Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 2.7e-115 418.7 212 100.0
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 4.5e-78 295.0 210 75.7
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 3.8e-77 292.0 212 72.2
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 3.8e-77 292.0 206 74.3
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 4.9e-77 291.6 211 73.0
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 2.4e-76 289.3 208 73.6
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 2.4e-76 289.3 208 73.6
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 4.2e-76 288.5 205 72.7
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 4.2e-76 288.5 208 74.0
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 5.4e-76 288.1 206 75.7
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 3.5e-75 285.4 207 74.9
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 4.6e-75 285.0 208 74.5
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 1.3e-74 283.5 207 74.4
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 1.8e-74 283.1 209 72.2
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 2.3e-74 282.7 205 73.7
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 2.3e-74 282.7 214 72.0
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 3.0e-74 282.3 205 74.1
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 3.9e-74 282.0 208 72.6
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 3.9e-74 282.0 205 73.2
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 3.9e-74 282.0 207 73.9
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 6.7e-74 281.2 209 72.7
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 8.7e-74 280.8 209 72.7
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.1e-73 280.4 204 73.5
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 4.3e-73 278.5 208 72.6
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 4.3e-73 278.5 204 73.0
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 9.6e-73 277.3 207 70.5
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 1.3e-72 276.9 210 73.3
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 1.6e-72 276.6 200 71.0
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 1.6e-72 276.6 205 72.7
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 2.1e-72 276.2 202 72.3
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 2.1e-72 276.2 202 72.3
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 2.1e-72 276.2 207 70.0
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 2.8e-72 275.8 206 72.3
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 2.8e-72 275.8 206 70.9
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 2.8e-72 275.8 210 70.5
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 3.7e-72 275.4 207 71.0
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 4.8e-72 275.0 212 69.3
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 4.8e-72 275.0 204 71.6
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 6.2e-72 274.6 204 71.6
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 6.2e-72 274.6 204 71.6
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 8.1e-72 274.2 211 72.0
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 1.1e-71 273.9 202 70.3
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 1.8e-71 273.1 206 72.8
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 1.8e-71 273.1 207 72.5
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.8e-71 273.1 204 72.1
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 3.1e-71 272.3 202 69.8
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 4.0e-71 271.9 205 71.7
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 1.2e-70 270.4 211 68.2
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 2.0e-70 269.6 211 68.2
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 2.6e-70 269.2 204 69.6
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 5.8e-70 268.1 222 67.6
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 7.6e-70 267.7 199 73.9
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 7.6e-70 267.7 202 70.3
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 7.6e-70 267.7 210 70.5
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 7.6e-70 267.7 208 70.7
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 1.7e-69 266.5 205 68.3
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 2.2e-69 266.2 205 70.2
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 2.9e-69 265.8 206 68.4
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 2.9e-69 265.8 204 68.6
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 1.4e-68 263.5 202 68.3
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 1.4e-68 263.5 202 68.3
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 1.4e-68 263.5 199 70.9
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 1.9e-68 263.1 201 69.2
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 1.9e-68 263.1 201 69.2
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.9e-68 263.1 200 70.5
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 1.9e-68 263.1 208 66.8
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 1.9e-68 263.1 201 69.2
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 2.5e-68 262.7 201 69.2
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 3.2e-68 262.3 202 68.8
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.2e-68 261.9 202 68.3
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.2e-68 261.9 202 68.3
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 5.5e-68 261.5 201 68.7
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 7.1e-68 261.2 213 66.7
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 9.3e-68 260.8 202 67.8
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 3.5e-67 258.8 208 67.8
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 3.5e-67 258.8 202 68.3
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 4.6e-67 258.5 208 66.8
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 4.6e-67 258.5 214 68.2
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 6.0e-67 258.1 200 71.5
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 1.1e-65 253.8 208 66.3
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 2.8e-64 249.2 202 66.3
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 4.8e-64 248.4 190 69.5
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 6.2e-64 248.1 201 68.7
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 8.2e-64 247.7 214 66.8
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 4.1e-63 245.4 269 55.0
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 6.9e-63 244.6 257 56.4
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.7e-61 240.0 198 63.1
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 5.5e-60 235.0 176 71.0
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 2.2e-56 223.0 170 67.6
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 8.2e-56 221.1 198 60.1
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 9.0e-55 217.6 158 72.2
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.2e-54 217.2 175 69.7
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 3.4e-54 215.7 205 59.0
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 1.0e-53 214.2 209 61.7
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.9e-52 209.9 208 60.1
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 2.1e-51 206.5 198 57.6
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 6.7e-50 201.4 272 50.4
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 1.7e-48 196.8 148 71.6
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.1e-47 192.6 207 55.1
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 4.7e-43 178.7 112 83.0
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 1.0e-42 177.6 119 78.2
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 1.4e-42 177.2 119 79.8
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 1.5e-41 173.7 148 64.9
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 9.7e-41 171.0 123 72.4
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 2.2e-40 169.9 148 62.8
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 3.1e-39 166.0 139 64.7
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 5.2e-34 148.7 211 43.6
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 1.5e-33 147.1 208 43.8
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 8.2e-32 141.4 122 62.3
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 1.1e-31 141.0 111 65.8
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 1.4e-31 140.6 127 62.2
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 1.1e-28 131.0 186 48.4
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 6.1e-27 125.2 138 55.8
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 6.8e-26 121.7 144 49.3
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 8.8e-26 121.3 146 50.7
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 4.5e-22 109.0 141 46.8
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 3.0e-18 96.3 70 72.9
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.3e-16 90.9 87 56.3
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 5.9e-14 82.0 145 35.9
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.3e-13 80.1 87 52.9
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 5.6e-12 75.5 119 42.0
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 1.7e-08 63.9 51 62.7
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 1.4e-07 60.8 55 60.0


User provided reference genes

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