Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 8.0e-197 690.3 357 100.0
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 3.0e-167 592.0 360 83.9
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 5.2e-164 581.3 366 81.7
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 5.8e-163 577.8 360 81.7
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 4.6e-160 568.2 354 82.5
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.0e-159 567.0 354 82.2
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.0e-159 567.0 354 82.2
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.3e-159 566.6 379 78.1
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.0e-159 565.5 384 77.6
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 4.3e-158 561.6 350 82.0
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 5.6e-158 561.2 325 88.0
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 7.3e-158 560.8 354 80.8
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 2.1e-157 559.3 349 81.1
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.4e-156 556.6 355 81.4
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.4e-156 556.6 332 84.0
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 2.4e-156 555.8 326 85.9
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 5.3e-156 554.7 348 81.3
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 5.3e-156 554.7 349 80.5
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 6.9e-156 554.3 352 81.5
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 9.0e-156 553.9 353 79.9
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.0e-155 552.7 332 83.7
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 2.6e-155 552.4 348 81.0
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 9.9e-155 550.4 323 84.8
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.3e-154 550.1 341 82.1
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.7e-154 549.7 325 85.8
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 2.2e-154 549.3 340 82.6
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 2.2e-154 549.3 356 79.5
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 3.8e-154 548.5 353 78.8
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 3.8e-154 548.5 328 84.5
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 4.9e-154 548.1 326 85.0
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 6.4e-154 547.7 354 78.2
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 6.4e-154 547.7 352 79.5
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 6.4e-154 547.7 352 79.5
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 8.4e-154 547.4 340 81.8
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 8.4e-154 547.4 355 78.6
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 8.4e-154 547.4 348 80.7
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.4e-153 546.6 330 83.3
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 5.4e-153 544.7 328 84.1
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 5.4e-153 544.7 345 80.9
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 9.3e-153 543.9 353 79.0
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 9.3e-153 543.9 326 84.4
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 9.3e-153 543.9 349 80.5
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.2e-152 543.5 343 81.3
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 2.1e-152 542.7 330 82.4
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 2.7e-152 542.3 349 81.1
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.5e-152 542.0 336 82.4
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 3.5e-152 542.0 337 82.5
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 4.6e-152 541.6 333 82.3
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 4.6e-152 541.6 325 84.9
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 7.9e-152 540.8 331 83.1
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.3e-151 540.0 344 80.2
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 3.9e-151 538.5 342 81.3
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 6.6e-151 537.7 343 80.2
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 6.6e-151 537.7 352 77.6
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 6.6e-151 537.7 352 78.7
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 8.7e-151 537.3 332 82.5
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.5e-150 536.6 336 81.8
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.5e-150 536.6 347 79.5
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.9e-150 536.2 336 81.8
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.9e-150 536.2 330 81.5
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.5e-150 535.8 325 82.2
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 5.6e-150 534.6 368 77.7
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.6e-150 533.9 326 83.1
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 9.6e-150 533.9 324 83.3
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.3e-149 533.5 350 78.6
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.6e-149 533.1 342 78.9
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 4.8e-149 531.6 343 80.2
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 8.1e-149 530.8 327 81.7
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.1e-148 530.4 325 80.3
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 4.0e-148 528.5 370 74.9
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 5.3e-148 528.1 332 80.7
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 5.3e-148 528.1 351 76.9
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 5.3e-148 528.1 323 80.8
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.9e-148 527.7 337 81.3
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 1.2e-147 526.9 323 80.5
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.5e-147 526.6 344 79.1
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.5e-147 526.6 323 80.5
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 7.6e-147 524.2 343 77.8
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.3e-146 523.5 353 76.5
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 1.3e-146 523.5 353 77.3
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 2.2e-146 522.7 353 75.6
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.2e-146 522.7 337 78.6
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 4.9e-146 521.5 344 78.5
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 6.4e-146 521.2 353 75.4
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.4e-146 520.8 337 78.6
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.1e-145 520.4 323 80.2
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 1.4e-145 520.0 322 82.6
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.9e-145 519.6 318 81.4
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 2.4e-145 519.2 353 75.6
