Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0004740 Simmondsia chinensis HOM05D002561 ORTHO05D006466 5.8e-200 700.7 348 100.0
Sc21g0003230 Simmondsia chinensis HOM05D002561 ORTHO05D006466 2.9e-167 592.0 348 86.5
Sc24g0000990 Simmondsia chinensis HOM05D002561 ORTHO05D006466 7.2e-158 560.8 453 67.8
Ah.03g138410 Amaranthus hybridus HOM05D002561 ORTHO05D006466 3.3e-147 525.4 453 62.9
Manes.13G142500 Manihot esculenta HOM05D002561 ORTHO05D006466 1.0e-143 513.8 421 65.1
Hund07915 Selenicereus undatus HOM05D002561 ORTHO05D006466 5.0e-143 511.5 453 61.8
GSVIVG01020601001 Vitis vinifera HOM05D002561 ORTHO05D006466 1.9e-142 509.6 453 61.1
Dinv07536 Davidia involucrata HOM05D002561 ORTHO05D006466 2.7e-141 505.8 453 60.9
Dinv10164 Davidia involucrata HOM05D002561 ORTHO05D006466 2.7e-141 505.8 453 61.1
MSTRG.15131 Avicennia marina HOM05D002561 ORTHO05D006466 6.1e-141 504.6 453 61.1
Potri.017G014700 Populus trichocarpa HOM05D002561 ORTHO05D006466 6.1e-141 504.6 453 60.5
CSS0024007 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D006466 1.8e-140 503.1 453 60.3
Eucgr.K01052 Eucalyptus grandis HOM05D002561 ORTHO05D006466 1.8e-140 503.1 453 60.3
Nn1g06426 Nelumbo nucifera HOM05D002561 ORTHO05D006466 3.9e-140 501.9 453 60.7
EL10Ac9g20811 Beta vulgaris HOM05D002561 ORTHO05D006466 2.0e-139 499.6 453 60.5
Potri.007G137300 Populus trichocarpa HOM05D002561 ORTHO05D006466 2.0e-139 499.6 453 60.0
TAR624G0407 Trochodendron aralioides HOM05D002561 ORTHO05D006466 2.6e-139 499.2 454 61.0
Ciclev10015209m.g Citrus clementina HOM05D002561 ORTHO05D006466 4.4e-139 498.4 454 60.4
Gohir.D02G177700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 9.7e-139 497.3 454 60.4
Gorai.005G199500 Gossypium raimondii HOM05D002561 ORTHO05D006466 9.7e-139 497.3 454 60.4
Cc05_g07670 Coffea canephora HOM05D002561 ORTHO05D006466 2.2e-138 496.1 453 59.8
Actinidia11101 Actinidia chinensis HOM05D002561 ORTHO05D006466 1.1e-137 493.8 453 59.8
CsaV3_7G003080 Cucumis sativus L. HOM05D002561 ORTHO05D006466 1.1e-137 493.8 452 59.5
Gohir.A03G154700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 1.1e-137 493.8 454 59.9
MELO3C018869.2 Cucumis melo HOM05D002561 ORTHO05D006466 2.4e-137 492.7 452 59.5
Cfa014656 Carpinus fangiana HOM05D002561 ORTHO05D006466 3.1e-137 492.3 453 59.2
MBI07_g29117_MAGBIO Magnolia biondii HOM05D002561 ORTHO05D006466 3.1e-137 492.3 453 59.2
CANSAT64G1696 Cannabis sativa HOM05D002561 ORTHO05D006466 5.3e-137 491.5 453 59.6
Cpa.g.sc83.89 Carica papaya HOM05D002561 ORTHO05D006466 7.0e-137 491.1 453 58.9
COL.COLO4_28034 Corchorus olitorius HOM05D002561 ORTHO05D006466 7.0e-137 491.1 453 59.4
Thecc.02G185400 Theobroma cacao HOM05D002561 ORTHO05D006466 1.5e-136 490.0 453 59.8
CiPaw.03G181000 Carya illinoinensis HOM05D002561 ORTHO05D006466 4.5e-136 488.4 453 59.4
Nitab4.5_0000621g0150 Nicotiana tabacum HOM05D002561 ORTHO05D006466 1.0e-135 487.3 453 60.3
Sed0023046 Sechium edule HOM05D002561 ORTHO05D006466 1.3e-135 486.9 452 58.6
