Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0005390 Simmondsia chinensis HOM05D003508 ORTHO05D389535 4.2e-40 167.5 83 100.0
CiPaw.13G040400 Carya illinoinensis HOM05D003508 ORTHO05D004579 2.0e-10 68.9 50 72.0
AUR62027288 Chenopodium quinoa HOM05D003508 ORTHO05D004579 2.0e-10 68.9 50 72.0
EL10Ac5g12977 Beta vulgaris HOM05D003508 ORTHO05D004579 3.5e-10 68.2 50 70.0
Sc06g0002320 Simmondsia chinensis HOM05D003508 ORTHO05D004579 7.7e-10 67.0 50 70.0
Hund11567 Selenicereus undatus HOM05D003508 ORTHO05D004579 1.7e-09 65.9 50 66.0
SGA_v2.0_scaffold7G04100 Striga asiatica HOM05D003508 ORTHO05D004579 1.7e-09 65.9 66 54.5
AUR62007446 Chenopodium quinoa HOM05D003508 ORTHO05D004579 2.2e-09 65.5 50 68.0
QL04p046077 Quercus lobata HOM05D003508 ORTHO05D004579 2.2e-09 65.5 50 66.0
Gohir.A13G010700 Gossypium hirsutum HOM05D003508 ORTHO05D004579 2.9e-09 65.1 50 70.0
Gohir.D13G011400 Gossypium hirsutum HOM05D003508 ORTHO05D004579 2.9e-09 65.1 50 70.0
Gorai.013G012400 Gossypium raimondii HOM05D003508 ORTHO05D004579 2.9e-09 65.1 50 70.0
Manes.07G087500 Manihot esculenta HOM05D003508 ORTHO05D004579 2.9e-09 65.1 50 68.0
Nitab4.5_0000691g0130 Nicotiana tabacum HOM05D003508 ORTHO05D004579 2.9e-09 65.1 50 66.0
Nitab4.5_0003927g0020 Nicotiana tabacum HOM05D003508 ORTHO05D004579 2.9e-09 65.1 50 66.0
CSS0009164 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 3.8e-09 64.7 56 58.9
CAN.G645.2 Capsicum annuum HOM05D003508 ORTHO05D004579 3.8e-09 64.7 50 66.0
Dinv09607 Davidia involucrata HOM05D003508 ORTHO05D004579 3.8e-09 64.7 56 62.5
Nitab4.5_0001437g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 3.8e-09 64.7 50 66.0
CSS0049709 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 5.0e-09 64.3 56 58.9
Hund14639 Selenicereus undatus HOM05D003508 ORTHO05D004579 5.0e-09 64.3 50 68.0
TWI63G0607 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 5.0e-09 64.3 50 66.0
Cpa.g.sc183.13 Carica papaya HOM05D003508 ORTHO05D004579 6.5e-09 63.9 50 68.0
Oeu025589.3 Olea europaea HOM05D003508 ORTHO05D004579 6.5e-09 63.9 50 68.0
Sopen04g004800 Solanum pennellii HOM05D003508 ORTHO05D004579 6.5e-09 63.9 56 57.1
TWI38G0289 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 6.5e-09 63.9 50 66.0
GSVIVG01011287001 Vitis vinifera HOM05D003508 ORTHO05D004579 6.5e-09 63.9 56 60.7
Hma1.2p1_0356F.1_g134090 Hydrangea macrophylla HOM05D003508 ORTHO05D004579 8.5e-09 63.5 50 66.0
Peaxi162Scf00519g00710 Petunia axillaris HOM05D003508 ORTHO05D004579 8.5e-09 63.5 50 66.0
Rhsim03G0099000 Rhododendron simsii HOM05D003508 ORTHO05D004579 8.5e-09 63.5 51 64.7
DCAR_006338 Daucus carota HOM05D003508 ORTHO05D004579 1.1e-08 63.2 56 58.9
Eucgr.J00991 Eucalyptus grandis HOM05D003508 ORTHO05D004579 1.1e-08 63.2 50 64.0
Solyc11g007020.2 Solanum lycopersicum HOM05D003508 ORTHO05D004579 1.5e-08 62.8 50 64.0
Sopen11g002940 Solanum pennellii HOM05D003508 ORTHO05D004579 1.5e-08 62.8 50 64.0
