Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 0.0e+00 1807.7 906 100.0
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 1.1e-221 774.2 929 50.3
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 8.2e-214 748.0 919 48.0
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 7.0e-213 745.0 934 47.8
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 8.0e-209 731.5 955 47.0
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 2.4e-205 719.9 939 46.6
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 9.1e-205 718.0 986 45.9
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 1.6e-201 707.2 899 47.3
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 1.5e-199 700.7 912 46.9
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 8.3e-198 694.9 904 46.7
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.1e-197 694.5 943 46.4
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 1.1e-197 694.5 907 47.6
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 4.1e-197 692.6 951 46.0
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 7.0e-197 691.8 902 47.3
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 7.0e-197 691.8 904 46.7
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 7.7e-196 688.3 903 46.8
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 1.6e-193 680.6 943 44.5
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 1.5e-191 674.1 906 46.5
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 1.7e-190 670.6 911 46.3
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.4e-189 667.5 946 45.1
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 9.2e-189 664.8 912 45.8
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 1.2e-188 664.5 949 44.8
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 1.6e-188 664.1 904 46.3
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 2.8e-185 653.3 940 45.0
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 4.7e-185 652.5 932 44.6
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 8.9e-184 648.3 815 49.4
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 2.9e-182 643.3 947 43.1
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 2.4e-181 640.2 936 42.5
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 3.9e-179 632.9 936 41.9
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 5.0e-179 632.5 906 43.7
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 1.6e-177 627.5 933 43.0
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 4.7e-177 625.9 936 43.6
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 1.4e-176 624.4 907 42.2
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 4.0e-176 622.9 910 42.4
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 4.4e-175 619.4 937 41.1
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 2.0e-172 610.5 939 41.0
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.5e-172 609.8 930 42.4
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 8.6e-171 605.1 937 42.0
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 1.1e-170 604.7 929 42.2
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 1.9e-170 604.0 1034 39.4
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 4.3e-170 602.8 936 41.9
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 4.7e-169 599.4 917 41.9
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 8.1e-169 598.6 934 40.3
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 2.9e-166 590.1 961 41.0
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 3.7e-166 589.7 906 41.4
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 9.2e-165 585.1 785 46.4
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 9.2e-165 585.1 730 47.7
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.6e-164 584.3 732 47.8
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 7.8e-164 582.0 898 42.1
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 1.7e-163 580.9 819 44.1
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 2.3e-163 580.5 952 40.8
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.3e-163 580.5 925 40.1
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 5.1e-163 579.3 936 38.8
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.2e-161 574.7 930 39.5
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 8.1e-161 572.0 838 42.6
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 1.8e-160 570.9 790 44.7
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 4.0e-160 569.7 998 39.6
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 1.2e-159 568.2 995 38.4
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 2.2e-158 563.9 924 40.3
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 2.2e-158 563.9 795 43.6
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 2.9e-158 563.5 819 43.3
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 1.1e-157 561.6 937 39.6
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.4e-157 560.5 939 38.9
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 5.4e-157 559.3 966 39.0
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.1e-156 557.4 944 38.5
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 2.7e-156 557.0 956 38.6
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 2.3e-155 553.9 915 40.2
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 5.6e-154 549.3 1009 37.6
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 7.3e-154 548.9 981 38.1
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 9.6e-154 548.5 928 39.5
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.2e-153 548.1 916 38.8
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 8.1e-153 545.4 975 37.8
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.0e-152 543.1 932 38.9
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 6.9e-152 542.3 936 38.4
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 6.9e-152 542.3 911 39.2
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.6e-151 540.4 975 38.4
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 4.4e-151 539.7 926 40.3
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 9.9e-151 538.5 995 38.0
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 1.9e-149 534.3 888 39.6
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.4e-149 533.9 833 42.3
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 3.2e-149 533.5 924 38.4
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 1.6e-148 531.2 921 38.3
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 2.7e-148 530.4 1033 37.9
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 1.7e-147 527.7 934 39.0
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 7.3e-146 522.3 737 43.8
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 1.1e-144 518.5 936 38.5
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.4e-144 518.1 932 38.5
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 2.4e-144 517.3 937 38.1
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 3.5e-140 503.4 962 36.9
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.5e-140 503.4 966 37.2
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 1.3e-139 501.5 877 39.1
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 1.8e-139 501.1 760 42.8
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.5e-138 498.0 893 39.5
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.5e-138 498.0 893 39.5
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 7.4e-138 495.7 1004 36.1
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 3.1e-136 490.3 770 41.7
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 9.0e-136 488.8 843 39.1
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.0e-131 475.3 725 44.7
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 2.3e-131 474.2 794 39.7
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.9e-131 473.4 371 62.3
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.9e-130 471.1 735 41.5
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 5.6e-130 469.5 793 38.7
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 3.1e-120 437.2 919 35.7
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.5e-119 434.9 473 48.8
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 2.3e-115 421.0 921 35.5
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 5.1e-115 419.9 362 60.2
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 3.4e-111 407.1 394 52.3
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 5.0e-110 403.3 731 37.3
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 2.7e-100 370.9 419 49.2
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.0e-99 367.5 778 35.0
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.0e-91 340.5 742 35.6
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 5.7e-74 283.5 825 28.2
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 9.2e-72 276.2 499 37.1
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.9e-69 268.5 267 52.8
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 4.7e-68 263.8 386 37.6
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 3.4e-66 257.7 380 37.6
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.7e-49 202.2 515 34.6
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 5.4e-48 197.2 156 61.5
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 3.5e-47 194.5 833 27.1
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 6.8e-43 180.3 741 26.9
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.5e-42 179.1 741 26.9
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 4.9e-33 147.5 631 28.1
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 6.2e-28 130.6 274 32.5
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 4.9e-25 120.9 237 34.6
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 5.4e-24 117.5 293 33.1
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 5.1e-22 110.9 230 30.9
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 9.3e-16 90.1 195 32.8
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.1e-11 76.6 103 39.8
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 7.6e-10 70.5 87 42.5
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 2.9e-09 68.6 191 34.0
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 2.9e-09 68.6 93 44.1
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 2.5e-08 65.5 141 35.5
SHI12870 Sapria himalayana HOM05D005064 ORTHO05D006611 2.5e-08 65.5 154 31.2
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 7.1e-08 63.9 116 38.8
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 1.8e-06 59.3 47 63.8


User provided reference genes

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