Duzib052G0349 Durio zibethinus HOM05D002561 ORTHO05D006466 5.0e-135 485.0 454 58.8
Sp7g26430 Schrenkiella parvula HOM05D002561 ORTHO05D006466 5.0e-135 485.0 453 59.2
Sabra17G0011900 Salix brachista HOM05D002561 ORTHO05D006466 8.5e-135 484.2 486 55.8
RcHm_v2.0_Chr6g0267881 Rosa chinensis HOM05D002561 ORTHO05D006466 1.1e-134 483.8 453 57.8
ECA240G2497 Erigeron canadensis HOM05D002561 ORTHO05D006466 4.2e-134 481.9 453 58.1
Lsat_1_v5_gn_4_64440 Lactuca sativa HOM05D002561 ORTHO05D006466 4.2e-134 481.9 450 58.2
vmacro12361 Vaccinium macrocarpon HOM05D002561 ORTHO05D006466 4.2e-134 481.9 469 57.1
PGR142G4043 Punica granatum HOM05D002561 ORTHO05D006466 7.2e-134 481.1 454 57.9
Lj8C108T5 Lonicera japonica HOM05D002561 ORTHO05D006466 9.4e-134 480.7 453 58.7
AL7G24110 Arabidopsis lyrata HOM05D002561 ORTHO05D006466 1.6e-133 479.9 453 58.7
Aa31LG2G21970 Aethionema arabicum HOM05D002561 ORTHO05D006466 3.6e-133 478.8 453 58.5
Migut.D00238 Erythranthe guttata HOM05D002561 ORTHO05D006466 3.6e-133 478.8 450 58.2
THA.LOC104804051 Tarenaya hassleriana HOM05D002561 ORTHO05D006466 3.6e-133 478.8 453 57.8
Carub.0007s1225 Capsella rubella HOM05D002561 ORTHO05D006466 4.7e-133 478.4 453 58.3
CARHR236220 Cardamine hirsuta HOM05D002561 ORTHO05D006466 4.7e-133 478.4 453 57.4
Prupe.1G573700 Prunus persica HOM05D002561 ORTHO05D006466 4.7e-133 478.4 448 58.3
AT4G28450 Arabidopsis thaliana HOM05D002561 ORTHO05D006466 8.0e-133 477.6 453 58.7
Nitab4.5_0004546g0040 Nicotiana tabacum HOM05D002561 ORTHO05D006466 1.0e-132 477.2 464 58.2
Prupe.6G177000 Prunus persica HOM05D002561 ORTHO05D006466 1.0e-132 477.2 449 58.4
HanXRQChr05g0140561 Helianthus annuus HOM05D002561 ORTHO05D006466 1.8e-132 476.5 454 57.7
DCAR_013032 Daucus carota HOM05D002561 ORTHO05D006466 4.0e-132 475.3 447 58.8
ATR0665G052 Amborella trichopoda HOM05D002561 ORTHO05D006466 1.1e-131 473.8 453 57.0
PGSC0003DMG401009395 Solanum tuberosum HOM05D002561 ORTHO05D006466 1.1e-131 473.8 453 57.2
Sopen07g027630 Solanum pennellii HOM05D002561 ORTHO05D006466 4.4e-131 471.9 453 57.2
HPP92_000278 Vanilla planifolia HOM05D002561 ORTHO05D006466 5.7e-131 471.5 453 58.1
Solyc07g053660.3 Solanum lycopersicum HOM05D002561 ORTHO05D006466 1.3e-130 470.3 453 57.0
Glyma.02G251700 Glycine max HOM05D002561 ORTHO05D006466 1.7e-130 469.9 453 56.1
FAN20G3107 Fragaria x ananassa HOM05D002561 ORTHO05D006466 2.2e-130 469.5 453 57.2
FAN27G0984 Fragaria x ananassa HOM05D002561 ORTHO05D006466 2.2e-130 469.5 453 57.0
Medtr1g022960 Medicago truncatula HOM05D002561 ORTHO05D006466 2.2e-130 469.5 453 56.5
Atru.chr6.2875 Acer truncatum HOM05D002561 ORTHO05D006466 8.2e-130 467.6 432 58.8
FvH4_2g10410 Fragaria vesca HOM05D002561 ORTHO05D006466 8.2e-130 467.6 453 57.0
ClCG02G002370 Citrullus lanatus HOM05D002561 ORTHO05D006466 1.1e-129 467.2 452 57.7
Phvul.006G037700 Phaseolus vulgaris HOM05D002561 ORTHO05D006466 1.1e-129 467.2 453 55.0
PSO210G7210 Papaver somniferum HOM05D002561 ORTHO05D006466 3.1e-129 465.7 453 55.6
