353 60.6
BcaC03g18558 Brassica carinata HOM05D005508 ORTHO05D006882 1.5e-116 423.7 347 60.2
Sp6g28530 Schrenkiella parvula HOM05D005508 ORTHO05D006882 1.5e-116 423.7 347 60.2
BcaB01g05044 Brassica carinata HOM05D005508 ORTHO05D006882 9.5e-116 421.0 344 60.8
Os07g0600400 Oryza sativa ssp. japonica HOM05D005508 ORTHO05D006882 4.7e-115 418.7 353 57.8
SHI01216 Sapria himalayana HOM05D005508 ORTHO05D006882 7.5e-113 411.4 332 61.1
Zm00001eb326820 Zea mays HOM05D005508 ORTHO05D006882 7.5e-113 411.4 349 57.0
ATR0626G324 Amborella trichopoda HOM05D005508 ORTHO05D006882 2.3e-109 399.8 355 55.8
Lsat_1_v5_gn_5_138080 Lactuca sativa HOM05D005508 ORTHO05D006882 3.9e-109 399.1 324 61.1
SGA_v2.0_scaffold148G36399 Striga asiatica HOM05D005508 ORTHO05D006882 1.6e-107 393.7 301 61.8
Ah.10g032240 Amaranthus hybridus HOM05D005508 ORTHO05D006882 2.8e-107 392.9 390 52.1
unitig_747.g21846 Utricularia gibba HOM05D005508 ORTHO05D006882 5.2e-106 388.7 344 54.9
ClCG10G002410 Citrullus lanatus HOM05D005508 ORTHO05D006882 3.7e-104 382.5 372 54.0
FAN05G2519 Fragaria x ananassa HOM05D005508 ORTHO05D010430 4.3e-100 369.0 353 55.5
SalBow1G5707 Salvia bowleyana HOM05D005508 ORTHO05D006882 4.7e-99 365.5 358 54.7
MD17G1058800 Malus domestica HOM05D005508 ORTHO05D006882 6.2e-99 365.2 427 48.5
SalBow1G3414 Salvia bowleyana HOM05D005508 ORTHO05D006882 8.1e-99 364.8 358 54.2
EL10Ac2g03136 Beta vulgaris HOM05D005508 ORTHO05D006882 6.8e-98 361.7 364 52.2
C02p07790 Brassica napus HOM05D005508 ORTHO05D006882 8.4e-96 354.8 277 61.0
SEGI_38227 Sequoiadendron giganteum HOM05D005508 ORTHO05D006882 3.2e-95 352.8 347 51.6
Cfa007661 Carpinus fangiana HOM05D005508 ORTHO05D006882 4.3e-92 342.4 268 66.0
TAR622G1292 Trochodendron aralioides HOM05D005508 ORTHO05D006882 1.2e-86 324.3 259 64.5
Mapoly0212s0005 Marchantia polymorpha HOM05D005508 ORTHO05D006882 1.7e-85 320.5 379 47.5
Pp3c23_13260 Physcomitrium patens HOM05D005508 ORTHO05D006882 3.1e-82 309.7 362 44.2
AagrBONN_evm.TU.Sc2ySwM_228.2684 Anthoceros agrestis HOM05D005508 ORTHO05D006882 1.4e-79 300.8 360 45.0
SMO172G0157 Selaginella moellendorffii HOM05D005508 ORTHO05D006882 3.3e-76 289.7 367 41.7
TPR.G17852 Trifolium pratense HOM05D005508 ORTHO05D006882 5.5e-71 272.3 214 63.6
HPP92_025853 Vanilla planifolia HOM05D005508 ORTHO05D006882 2.1e-70 270.4 266 52.3
CBR_g18642 Chara braunii HOM05D005508 ORTHO05D006882 1.0e-61 241.5 356 40.4
MBI16_g10277_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D030056 4.6e-54 216.1 162 67.3
Cre17.g710100 Chlamydomonas reinhardtii HOM05D005508 ORTHO05D006882 2.5e-52 210.3 363 36.1
Lj2g0016184 Lotus japonicus HOM05D005508 ORTHO05D006882 1.7e-51 207.6 312 41.0
MCO06G049 Micromonas commoda HOM05D005508 ORTHO05D006882 5.7e-44 182.6 373 33.8
PRCOL_00003700 Prasinoderma coloniale HOM05D005508 ORTHO05D006882 2.4e-42 177.2 372 33.6
TWI34G1701 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 1.1e-39 168.3 131 67.2
TPR.G17839 Trifolium pratense HOM05D005508 ORTHO05D006882 3.3e-36 156.8 121 59.5
