Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 2.3e-276 954.9 476 100.0
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 9.7e-190 667.2 450 74.4
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 5.3e-188 661.4 450 74.7
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 6.1e-184 647.9 456 72.1
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 2.0e-182 642.9 457 71.6
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.3e-181 640.2 456 71.5
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 1.4e-180 636.7 435 73.6
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 1.6e-179 633.3 454 70.0
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 2.2e-178 629.4 455 70.1
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 2.9e-178 629.0 453 69.8
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 2.9e-178 629.0 452 71.0
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 1.1e-177 627.1 424 75.0
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 1.9e-177 626.3 424 75.0
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 3.2e-177 625.5 454 71.6
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 4.2e-177 625.2 468 68.4
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 5.5e-177 624.8 460 69.6
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 7.2e-177 624.4 454 70.0
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 1.2e-176 623.6 421 76.0
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 2.1e-176 622.9 419 75.2
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 1.4e-175 620.2 456 71.1
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 1.8e-175 619.8 451 70.3
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 5.2e-175 618.2 453 68.9
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 8.8e-175 617.5 456 68.6
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 8.8e-175 617.5 455 70.3
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 2.0e-174 616.3 455 69.2
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 2.0e-174 616.3 451 70.3
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 3.3e-174 615.5 455 68.4
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 3.3e-174 615.5 455 70.3
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 3.3e-174 615.5 455 70.3
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 5.7e-174 614.8 478 66.7
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 1.3e-173 613.6 455 70.1
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 2.8e-173 612.5 455 68.1
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 1.4e-172 610.1 452 70.1
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 3.5e-171 605.5 485 65.6
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 7.7e-171 604.4 485 65.4
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 1.0e-170 604.0 477 65.8
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 1.3e-170 603.6 455 68.1
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.3e-170 603.6 389 76.6
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 3.8e-170 602.1 390 77.2
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 6.5e-170 601.3 451 68.7
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 1.5e-169 600.1 457 67.8
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 2.5e-169 599.4 466 67.8
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 5.5e-169 598.2 451 67.6
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 1.2e-168 597.0 459 66.9
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 6.1e-168 594.7 455 67.3
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.0e-167 594.0 381 76.9
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 3.0e-167 592.4 365 80.8
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 3.0e-167 592.4 458 65.3
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 3.0e-167 592.4 396 75.5
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 5.2e-167 591.7 399 74.7
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 2.2e-165 586.3 409 72.6
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 8.3e-165 584.3 509 61.7
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 1.1e-164 583.9 453 65.6
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 9.1e-164 580.9 415 70.1
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 2.0e-163 579.7 428 68.7
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 2.9e-162 575.9 431 68.7
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 4.2e-161 572.0 453 64.7
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 5.5e-161 571.6 461 63.8
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 7.2e-161 571.2 432 67.6
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 3.6e-160 568.9 398 71.4
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 4.7e-160 568.5 395 71.6
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 1.0e-159 567.4 393 72.3
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 1.4e-159 567.0 364 76.9
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 2.3e-159 566.2 465 62.8
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 4.0e-159 565.5 419 68.0
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 5.2e-159 565.1 392 71.7
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 2.0e-158 563.1 418 69.4
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 5.7e-158 561.6 427 67.0
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 1.3e-157 560.5 458 65.3
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 1.3e-157 560.5 397 70.5
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 2.8e-157 559.3 427 66.5
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 8.3e-157 557.8 422 67.1
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 2.4e-156 556.2 398 71.1
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 2.9e-154 549.3 393 69.2
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 6.6e-154 548.1 369 74.5
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 9.5e-153 544.3 422 65.4
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 1.6e-152 543.5 435 64.6
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 2.8e-152 542.7 474 61.2
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 1.0e-151 540.8 376 73.1
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 3.0e-151 539.3 464 63.1
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 5.2e-151 538.5 471 62.0
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 1.5e-150 537.0 455 62.9
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 2.0e-150 536.6 464 62.9
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 2.0e-150 536.6 464 62.9
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 2.0e-150 536.6 455 62.9
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 2.6e-150 536.2 479 61.0
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.3e-149 533.9 440 64.1
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 4.1e-148 528.9 475 61.3
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 5.4e-148 528.5 386 69.4
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 2.5e-145 519.6 428 62.4
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 6.2e-144 515.0 388 68.3
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 1.4e-135 487.3 448 57.4
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 1.1e-132 477.6 376 65.2
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 1.7e-130 470.3 352 69.3
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 8.6e-130 468.0 379 63.6
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.6e-104 384.0 365 56.7
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 7.6e-102 375.2 297 67.3
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.3e-90 337.8 263 68.1
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 5.9e-86 322.4 232 72.0
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 2.3e-82 310.5 388 44.8
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 2.5e-81 307.0 167 86.8
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 1.5e-78 297.7 309 55.3
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 1.2e-75 288.1 413 40.2
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 7.4e-73 278.9 267 56.9
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 1.1e-68 265.0 199 66.8
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 3.7e-64 250.0 386 37.8
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 1.0e-61 241.9 464 34.3
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 9.7e-57 225.3 125 82.4
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 2.8e-56 223.8 191 59.7
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 1.8e-55 221.1 125 84.0
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 3.4e-49 200.3 177 57.1
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 6.1e-43 179.5 211 44.1
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 2.3e-34 151.0 80 83.8
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 9.5e-28 129.0 79 74.7
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 2.1e-27 127.9 221 38.9
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.3e-24 118.6 69 73.9
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 4.9e-24 116.7 110 60.9
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 4.1e-23 113.6 85 62.4
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 1.3e-16 92.0 51 80.4
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 1.3e-13 82.0 93 45.2
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 3.0e-13 80.9 45 73.3
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 1.4e-10 72.0 131 42.7
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 1.4e-07 62.0 32 90.6
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 2.4e-07 61.2 35 82.9


User provided reference genes

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