Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 3.2e-85 318.5 180 100.0
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 3.1e-40 169.1 112 85.7
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 2.9e-38 162.5 112 75.0
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 2.9e-38 162.5 112 77.7
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 2.5e-37 159.5 108 89.8
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 2.5e-37 159.5 116 87.1
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 1.6e-36 156.8 109 89.0
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 2.7e-36 156.0 113 82.3
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 8.0e-36 154.5 110 73.6
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 8.0e-36 154.5 109 79.8
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 1.0e-35 154.1 112 73.2
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 2.3e-35 152.9 112 81.2
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 6.8e-35 151.4 112 70.5
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 6.8e-35 151.4 112 84.8
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 6.8e-35 151.4 112 85.7
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 8.8e-35 151.0 110 86.4
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.2e-34 150.6 112 84.8
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 1.2e-34 150.6 116 64.7
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.0e-34 149.8 112 81.2
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 2.0e-34 149.8 110 85.5
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 2.0e-34 149.8 123 61.8
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 4.4e-34 148.7 111 84.7
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 5.7e-34 148.3 112 76.8
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 5.7e-34 148.3 112 83.9
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 5.7e-34 148.3 112 83.9
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 5.7e-34 148.3 111 82.0
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 7.5e-34 147.9 110 84.5
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 7.5e-34 147.9 113 82.3
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 9.8e-34 147.5 112 81.2
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.3e-33 147.1 111 83.8
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 1.3e-33 147.1 112 82.1
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.8e-33 146.0 111 81.1
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 3.7e-33 145.6 111 81.1
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 3.7e-33 145.6 110 82.7
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 3.7e-33 145.6 112 81.2
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 6.3e-33 144.8 116 81.0
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 1.4e-32 143.7 111 82.0
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 1.4e-32 143.7 112 82.1
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 1.8e-32 143.3 111 82.0
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 1.8e-32 143.3 110 82.7
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.8e-32 143.3 112 80.4
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 1.8e-32 143.3 111 66.7
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 3.1e-32 142.5 111 62.2
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 4.1e-32 142.1 112 80.4
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 5.4e-32 141.7 112 78.6
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 7.0e-32 141.4 112 81.2
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 1.2e-31 140.6 115 67.0
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 1.2e-31 140.6 112 80.4
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 1.2e-31 140.6 112 78.6
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 1.2e-31 140.6 112 80.4
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.6e-31 140.2 123 71.5
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 1.6e-31 140.2 107 74.8
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 2.0e-31 139.8 112 79.5
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 3.5e-31 139.0 112 75.0
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 4.5e-31 138.7 114 81.6
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 4.5e-31 138.7 114 81.6
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 4.5e-31 138.7 111 81.1
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 5.9e-31 138.3 109 80.7
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 7.7e-31 137.9 112 73.2
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 1.3e-30 137.1 112 78.6
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 1.3e-30 137.1 112 78.6
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 1.7e-30 136.7 113 78.8
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 2.3e-30 136.3 112 76.8
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 2.3e-30 136.3 114 77.2
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 5.0e-30 135.2 112 75.9
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 1.1e-29 134.0 112 76.8
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.1e-29 134.0 108 79.6
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 3.2e-29 132.5 113 75.2
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 7.2e-29 131.3 112 76.8
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 9.5e-29 131.0 114 71.1