PGSC0003DMG400016014 Solanum tuberosum HOM05D003508 ORTHO05D004579 1.5e-08 62.8 56 55.4
PGSC0003DMG400023978 Solanum tuberosum HOM05D003508 ORTHO05D004579 1.5e-08 62.8 50 64.0
HPP92_006808 Vanilla planifolia HOM05D003508 ORTHO05D004579 1.5e-08 62.8 50 66.0
PSO339G4868 Papaver somniferum HOM05D003508 ORTHO05D004579 1.9e-08 62.4 50 64.0
PSO384G2067 Papaver somniferum HOM05D003508 ORTHO05D004579 1.9e-08 62.4 50 64.0
Aqoxy4G02791 Aquilegia oxysepala HOM05D003508 ORTHO05D004579 2.5e-08 62.0 50 62.0
Haze_03293 Corylus avellana HOM05D003508 ORTHO05D004579 2.5e-08 62.0 50 64.0
Manes.10G058800 Manihot esculenta HOM05D003508 ORTHO05D004579 2.5e-08 62.0 50 66.0
Lj2C31T21 Lonicera japonica HOM05D003508 ORTHO05D004579 3.2e-08 61.6 56 58.9
Peaxi162Scf00173g00046 Petunia axillaris HOM05D003508 ORTHO05D004579 3.2e-08 61.6 50 64.0
Potri.010G237900 Populus trichocarpa HOM05D003508 ORTHO05D004579 3.2e-08 61.6 50 64.0
PGR044G1695 Punica granatum HOM05D003508 ORTHO05D004579 3.2e-08 61.6 50 64.0
Actinidia34720 Actinidia chinensis HOM05D003508 ORTHO05D004579 4.2e-08 61.2 56 58.9
Rhsim03G0099400 Rhododendron simsii HOM05D003508 ORTHO05D004579 4.2e-08 61.2 50 64.0
Cc02_g09750 Coffea canephora HOM05D003508 ORTHO05D004579 5.5e-08 60.8 50 62.0
FvH4_7g05610 Fragaria vesca HOM05D003508 ORTHO05D004579 5.5e-08 60.8 50 62.0
FAN01G1243 Fragaria x ananassa HOM05D003508 ORTHO05D004579 5.5e-08 60.8 50 62.0
FAN03G1980 Fragaria x ananassa HOM05D003508 ORTHO05D004579 5.5e-08 60.8 50 62.0
FAN06G4590 Fragaria x ananassa HOM05D003508 ORTHO05D004579 5.5e-08 60.8 50 62.0
FAN10G3478 Fragaria x ananassa HOM05D003508 ORTHO05D004579 5.5e-08 60.8 50 62.0
RcHm_v2.0_Chr1g0332421 Rosa chinensis HOM05D003508 ORTHO05D004579 5.5e-08 60.8 50 62.0
Actinidia06698 Actinidia chinensis HOM05D003508 ORTHO05D004579 7.2e-08 60.5 56 57.1
Cfa010322 Carpinus fangiana HOM05D003508 ORTHO05D004579 7.2e-08 60.5 50 62.0
Ciclev10015368m.g Citrus clementina HOM05D003508 ORTHO05D004579 7.2e-08 60.5 50 64.0
Lsat_1_v5_gn_0_7601 Lactuca sativa HOM05D003508 ORTHO05D004579 7.2e-08 60.5 50 62.0
Lsat_1_v5_gn_2_104600 Lactuca sativa HOM05D003508 ORTHO05D004579 7.2e-08 60.5 50 62.0
Duzib106G0726 Durio zibethinus HOM05D003508 ORTHO05D004579 9.4e-08 60.1 50 64.0
Lalb_Chr02g0146341 Lupinus albus HOM05D003508 ORTHO05D004579 9.4e-08 60.1 50 66.0
Lalb_Chr06g0166461 Lupinus albus HOM05D003508 ORTHO05D004579 9.4e-08 60.1 49 61.2
Oeu026584.1 Olea europaea HOM05D003508 ORTHO05D004579 9.4e-08 60.1 50 62.0
Thecc.10G106000 Theobroma cacao HOM05D003508 ORTHO05D004579 9.4e-08 60.1 50 64.0
TAR633G0880 Trochodendron aralioides HOM05D003508 ORTHO05D004579 9.4e-08 60.1 50 64.0
CsaV3_5G035560 Cucumis sativus L. HOM05D003508 ORTHO05D004579 1.2e-07 59.7 50 64.0
CsaV3_7G016180 Cucumis sativus L. HOM05D003508 ORTHO05D004579 1.2e-07 59.7 50 64.0
SalBow6G1879 Salvia bowleyana HOM05D003508 ORTHO05D004579 1.2e-07 59.7 50 62.0
SHI21271 Sapria himalayana HOM05D003508 ORTHO05D004579 1.2e-07 59.7 50 60.0
