Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 0.0e+00 1089.7 565 100.0
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 5.2e-259 897.5 569 84.4
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 5.8e-250 867.5 573 80.6
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 7.3e-245 850.5 570 77.9
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 8.1e-244 847.0 570 78.2
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 3.1e-243 845.1 567 78.5
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 4.0e-243 844.7 573 78.7
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.2e-242 843.2 571 78.3
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 1.7e-241 839.3 567 77.8
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.2e-241 839.0 567 78.3
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 6.4e-241 837.4 573 79.2
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 8.4e-241 837.0 575 76.7
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 1.1e-240 836.6 572 77.4
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 3.2e-240 835.1 581 76.9
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 3.2e-240 835.1 571 77.1
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 7.1e-240 833.9 575 76.9
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.7e-239 832.0 575 76.9
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.0e-238 830.1 568 76.8
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.3e-238 829.7 577 77.5
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 1.7e-238 829.3 568 77.3
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 6.6e-238 827.4 571 77.9
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 2.5e-237 825.5 573 76.1
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 4.3e-237 824.7 548 78.8
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 5.6e-237 824.3 583 76.7
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 7.4e-237 823.9 583 76.7
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.3e-236 823.2 566 76.9
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 2.8e-236 822.0 566 77.2
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 3.6e-236 821.6 594 75.4
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 3.6e-236 821.6 565 77.2
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 8.1e-236 820.5 573 76.8
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 1.1e-235 820.1 570 74.9
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 1.8e-235 819.3 569 76.4
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 1.8e-235 819.3 574 76.7
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 1.8e-235 819.3 572 76.2
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 3.1e-235 818.5 573 76.1
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 5.3e-235 817.8 570 76.7
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 9.0e-235 817.0 581 75.7
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 1.5e-234 816.2 571 76.0
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 2.6e-234 815.5 575 75.0
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 2.6e-234 815.5 574 77.0
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.4e-234 815.1 580 74.8
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 2.2e-233 812.4 569 76.3
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 3.8e-233 811.6 572 75.2
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.1e-232 810.1 574 76.8
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 2.4e-232 808.9 576 74.8
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 7.1e-232 807.4 569 75.7
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 9.3e-232 807.0 573 75.2
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 3.5e-231 805.1 570 74.6
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.9e-229 799.3 565 75.8
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 5.3e-227 791.2 570 75.3
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 2.0e-226 789.3 575 73.9
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 3.4e-226 788.5 577 74.9
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 1.7e-225 786.2 568 74.8
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 2.2e-225 785.8 571 73.6
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 2.2e-225 785.8 576 74.3
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 6.5e-225 784.3 575 74.3
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 1.9e-224 782.7 575 75.0
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 1.9e-224 782.7 568 74.6
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.2e-224 781.6 530 78.1
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 5.5e-224 781.2 580 73.6
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 7.1e-224 780.8 568 73.8
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 7.1e-224 780.8 574 72.6
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 4.6e-223 778.1 578 74.6
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.3e-222 775.8 557 74.7
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 7.4e-221 770.8 572 71.0
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 1.6e-220 769.6 572 72.2
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 2.8e-220 768.8 631 67.2
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.8e-219 766.1 574 70.7
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.4e-219 765.8 574 70.7
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.1e-219 765.0 574 70.4
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 6.9e-219 764.2 576 71.5
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.7e-217 759.6 574 70.2
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.4e-216 756.5 673 63.9
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.2e-215 753.4 582 70.4
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.2e-215 753.4 569 72.8
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.1e-215 751.1 601 67.6
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 1.9e-213 746.1 588 69.6
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 9.7e-213 743.8 581 72.8
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.3e-212 743.4 553 72.3
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 2.8e-212 742.3 558 72.9
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 6.3e-212 741.1 572 70.8
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 1.4e-211 740.0 590 70.2
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 1.4e-211 740.0 508 77.6
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 6.9e-211 737.6 568 70.1
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 1.8e-206 723.0 533 71.9
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 1.8e-206 723.0 739 58.3
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 2.3e-206 722.6 521 75.6
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 3.0e-206 722.2 564 70.4
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 1.5e-205 719.9 496 75.0
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 2.0e-205 719.5 554 68.6
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 6.9e-203 711.1 555 67.6
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 2.6e-202 709.1 592 64.0
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 4.5e-202 708.4 568 70.6
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.4e-200 703.4 600 62.7
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 2.5e-200 702.6 578 68.3
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 2.0e-197 693.0 579 64.9
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 2.0e-197 693.0 579 64.9
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 2.0e-197 693.0 579 64.9
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 2.8e-196 689.1 572 65.4
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 6.3e-196 688.0 578 64.4
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 6.3e-196 688.0 572 65.2
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 4.1e-195 685.3 586 63.3
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 3.8e-193 678.7 576 64.2
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.2e-192 675.6 571 66.9
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 1.0e-190 670.6 562 66.2
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 1.3e-185 653.7 489 72.0
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 3.4e-181 639.0 566 64.8
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 3.7e-172 609.0 418 75.4
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 1.2e-167 594.0 588 59.4
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 4.7e-143 512.3 384 71.9
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 4.6e-138 495.7 577 52.2
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.3e-129 467.6 596 50.3
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.6e-127 460.7 507 53.6
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.6e-127 460.7 507 53.6
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.6e-127 460.7 507 53.6
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 2.2e-124 450.3 480 56.5
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 6.9e-118 428.7 264 80.7
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 9.9e-117 424.9 348 65.5
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 7.2e-83 312.4 260 67.3
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 8.2e-79 298.9 235 69.4
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 6.5e-76 289.3 349 51.6
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 8.5e-76 288.9 195 76.9
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 1.9e-75 287.7 548 41.2
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 1.0e-73 282.0 163 87.7
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 3.3e-72 276.9 162 84.6
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 2.7e-69 267.3 343 51.0
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 5.9e-69 266.2 194 73.2
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.9e-67 261.2 166 82.5
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 1.2e-64 251.9 280 53.6
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 1.7e-63 248.1 423 39.7
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 4.9e-55 219.9 171 73.1
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 2.0e-53 214.5 134 77.6
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 4.7e-50 203.4 423 37.6
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 3.7e-47 193.7 137 71.5
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 5.6e-43 179.9 606 32.7
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 2.8e-42 177.6 175 60.6
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 1.1e-38 165.6 118 78.8
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 7.8e-37 159.5 114 74.6
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 3.3e-35 154.1 143 60.8
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 1.6e-34 151.8 152 57.2
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 2.4e-25 121.3 70 84.3
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 5.2e-25 120.2 155 46.5
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.1e-22 112.5 58 94.8
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 3.9e-20 104.0 78 66.7
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 1.5e-19 102.1 81 61.7
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 5.6e-19 100.1 183 37.7
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 3.1e-17 94.4 113 50.4
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.6e-16 91.3 67 73.1
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 5.8e-16 90.1 69 71.0
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 2.2e-15 88.2 92 50.0
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 3.2e-14 84.3 69 71.0
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 5.4e-14 83.6 137 36.5
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 1.7e-12 78.6 88 45.5
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.5e-11 75.5 57 75.4
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 4.0e-09 67.4 49 77.6
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 5.8e-08 63.5 63 50.8
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 2.2e-07 61.6 63 49.2
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.9e-06 58.5 64 59.4
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 3.2e-06 57.8 35 82.9


User provided reference genes

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