AUR62014946 Chenopodium quinoa HOM05D005508 ORTHO05D006882 4.4e-28 129.8 213 38.5
BcaC04g18902 Brassica carinata HOM05D000941 ORTHO05D000882 7.5e-20 102.4 85 55.3
BolC9t58917H Brassica oleracea HOM05D005508 ORTHO05D006882 7.5e-20 102.4 85 55.3
BraA08t32798Z Brassica rapa HOM05D005508 ORTHO05D006882 2.8e-14 84.0 84 56.0
SHI29385 Sapria himalayana HOM05D005508 ORTHO05D006882 3.4e-12 77.0 66 54.5
SHI29392 Sapria himalayana HOM05D005508 ORTHO05D006882 1.7e-11 74.7 66 60.6
HPP92_025854 Vanilla planifolia HOM05D005508 ORTHO05D006882 2.0e-09 67.8 52 61.5
MBI14_g12781_MAGBIO Magnolia biondii HOM05D000453 ORTHO05D000387 7.8e-09 65.9 207 23.7
Cfa009094 Carpinus fangiana HOM05D000453 ORTHO05D000387 5.0e-08 63.2 140 28.6
TAR622G0687 Trochodendron aralioides HOM05D005508 ORTHO05D006882 1.1e-07 62.0 38 68.4
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 3.3e-07 60.5 208 25.5
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 4.3e-07 60.1 99 34.3
Manes.01G195775 Manihot esculenta HOM05D000453 ORTHO05D000387 4.3e-07 60.1 137 27.0
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 5.6e-07 59.7 170 30.0
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 9.5e-07 58.9 271 21.4
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 9.5e-07 58.9 265 21.9
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 1.6e-06 58.2 171 31.6
SGA_v2.0_scaffold113G31696 Striga asiatica HOM05D005508 ORTHO05D006882 1.6e-06 58.2 160 29.4
CARHR038860 Cardamine hirsuta HOM05D000645 ORTHO05D000494 2.1e-06 57.8 185 21.6
SMO356G0506 Selaginella moellendorffii HOM05D002236 ORTHO05D002341 2.1e-06 57.8 194 27.8
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 2.8e-06 57.4 284 20.8
Lalb_Chr23g0272541 Lupinus albus HOM05D000645 ORTHO05D000494 2.8e-06 57.4 150 25.3
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 4.7e-06 56.6 170 29.4
BcaC04g18853 Brassica carinata HOM05D004758 ORTHO05D006063 4.7e-06 56.6 125 24.8
VMungo1309G0722 Vigna mungo HOM05D000645 ORTHO05D000494 4.7e-06 56.6 171 21.6
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 6.1e-06 56.2 170 29.4
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 6.1e-06 56.2 229 24.9
Hund12433 Selenicereus undatus HOM05D005508 ORTHO05D006882 6.1e-06 56.2 32 75.0
Actinidia04961 Actinidia chinensis HOM05D000453 ORTHO05D000387 8.0e-06 55.8 133 27.8
BcaC03g18515 Brassica carinata HOM05D004758 ORTHO05D006063 8.0e-06 55.8 125 25.6
A02p03760 Brassica napus HOM05D004758 ORTHO05D006063 8.0e-06 55.8 125 25.6
BolC2t06772H Brassica oleracea HOM05D004758 ORTHO05D006063 8.0e-06 55.8 125 25.6
BolC9t58865H Brassica oleracea HOM05D004758 ORTHO05D006063 8.0e-06 55.8 125 25.6
BraA02t05341Z Brassica rapa HOM05D004758 ORTHO05D006063 8.0e-06 55.8 125 25.6
ECA232G1289 Erigeron canadensis HOM05D000453 ORTHO05D000387 8.0e-06 55.8 200 26.5
Rhsim08G0108700 Rhododendron simsii HOM05D000453 ORTHO05D000387 8.0e-06 55.8 295 25.1


User provided reference genes

Program Settings