unitig_736.g22527 Utricularia gibba HOM05D003508 ORTHO05D004579 1.2e-07 59.7 50 60.0
Ca_25671_v3 Cicer arietinum L. HOM05D003508 ORTHO05D004579 1.6e-07 59.3 50 64.0
Lj5g0024073 Lotus japonicus HOM05D003508 ORTHO05D004579 1.6e-07 59.3 50 64.0
Lalb_Chr21g0309221 Lupinus albus HOM05D003508 ORTHO05D004579 1.6e-07 59.3 50 64.0
MBI16_g39317_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 1.6e-07 59.3 50 64.0
MBI17_g42676_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 1.6e-07 59.3 50 64.0
Sed0023449 Sechium edule HOM05D003508 ORTHO05D004579 1.6e-07 59.3 50 60.0
Ah.02g117270 Amaranthus hybridus HOM05D003508 ORTHO05D004579 2.1e-07 58.9 52 61.5
COL.COLO4_24552 Corchorus olitorius HOM05D003508 ORTHO05D004579 2.1e-07 58.9 50 62.0
Phvul.007G021200 Phaseolus vulgaris HOM05D003508 ORTHO05D004579 2.1e-07 58.9 50 64.0
VMungo0720G2493 Vigna mungo HOM05D003508 ORTHO05D004579 2.1e-07 58.9 50 64.0
Actinidia18595 Actinidia chinensis HOM05D003508 ORTHO05D004579 2.7e-07 58.5 56 55.4
Actinidia36696 Actinidia chinensis HOM05D003508 ORTHO05D004579 2.7e-07 58.5 56 55.4
Carub.0005s2084 Capsella rubella HOM05D003508 ORTHO05D004579 2.7e-07 58.5 50 62.0
MELO3C012357.2 Cucumis melo HOM05D003508 ORTHO05D004579 2.7e-07 58.5 50 62.0
HanXRQChr11g0342191 Helianthus annuus HOM05D003508 ORTHO05D004579 2.7e-07 58.5 50 60.0
Lj3A928T54 Lonicera japonica HOM05D003508 ORTHO05D004579 2.7e-07 58.5 50 60.0
THA.LOC104824218 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 2.7e-07 58.5 50 62.0
CANSAT56G3087 Cannabis sativa HOM05D003508 ORTHO05D004579 3.6e-07 58.2 50 60.0
Migut.F00911 Erythranthe guttata HOM05D003508 ORTHO05D004579 3.6e-07 58.2 50 62.0
Medtr1g112230 Medicago truncatula HOM05D003508 ORTHO05D004579 3.6e-07 58.2 50 62.0
AT3G54250 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 4.7e-07 57.8 50 60.0
A04p05510 Brassica napus HOM05D003508 ORTHO05D004579 4.7e-07 57.8 50 60.0
A09p47250 Brassica napus HOM05D003508 ORTHO05D004579 4.7e-07 57.8 50 60.0
C08p29490 Brassica napus HOM05D003508 ORTHO05D004579 4.7e-07 57.8 50 60.0
BolC8t50554H Brassica oleracea HOM05D003508 ORTHO05D004579 4.7e-07 57.8 50 60.0
BraA04t16251Z Brassica rapa HOM05D003508 ORTHO05D004579 4.7e-07 57.8 50 60.0
BraA09t40187Z Brassica rapa HOM05D003508 ORTHO05D004579 4.7e-07 57.8 50 60.0
CARHR164170 Cardamine hirsuta HOM05D003508 ORTHO05D004579 4.7e-07 57.8 50 60.0
MD07G1064100 Malus domestica HOM05D003508 ORTHO05D004579 4.7e-07 57.8 50 60.0
Sp5g08150 Schrenkiella parvula HOM05D003508 ORTHO05D004579 4.7e-07 57.8 50 60.0
SGA_v2.0_scaffold62G21342 Striga asiatica HOM05D003508 ORTHO05D004579 4.7e-07 57.8 45 66.7
THA.LOC104811335 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 4.7e-07 57.8 50 58.0
BcaB02g08480 Brassica carinata HOM05D003508 ORTHO05D004579 6.1e-07 57.4 50 58.0
CARHR133390 Cardamine hirsuta HOM05D003508 ORTHO05D004579 6.1e-07 57.4 71 49.3
ECA238G0717 Erigeron canadensis HOM05D003508 ORTHO05D004579 6.1e-07 57.4 50 60.0