BolC7t46099H Brassica oleracea HOM05D002561 ORTHO05D006466 4.1e-129 465.3 454 56.8
Lalb_Chr25g0280621 Lupinus albus HOM05D002561 ORTHO05D006466 4.1e-129 465.3 453 55.2
BcaC06g32621 Brassica carinata HOM05D002561 ORTHO05D006466 1.2e-128 463.8 453 56.7
C07p56220 Brassica napus HOM05D002561 ORTHO05D006466 1.2e-128 463.8 454 55.5
unitig_85.g27364 Utricularia gibba HOM05D002561 ORTHO05D006466 1.2e-128 463.8 423 59.8
A03p58100 Brassica napus HOM05D002561 ORTHO05D006466 2.7e-128 462.6 454 55.3
BraA03t14876Z Brassica rapa HOM05D002561 ORTHO05D006466 2.7e-128 462.6 454 55.3
arahy.Tifrunner.gnm1.ann1.TSZ6TX Arachis hypogaea HOM05D002561 ORTHO05D006466 7.7e-128 461.1 453 56.5
FAN15G2087 Fragaria x ananassa HOM05D002561 ORTHO05D006466 7.7e-128 461.1 451 56.5
Lj3g0012051 Lotus japonicus HOM05D002561 ORTHO05D006466 1.0e-127 460.7 455 55.6
Thhalv10025176m.g Eutrema salsugineum HOM05D002561 ORTHO05D006466 2.2e-127 459.5 454 55.7
Sabra07G0110300 Salix brachista HOM05D002292 ORTHO05D003256 2.9e-127 459.1 467 55.9
MD08G1220200 Malus domestica HOM05D002561 ORTHO05D006466 5.0e-127 458.4 449 55.5
TWI14G0319 Tripterygium wilfordii HOM05D002561 ORTHO05D006466 5.5e-126 454.9 454 56.6
Zm00001eb064830 Zea mays HOM05D002561 ORTHO05D006466 9.4e-126 454.1 453 55.6
CDE03G0236 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 8.0e-125 451.1 451 55.0
Ca_13381_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 3.0e-124 449.1 432 56.7
Ca_30047_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 3.0e-124 449.1 432 56.7
PSO782G0979 Papaver somniferum HOM05D002561 ORTHO05D006466 5.2e-124 448.4 456 53.3
TWI59G1106 Tripterygium wilfordii HOM05D002561 ORTHO05D006466 2.6e-123 446.0 453 55.6
Psat6g009760 Pisum sativum HOM05D002561 ORTHO05D006466 1.7e-122 443.4 452 55.5
CAN.G209.6 Capsicum annuum HOM05D002561 ORTHO05D006466 1.1e-121 440.7 453 54.5
PSO832G1390 Papaver somniferum HOM05D002561 ORTHO05D006466 9.1e-121 437.6 453 53.6
QL08p040074 Quercus lobata HOM05D002561 ORTHO05D006466 2.2e-119 433.0 508 49.0
TPR.G22970 Trifolium pratense HOM05D002561 ORTHO05D006466 2.9e-119 432.6 430 54.0
Peaxi162Scf00845g00022 Petunia axillaris HOM05D002561 ORTHO05D006466 1.1e-118 430.6 459 53.8
Rhsim06G0138000 Rhododendron simsii HOM05D002561 ORTHO05D006466 3.6e-117 425.6 495 50.3
Aqoxy4G00646 Aquilegia oxysepala HOM05D002561 ORTHO05D006466 1.2e-115 420.6 453 51.2
SGA_v2.0_scaffold70G23496 Striga asiatica HOM05D002561 ORTHO05D006466 1.3e-114 417.2 453 52.8
arahy.Tifrunner.gnm1.ann1.UE4GYS Arachis hypogaea HOM05D002561 ORTHO05D006466 5.9e-112 408.3 453 51.7
AUR62008772 Chenopodium quinoa HOM05D002561 ORTHO05D006466 1.0e-111 407.5 410 55.9
AagrBONN_evm.TU.Sc2ySwM_117.187 Anthoceros agrestis HOM05D002561 ORTHO05D006466 1.4e-108 397.1 452 48.2
Dinv00035 Davidia involucrata HOM05D002561 ORTHO05D006466 1.8e-108 396.7 232 84.5
TPR.G30494 Trifolium pratense HOM05D002561 ORTHO05D006466 6.8e-108 394.8 469 48.4
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 3.7e-106 389.0 451 48.1