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 2.4e-145 519.2 353 75.6
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 3.2e-145 518.8 352 76.1
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 4.2e-145 518.5 352 77.3
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 7.1e-145 517.7 352 75.6
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 7.1e-145 517.7 353 76.2
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 7.1e-145 517.7 343 76.4
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.1e-145 517.7 343 76.4
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 7.1e-145 517.7 396 69.4
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 9.3e-145 517.3 351 74.6
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 9.3e-145 517.3 353 75.4
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.2e-144 516.9 353 74.2
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.2e-144 516.9 410 67.3
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.2e-144 516.9 345 76.8
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 2.1e-144 516.2 348 75.9
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 4.6e-144 515.0 353 75.9
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.0e-143 513.8 347 77.2
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.3e-143 513.5 353 74.8
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.3e-143 512.7 349 75.6
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.9e-143 511.9 352 73.6
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 6.7e-143 511.1 355 75.8
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 8.7e-143 510.8 348 75.3
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 1.1e-142 510.4 355 73.5
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 1.1e-142 510.4 355 73.5
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.5e-142 510.0 345 76.5
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.5e-142 510.0 352 75.3
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 3.3e-142 508.8 355 73.8
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 3.3e-142 508.8 355 73.8
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.3e-142 508.8 340 75.9
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 4.3e-142 508.4 332 78.9
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 5.6e-142 508.1 355 74.1
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 9.6e-142 507.3 352 75.0
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 9.6e-142 507.3 338 76.0
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.8e-141 505.8 338 76.0
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 4.8e-141 505.0 364 72.3
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.4e-140 503.4 357 73.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.3e-140 501.5 353 73.4
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.2e-139 500.4 435 64.1
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-139 500.0 343 75.2
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-139 500.0 343 75.2
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.8e-139 498.0 324 77.8
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-137 493.4 300 81.7
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 2.5e-137 492.7 286 85.7
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.5e-137 492.7 286 86.0
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 6.0e-136 488.0 353 72.0
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 2.5e-134 482.6 313 79.9
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 8.2e-133 477.6 347 72.3
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.1e-132 477.2 346 72.0
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 3.1e-132 475.7 353 71.4
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.2e-131 473.8 346 69.7
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 4.5e-131 471.9 326 74.2
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.3e-130 470.3 336 72.6
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 1.3e-130 470.3 335 72.2
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.8e-130 468.8 347 69.7
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 9.3e-129 464.2 307 79.5
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 7.9e-128 461.1 348 69.8
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 7.9e-128 461.1 322 73.6
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.8e-124 449.9 299 75.9
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 4.1e-124 448.7 301 75.7
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.6e-110 402.9 297 70.0
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 7.0e-108 394.8 349 60.7
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 6.5e-106 388.3 259 78.0
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 3.6e-104 382.5 250 78.4
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 1.8e-103 380.2 243 81.5
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.7e-98 363.6 290 64.8
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 5.4e-92 342.0 234 76.5
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.3e-82 310.8 276 63.0
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 2.1e-72 276.9 190 75.8
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 3.2e-68 263.1 310 49.7
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 9.2e-68 261.5 164 82.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.8e-63 247.3 355 44.8
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 4.4e-46 189.5 112 78.6
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 6.4e-45 185.7 113 83.2
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 4.8e-40 169.5 191 54.5
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 4.8e-40 169.5 191 54.5
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.8e-39 167.5 173 57.8
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 4.3e-33 146.4 330 34.2
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.5e-30 137.9 101 67.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 2.6e-30 137.1 99 69.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 2.6e-30 137.1 99 69.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.7e-29 134.4 99 68.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 2.9e-29 133.7 98 68.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 5.5e-28 129.4 103 64.1
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.8e-26 124.4 104 59.6
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 2.5e-25 120.6 103 59.2
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.1e-17 95.1 64 71.9
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 7.4e-17 92.4 67 74.6
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.3e-16 89.4 61 78.7
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 8.2e-16 89.0 68 66.2
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 2.0e-06 57.8 35 71.4


User provided reference genes

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