Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 3.5e-118 429.5 490 100.0
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 2.9e-72 276.9 486 71.0
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 7.9e-70 268.9 488 69.9
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 5.7e-68 262.7 484 72.7
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 3.7e-67 260.0 488 71.5
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 1.2e-65 255.0 488 66.8
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 2.0e-65 254.2 488 68.0
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 2.6e-65 253.8 488 67.8
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 7.7e-65 252.3 488 63.5
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 1.0e-64 251.9 488 67.4
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 1.0e-64 251.9 488 63.3
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 2.9e-64 250.4 488 63.5
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 6.5e-64 249.2 488 69.7
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 1.1e-63 248.4 488 65.6
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 1.4e-63 248.1 488 65.6
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 1.4e-63 248.1 489 67.3
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 2.5e-63 247.3 488 63.3
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 3.2e-63 246.9 488 67.2
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 3.2e-63 246.9 488 68.0
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 5.5e-63 246.1 488 67.0
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 5.5e-63 246.1 488 67.2
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 7.2e-63 245.7 486 67.5
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 1.2e-62 245.0 488 65.2
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 2.7e-62 243.8 485 66.6
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 2.7e-62 243.8 488 73.0
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 1.0e-61 241.9 488 70.5
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 1.4e-61 241.5 488 76.2
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 1.1e-60 238.4 488 69.7
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 1.1e-60 238.4 488 67.2
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 1.1e-60 238.4 497 68.6
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 3.3e-60 236.9 176 66.5
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 7.4e-60 235.7 488 67.8
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 7.4e-60 235.7 488 69.1
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 1.3e-59 235.0 484 69.4
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 1.7e-59 234.6 489 67.3
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 2.8e-59 233.8 488 65.2
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 6.3e-59 232.6 489 67.5
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 6.3e-59 232.6 488 69.7
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 8.2e-59 232.3 483 68.7
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 4.1e-58 229.9 488 67.8
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 9.1e-58 228.8 487 73.1
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 9.1e-58 228.8 488 68.0
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 4.5e-57 226.5 488 67.0
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 4.5e-57 226.5 484 68.0
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 1.0e-56 225.3 488 69.3
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 1.3e-56 224.9 489 69.5
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 1.3e-56 224.9 484 73.3
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 2.2e-56 224.2 488 67.8
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 2.2e-56 224.2 175 62.9
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 3.8e-56 223.4 482 67.6
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 5.0e-56 223.0 489 68.3
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 6.5e-56 222.6 489 65.4
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 1.1e-55 221.9 485 70.7
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 1.4e-55 221.5 176 63.1
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 1.4e-55 221.5 176 63.1
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 2.5e-55 220.7 488 66.8
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 3.2e-55 220.3 175 61.1
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 3.2e-55 220.3 175 63.4
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 5.5e-55 219.5 176 62.5
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 9.4e-55 218.8 171 62.0
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 1.6e-54 218.0 175 63.4
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 2.1e-54 217.6 486 65.6
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 3.6e-54 216.9 175 61.1
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 1.4e-53 214.9 176 59.7
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 1.8e-53 214.5 489 69.7
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 2.3e-53 214.2 175 61.7
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 3.9e-53 213.4 175 62.3
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 1.5e-52 211.5 488 68.2
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 2.0e-52 211.1 175 58.9
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 4.4e-52 209.9 176 58.5
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 2.8e-51 207.2 167 62.3
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 4.8e-51 206.5 173 60.7
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 4.8e-51 206.5 450 77.3
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 8.2e-51 205.7 197 54.8
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 3.1e-50 203.8 489 67.7
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 3.1e-50 203.8 509 41.3
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 3.1e-50 203.8 520 63.5
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 7.7e-49 199.1 176 56.2
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 1.1e-47 195.3 163 59.5
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 3.2e-47 193.7 489 67.3
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 6.1e-46 189.5 176 54.5
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 1.1e-44 185.3 150 62.7
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 9.7e-44 182.2 177 51.4
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 6.3e-43 179.5 487 58.7
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 2.0e-41 174.5 177 49.7
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 3.5e-33 147.1 110 63.6
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 2.3e-24 117.9 112 52.7
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 4.7e-22 110.2 110 53.6
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.8e-21 108.2 118 68.6
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 6.8e-21 106.3 118 67.8
DCAR_025359 Daucus carota HOM05D007322 ORTHO05D009029 8.9e-21 105.9 112 69.6
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 1.1e-18 99.0 118 63.6
Nitab4.5_0003788g0010 Nicotiana tabacum HOM05D007322 ORTHO05D009029 9.2e-18 95.9 111 68.5
Peaxi162Scf00152g01436 Petunia axillaris HOM05D007322 ORTHO05D009029 5.9e-17 93.2 111 66.7
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 1.3e-16 92.0 119 42.0
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 1.2e-14 85.5 99 73.7
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 5.8e-12 76.6 66 57.6
Cpa.g.c31488 Carica papaya HOM05D007322 ORTHO05D009029 6.0e-09 66.6 101 37.6


User provided reference genes

Program Settings