MD02G1256300 Malus domestica HOM05D003508 ORTHO05D004579 6.1e-07 57.4 50 60.0
Nn6g34927 Nelumbo nucifera HOM05D003508 ORTHO05D004579 6.1e-07 57.4 50 62.0
Psat6g231280 Pisum sativum HOM05D003508 ORTHO05D004579 6.1e-07 57.4 50 62.0
Potri.008G021100 Populus trichocarpa HOM05D003508 ORTHO05D004579 6.1e-07 57.4 50 60.0
Sabra08G0014400 Salix brachista HOM05D003508 ORTHO05D004579 6.1e-07 57.4 50 60.0
TPR.G2474 Trifolium pratense HOM05D003508 ORTHO05D004579 6.1e-07 57.4 60 58.3
AL5G35290 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 8.0e-07 57.0 50 60.0
Thhalv10023484m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 8.0e-07 57.0 50 60.0
Carub.0004s2070 Capsella rubella HOM05D003508 ORTHO05D004579 1.0e-06 56.6 71 49.3
Haze_01394 Corylus avellana HOM05D003508 ORTHO05D004579 1.0e-06 56.6 50 60.0
Prupe.2G078900 Prunus persica HOM05D003508 ORTHO05D004579 1.0e-06 56.6 50 60.0
TAR636G1619 Trochodendron aralioides HOM05D003508 ORTHO05D004579 1.0e-06 56.6 61 49.2
Aa31sc26G40 Aethionema arabicum HOM05D003508 ORTHO05D004579 1.4e-06 56.2 50 62.0
arahy.Tifrunner.gnm1.ann1.Q6BHJ0 Arachis hypogaea HOM05D003508 ORTHO05D004579 1.4e-06 56.2 49 57.1
arahy.Tifrunner.gnm1.ann1.Y4RU6H Arachis hypogaea HOM05D003508 ORTHO05D004579 1.4e-06 56.2 49 57.1
BcaC02g09078 Brassica carinata HOM05D003508 ORTHO05D004579 1.4e-06 56.2 50 58.0
C04p38200 Brassica napus HOM05D003508 ORTHO05D004579 1.4e-06 56.2 50 58.0
BolC4t25395H Brassica oleracea HOM05D003508 ORTHO05D004579 1.4e-06 56.2 50 58.0
CSS0018426 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.4e-06 56.2 56 53.6
Sp4g21060 Schrenkiella parvula HOM05D003508 ORTHO05D004579 1.4e-06 56.2 50 60.0
AL4G36000 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 1.8e-06 55.8 71 47.9
AT2G38700 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 1.8e-06 55.8 71 47.9
ClCG05G021710 Citrullus lanatus HOM05D003508 ORTHO05D004579 1.8e-06 55.8 50 60.0
Eucgr.G02693 Eucalyptus grandis HOM05D003508 ORTHO05D004579 1.8e-06 55.8 49 59.2
Thhalv10010411m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 1.8e-06 55.8 50 58.0
Pp3c5_15100 Physcomitrium patens HOM05D003508 ORTHO05D004579 1.8e-06 55.8 56 51.8
Aa31sc79G100 Aethionema arabicum HOM05D003508 ORTHO05D004579 2.3e-06 55.5 50 60.0
Pp3c6_12700 Physcomitrium patens HOM05D003508 ORTHO05D004579 2.3e-06 55.5 56 50.0
Glyma.10G279800 Glycine max HOM05D003508 ORTHO05D004579 3.0e-06 55.1 50 60.0
Glyma.20G109900 Glycine max HOM05D003508 ORTHO05D004579 3.0e-06 55.1 50 60.0
Os02g0109100 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 3.0e-06 55.1 49 55.1
Zm00001eb257840 Zea mays HOM05D003508 ORTHO05D004579 3.0e-06 55.1 49 57.1
MSTRG.27535 Avicennia marina HOM05D003508 ORTHO05D004579 4.0e-06 54.7 50 58.0
CDE04G2729 Ceratophyllum demersum HOM05D003508 ORTHO05D004579 6.8e-06 53.9 50 60.0
Zm00001eb056620 Zea mays HOM05D003508 ORTHO05D004579 8.8e-06 53.5 49 55.1


User provided reference genes

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