Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 5.3e-198 694.1 339 100.0
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.0e-161 573.5 339 81.7
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.2e-156 555.8 338 78.7
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.6e-154 549.7 339 77.9
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.1e-154 549.3 339 77.3
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 3.6e-154 548.5 339 77.9
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 8.0e-154 547.4 340 77.9
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.3e-153 545.8 340 77.6
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.3e-153 545.8 331 79.2
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.7e-153 544.3 339 77.0
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 2.6e-152 542.3 334 76.3
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 3.3e-152 542.0 339 77.6
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 7.5e-152 540.8 337 76.6
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 1.3e-151 540.0 341 76.2
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 2.2e-151 539.3 309 80.6
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.2e-151 539.3 330 77.6
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.7e-151 538.5 333 78.4
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.4e-150 536.6 337 77.4
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 2.4e-150 535.8 331 76.4
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 3.1e-150 535.4 338 75.7
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 4.1e-150 535.0 310 80.3
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 4.1e-150 535.0 340 76.5
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 5.3e-150 534.6 333 77.5
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.6e-149 533.1 340 75.0
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.7e-149 532.3 339 74.6
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.9e-149 531.2 314 79.6
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.0e-148 530.4 333 77.2
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.3e-148 530.0 339 76.7
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.0e-148 528.1 338 75.4
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 6.5e-148 527.7 309 80.3
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.1e-147 526.9 339 75.5
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.5e-147 526.6 315 79.7
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.9e-147 526.2 341 76.5
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.9e-147 526.2 341 74.2
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 3.2e-147 525.4 337 75.7
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 4.2e-147 525.0 338 75.4
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 4.2e-147 525.0 336 74.7
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 5.5e-147 524.6 334 75.4
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 7.2e-147 524.2 330 76.7
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 9.4e-147 523.9 316 79.7
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.2e-146 523.5 311 78.8
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 2.1e-146 522.7 341 73.6
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 3.6e-146 521.9 338 72.5
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 3.6e-146 521.9 332 76.2
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 3.6e-146 521.9 332 75.0
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 4.7e-146 521.5 328 75.6
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.1e-146 521.2 338 75.1
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.0e-145 520.4 328 75.3
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.4e-145 520.0 341 75.1
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.4e-145 520.0 340 74.4
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.3e-145 519.2 338 75.1
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 3.0e-145 518.8 335 74.0
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.0e-145 518.8 327 75.5
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 4.0e-145 518.5 330 74.5
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 4.0e-145 518.5 327 75.5
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 5.2e-145 518.1 316 78.5
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 6.8e-145 517.7 328 74.7
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.2e-144 516.9 323 75.2
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.0e-144 516.2 339 74.6
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 2.6e-144 515.8 337 72.7
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 5.7e-144 514.6 351 71.2
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 9.8e-144 513.8 340 71.8
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 1.3e-143 513.5 340 71.8
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 3.7e-143 511.9 341 71.0
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 3.7e-143 511.9 340 71.8
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 6.3e-143 511.1 339 72.0
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 1.1e-142 510.4 341 70.7
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 1.1e-142 510.4 341 70.7
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 2.4e-142 509.2 323 74.0
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 3.1e-142 508.8 341 70.7
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 3.1e-142 508.8 341 70.7
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 4.1e-142 508.4 341 71.6
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 4.1e-142 508.4 342 73.4
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 5.4e-142 508.1 338 72.5
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 9.1e-142 507.3 332 73.8
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.6e-141 506.5 340 70.9
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 1.6e-141 506.5 340 70.6
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.3e-140 503.4 335 72.8
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 3.8e-140 501.9 341 74.2
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.3e-139 498.8 332 73.5
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 7.2e-139 497.7 338 70.7
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 9.5e-139 497.3 309 74.4
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.2e-138 496.9 332 73.5
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.2e-138 496.9 335 72.2
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.8e-138 495.7 332 72.6
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 3.4e-136 488.8 324 72.2
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.3e-135 486.9 325 71.7
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 2.8e-135 485.7 341 72.1
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.8e-135 485.7 301 77.7
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.8e-134 483.0 313 71.6
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 9.2e-134 480.7 315 74.6
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.2e-133 480.3 359 66.6
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 2.0e-133 479.6 286 79.7
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 5.9e-133 478.0 383 62.9
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.7e-132 476.5 328 70.1
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.7e-132 476.5 339 67.8
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.3e-132 476.1 317 73.8
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.9e-132 475.7 339 69.3
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 6.6e-132 474.6 335 69.9
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.6e-132 474.2 340 68.5
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.9e-131 473.0 328 69.8
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 4.7e-130 468.4 333 67.9
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 8.0e-130 467.6 318 73.0
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.0e-129 467.2 339 67.6
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 6.8e-129 464.5 326 70.6
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.5e-128 463.4 346 66.8
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 7.5e-128 461.1 357 65.5
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.4e-127 458.0 334 66.2
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.1e-126 457.2 306 69.9
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 7.8e-125 451.1 267 80.5
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.3e-123 445.7 318 68.6
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 4.3e-123 445.3 328 67.1
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 2.6e-120 436.0 308 66.2
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 4.9e-119 431.8 306 65.7
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.9e-119 431.8 283 72.1
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 5.4e-118 428.3 263 77.6
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 5.4e-118 428.3 340 63.8
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 3.5e-117 425.6 276 73.2
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 7.3e-115 417.9 246 80.9
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.1e-114 416.4 302 63.6
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.2e-111 406.4 307 62.9
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 2.2e-111 406.4 313 62.6
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 1.9e-110 403.3 287 68.6
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 2.1e-106 389.8 313 62.0
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 6.2e-98 361.7 406 49.8
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.3e-95 354.0 222 74.3
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.7e-95 353.6 306 60.1
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 8.1e-90 334.7 248 66.5
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 8.1e-90 334.7 255 64.7
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.7e-85 319.7 223 65.5
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.8e-82 309.7 232 63.4
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 6.4e-79 298.5 301 51.5
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 2.9e-71 273.1 267 53.9
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 8.4e-71 271.6 175 74.3
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.1e-69 266.9 170 73.5
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.6e-69 265.8 291 49.8
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 3.2e-54 216.5 141 71.6
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 4.2e-54 216.1 130 76.9
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 9.4e-54 214.9 180 62.2
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.2e-47 193.7 107 85.0
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 1.6e-37 161.0 96 79.2
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 5.3e-33 146.0 169 51.5
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 2.7e-24 117.1 64 84.4
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.5e-22 111.3 66 75.8
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 1.9e-22 110.9 76 60.5
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 4.7e-21 106.3 78 66.7
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.4e-17 94.0 169 37.3
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.7e-15 87.8 55 74.5
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 9.5e-14 82.0 80 58.8
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.0e-12 78.6 87 48.3
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 7.5e-11 72.4 202 25.2
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 2.2e-10 70.9 199 30.2
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 4.9e-10 69.7 95 38.9
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 2.0e-08 64.3 167 29.3
Cfa025086 Carpinus fangiana HOM05D015906 ORTHO05D028597 4.6e-08 63.2 187 27.8
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 6.0e-08 62.8 183 30.1
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 8.6e-07 58.9 41 63.4
MCO07G578 Micromonas commoda HOM05D002024 ORTHO05D004352 1.1e-06 58.5 154 29.2
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 4.3e-06 56.6 158 26.6
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 5.6e-06 56.2 158 26.6
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 7.3e-06 55.8 217 26.3
Aqoxy1G00536 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 9.5e-06 55.5 156 26.3


User provided reference genes

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