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 9.5e-29 131.0 111 61.3
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 1.2e-28 130.6 109 78.9
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 6.1e-28 128.3 121 56.2
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 6.1e-28 128.3 108 57.4
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 1.4e-27 127.1 115 75.7
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 1.8e-27 126.7 115 72.2
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 9.8e-26 120.9 123 67.5
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 2.2e-25 119.8 115 58.3
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 3.7e-25 119.0 113 71.7
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 4.9e-25 118.6 113 70.8
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 6.3e-25 118.2 111 73.9
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 1.4e-24 117.1 82 75.6
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 3.1e-24 115.9 96 64.6
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 9.2e-24 114.4 115 62.6
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.6e-23 113.6 112 57.1
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 4.5e-23 112.1 206 46.1
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 1.7e-22 110.2 110 66.4
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 3.8e-22 109.0 122 60.7
PGSC0003DMG401006926 Solanum tuberosum HOM05D005515 ORTHO05D006620 3.8e-22 109.0 86 83.7
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.1e-21 107.5 89 70.8
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 3.3e-21 105.9 110 66.4
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 3.3e-21 105.9 116 65.5
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 3.3e-21 105.9 110 67.3
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 4.3e-21 105.5 88 64.8
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 4.3e-21 105.5 109 67.0
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 2.1e-20 103.2 87 60.9
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 4.7e-20 102.1 83 74.7
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 4.7e-20 102.1 86 64.0
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 8.0e-20 101.3 113 46.9
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 1.0e-19 100.9 88 59.1
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.3e-19 99.8 86 62.8
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 2.3e-19 99.8 88 77.3
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 3.0e-19 99.4 84 71.4
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 5.2e-19 98.6 115 64.3
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 6.8e-19 98.2 116 62.1
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 6.8e-19 98.2 112 51.8
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 6.8e-19 98.2 115 52.2
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 3.4e-18 95.9 114 64.0
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 3.4e-18 95.9 114 64.0
Cpa.g.sc43.50 Carica papaya HOM05D005515 ORTHO05D006620 4.4e-18 95.5 88 76.1
Ciclev10033394m.g Citrus clementina HOM05D005515 ORTHO05D006620 7.5e-18 94.7 87 77.0
SGA_v2.0_scaffold154G37170 Striga asiatica HOM05D005515 ORTHO05D006620 9.8e-18 94.4 114 62.3
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 2.2e-17 93.2 113 62.8
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 2.2e-17 93.2 132 44.7
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 3.7e-17 92.4 84 56.0
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 3.7e-17 92.4 55 78.2
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 1.1e-16 90.9 115 61.7
CDE02G3365 Ceratophyllum demersum HOM05D005515 ORTHO05D006620 1.4e-16 90.5 83 75.9
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 5.4e-16 88.6 114 61.4
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 1.2e-15 87.4 108 55.6
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 2.0e-15 86.7 73 58.9
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 2.3e-14 83.2 84 51.2
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 5.0e-14 82.0 89 53.9
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 8.6e-14 81.3 115 58.3
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 9.5e-13 77.8 88 45.5
A06p41490 Brassica napus HOM05D005515 ORTHO05D006620 1.6e-12 77.0 126 52.4
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 5.2e-11 72.0 105 58.1
Actinidia30652 Actinidia chinensis HOM05D005515 ORTHO05D006620 6.8e-11 71.6 60 61.7
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 2.0e-10 70.1 87 59.8
COL.COLO4_20393 Corchorus olitorius HOM05D005515 ORTHO05D006620 2.6e-10 69.7 57 63.2
BraA09t35966Z Brassica rapa HOM05D005515 ORTHO05D006620 4.4e-10 68.9 109 56.0
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 3.7e-09 65.9 82 56.1
Oeu006531.1 Olea europaea HOM05D005515 ORTHO05D006620 4.9e-09 65.5 61 55.7
CSS0003202 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 8.3e-09 64.7 51 64.7
CSS0037049 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 8.3e-09 64.7 51 64.7
Cre08.g370300 Chlamydomonas reinhardtii HOM05D005515 ORTHO05D006620 8.3e-09 64.7 89 37.1
Nn4g22340 Nelumbo nucifera HOM05D001716 ORTHO05D004234 1.6e-07 60.5 60 80.0
PRCOL_00000741 Prasinoderma coloniale HOM05D005515 ORTHO05D006620 6.0e-07 58.5 89 33.7
ClCG08G010060 Citrullus lanatus HOM05D005515 ORTHO05D006620 5.0e-06 55.5 88 40.9


User provided reference genes

Program Settings