Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 3639.4 1958 100.0
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2660.2 1926 73.6
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2515.0 1917 70.8
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2511.5 1917 70.9
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2508.8 1924 70.3
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2337.8 1945 66.9
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2332.4 1921 68.1
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2325.1 1832 69.7
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2318.9 1929 66.3
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2311.2 1942 67.0
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2285.4 1925 66.5
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2267.7 1932 65.6
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2266.9 1880 66.7
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2260.3 1934 65.8
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2259.2 1937 65.8
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2259.2 1945 65.9
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2248.0 1930 65.3
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2244.9 1930 65.9
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2239.5 1801 67.0
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2237.2 1884 66.9
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2236.1 1865 67.1
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2231.4 1932 64.3
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2231.1 1932 64.3
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2225.3 1927 65.1
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2219.1 1936 64.0
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2218.0 1869 66.3
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2201.8 1924 65.2
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2201.0 1919 65.3
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2201.0 1833 66.0
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2200.6 1929 63.9
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2199.5 1937 64.4
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2198.3 1919 64.4
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2196.4 1892 65.8
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2196.4 1936 63.9
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2188.7 1914 64.7
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2187.1 1912 64.7
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2187.1 1910 64.3
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2182.9 1942 63.3
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2182.5 1914 64.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2174.4 1879 65.4
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2164.8 1972 63.3
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2164.8 1928 63.8
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2160.2 1943 63.4
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2159.0 1826 64.5
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2158.6 1870 64.7
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2158.6 1928 63.8
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2158.3 1938 62.7
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2154.4 1787 66.1
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2152.1 1940 63.7
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2147.1 2040 61.3
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2135.9 1935 62.7
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2129.8 1901 62.1
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2127.8 1941 61.9
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2127.8 1909 63.8
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2122.4 1928 62.2
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2121.3 1813 64.5
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2120.1 1917 62.1
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2117.0 1933 61.7
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2113.2 1792 65.0
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2098.6 1912 63.5
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2096.2 1933 61.4
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2094.3 1918 62.6
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2092.0 1936 62.5
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2090.8 1922 62.1
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2085.5 1935 61.5
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2084.7 1927 62.1
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2080.4 1931 61.3
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2077.0 1810 63.5
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2076.2 1844 62.6
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2076.2 1831 62.3
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2063.1 1832 62.7
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2058.1 1772 65.2
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2049.6 1919 61.3
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2040.0 1928 60.0
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2033.1 1912 61.8
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2028.1 1806 63.0
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2017.3 1832 61.3
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 2017.3 1676 66.3
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1999.9 1956 58.6
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1994.5 1957 60.3
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1956.4 1931 58.9
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1952.9 1874 59.8
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1922.1 1892 58.7
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1895.6 1890 58.1
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1889.8 1928 57.4
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1887.1 1935 56.7
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1879.8 1830 57.6
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1872.8 1721 61.6
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1790.0 1898 54.1
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1778.8 1867 55.0
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1773.8 1904 55.8
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1771.5 1871 55.2
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1770.7 1870 55.1
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1756.9 1869 54.4
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1756.5 1956 54.2
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1755.0 1957 54.1
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1751.5 1860 54.4
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1738.0 1926 53.8
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1738.0 1879 53.8
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1737.6 1866 54.5
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1736.9 1869 53.8
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1735.7 1881 53.6
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1728.4 1958 53.6
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1723.4 1972 53.2
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1723.4 1972 53.2
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1663.7 1926 51.3
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1634.0 1829 51.7
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1530.8 1238 66.8
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1525.8 1932 48.8
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1513.4 1229 68.6
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1505.7 1875 48.9
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1505.7 1875 48.9
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1493.8 1476 60.1
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1480.7 1942 49.8
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1479.2 1840 48.6
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1466.1 1917 49.2
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1389.8 1236 64.3
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1377.1 1459 55.0
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1276.9 1768 46.0
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1261.1 1081 65.3
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1217.6 1494 51.3
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1180.2 917 70.0
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1099.0 1338 51.6
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1092.4 1030 63.1
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 1.0e-293 1014.6 857 66.9
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.7e-285 987.3 2009 38.9
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 4.7e-283 979.2 1424 47.5
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.5e-278 963.0 842 63.9
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.3e-268 929.9 1807 37.0
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.8e-256 889.8 825 59.6
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.6e-254 882.9 817 61.3
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.7e-195 688.3 599 64.3
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.9e-191 674.9 660 56.2
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 4.4e-188 663.7 652 54.9
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 2.4e-178 631.3 718 51.0
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.5e-175 622.1 497 64.8
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 8.9e-165 586.3 619 54.0
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.8e-157 562.0 446 68.2
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.5e-143 515.0 536 59.3
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.9e-136 491.1 534 57.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.5e-116 426.0 1223 29.4
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 2.1e-113 415.6 428 55.6
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.3e-104 385.6 459 51.4
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.7e-100 372.1 839 36.2
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.7e-76 292.4 635 34.6
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 2.1e-73 282.7 1948 22.5
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.0e-72 278.5 473 38.1
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 5.0e-67 261.5 429 40.3
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 3.3e-66 258.8 480 39.8
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 7.1e-61 241.1 263 60.1
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.6e-58 231.5 302 53.3
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 3.5e-52 212.2 264 45.8
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 4.6e-52 211.8 198 66.7
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 3.8e-38 165.6 247 49.0
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 8.1e-33 147.9 182 59.9
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 4.2e-29 135.6 177 48.6
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 3.4e-15 89.4 99 49.5
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 5.9e-15 88.6 52 73.1
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.3e-14 87.4 78 60.3
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.7e-14 87.0 63 63.5
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.1e-13 84.3 159 38.4
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 6.7e-11 75.1 65 58.5
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 9.7e-10 71.2 54 57.4
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 3.7e-09 69.3 33 87.9
EL10Ac7g17257 Beta vulgaris HOM05D002037 ORTHO05D021575 5.0e-06 58.9 39 74.4
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 8.5e-06 58.2 129 52.7


User provided reference genes

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