SMO347G0106 Selaginella moellendorffii HOM05D002561 ORTHO05D006466 8.9e-100 367.9 452 46.5
Glyma.14G065100 Glycine max HOM05D002561 ORTHO05D006466 2.0e-99 366.7 232 76.7
Sc04g0004800 Simmondsia chinensis HOM05D002561 ORTHO05D006466 1.5e-94 350.5 210 84.3
MCO01G363 Micromonas commoda HOM05D002561 ORTHO05D006466 9.5e-94 347.8 460 42.4
MD15G1410700 Malus domestica HOM05D002561 ORTHO05D006466 4.4e-91 339.0 228 73.2
PSO478G0717 Papaver somniferum HOM05D002561 ORTHO05D006466 6.6e-87 325.1 232 69.0
PRCOL_00005495 Prasinoderma coloniale HOM05D002561 ORTHO05D006466 6.6e-87 325.1 456 40.8
Cre07.g318702 Chlamydomonas reinhardtii HOM05D002561 ORTHO05D006466 9.9e-83 311.2 451 41.5
Actinidia11004 Actinidia chinensis HOM05D002561 ORTHO05D006466 1.9e-81 307.0 344 51.5
AUR62025466 Chenopodium quinoa HOM05D002561 ORTHO05D006466 4.6e-80 302.4 369 49.1
Sc04g0004780 Simmondsia chinensis HOM05D002561 ORTHO05D006466 4.6e-80 302.4 190 84.2
Hma1.2p1_0002F.1_g002200 Hydrangea macrophylla HOM05D002561 ORTHO05D006466 1.9e-78 297.0 452 42.5
TAR626G1404 Trochodendron aralioides HOM05D002561 ORTHO05D006466 2.9e-74 283.1 392 46.9
FAN07G0711 Fragaria x ananassa HOM05D002561 ORTHO05D006466 1.1e-73 281.2 160 83.1
CBR_g34460 Chara braunii HOM05D002561 ORTHO05D006466 1.1e-68 264.6 407 41.0
Sc04g0004770 Simmondsia chinensis HOM05D002561 ORTHO05D006466 6.0e-64 248.8 187 69.5
Pp3c9_6000 Physcomitrium patens HOM05D002561 ORTHO05D006466 8.7e-55 218.4 312 41.7
COL.COLO4_18046 Corchorus olitorius HOM05D002561 ORTHO05D006466 1.3e-53 214.5 199 60.8
MBI07_g29113_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D003010 6.3e-45 185.7 229 50.7
FvH4_4g06150 Fragaria vesca HOM05D002561 ORTHO05D006466 7.6e-43 178.7 120 75.8
Os01g0238900 Oryza sativa ssp. japonica HOM05D002561 ORTHO05D006466 1.4e-41 174.5 271 42.1
Haze_13235 Corylus avellana HOM05D002561 ORTHO05D006466 1.1e-36 158.3 90 82.2
Haze_13238 Corylus avellana HOM05D002561 ORTHO05D006466 1.1e-36 158.3 90 82.2
Oeu016012.1 Olea europaea HOM05D002561 ORTHO05D006466 1.7e-34 151.0 89 80.9
FAN24G2704 Fragaria x ananassa HOM05D002561 ORTHO05D006466 3.8e-34 149.8 90 76.7
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 7.2e-33 145.6 242 37.2
MD15G1410600 Malus domestica HOM05D002561 ORTHO05D006466 7.2e-33 145.6 90 75.6
BcaB03g16272 Brassica carinata HOM05D002561 ORTHO05D006466 1.2e-16 91.7 54 79.6
FAN07G1962 Fragaria x ananassa HOM05D002561 ORTHO05D006466 1.7e-13 81.3 89 49.4
FAN27G3439 Fragaria x ananassa HOM05D002561 ORTHO05D014694 9.1e-12 75.5 74 50.0
VMungo1080G0335 Vigna mungo HOM05D002561 ORTHO05D017730 4.2e-09 66.6 36 80.6
VMungo1215G0093 Vigna mungo HOM05D000467 ORTHO05D017730 4.2e-09 66.6 36 80.6
VMungo0251G0719 Vigna mungo HOM05D000467 ORTHO05D017730 7.2e-09 65.9 36 80.6
HanXRQChr16g0505891 Helianthus annuus HOM05D002561 ORTHO05D006466 2.1e-08 64.3 64 62.5
VMungo1080G0258 Vigna mungo HOM05D000467 ORTHO05D017730 2.7e-08 63.9 36 80.6


User provided reference genes

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