Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 2.4e-295 1018.1 500 100.0
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 3.9e-189 665.2 471 70.5
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 9.5e-188 660.6 472 68.9
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 2.1e-187 659.4 472 70.3
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 7.5e-185 651.0 472 67.6
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 1.4e-175 620.2 476 66.2
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 4.3e-172 608.6 472 63.1
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 4.7e-171 605.1 475 63.8
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 6.2e-171 604.7 473 63.6
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 8.1e-171 604.4 457 66.7
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 1.1e-170 604.0 471 65.0
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 2.4e-170 602.8 472 64.8
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 4.0e-170 602.1 477 64.4
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 5.3e-170 601.7 478 65.7
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.2e-169 600.5 506 61.7
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 7.6e-169 597.8 477 64.4
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 4.9e-168 595.1 473 64.1
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 4.9e-168 595.1 478 64.2
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 3.2e-167 592.4 477 64.8
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 3.2e-167 592.4 477 63.3
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 4.2e-167 592.0 479 63.5
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 7.1e-167 591.3 475 62.7
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 9.3e-167 590.9 478 64.6
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 9.3e-167 590.9 472 63.6
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 1.2e-166 590.5 479 63.0
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 1.6e-166 590.1 473 63.6
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 3.5e-166 589.0 474 63.3
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 7.8e-166 587.8 483 62.9
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 3.9e-165 585.5 478 63.8
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 5.1e-165 585.1 476 61.6
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 6.6e-165 584.7 474 63.7
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 8.7e-165 584.3 486 61.9
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 1.5e-164 583.6 472 62.9
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 1.9e-164 583.2 475 61.7
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 1.9e-164 583.2 473 64.3
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 2.5e-164 582.8 477 62.3
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 3.3e-164 582.4 474 62.4
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 2.8e-163 579.3 487 61.2
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 4.8e-163 578.6 474 62.2
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 1.1e-162 577.4 473 61.9
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 1.4e-162 577.0 482 62.0
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 2.4e-162 576.2 481 61.1
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 5.3e-162 575.1 473 61.7
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 6.9e-162 574.7 473 61.5
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 1.7e-160 570.1 448 64.1
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 2.2e-160 569.7 466 61.4
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 3.8e-160 568.9 472 61.2
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 1.4e-159 567.0 472 61.9
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 1.9e-159 566.6 479 60.8
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 4.2e-159 565.5 470 60.6
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 4.2e-159 565.5 485 63.1
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 5.4e-159 565.1 469 61.8
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 5.4e-159 565.1 447 64.2
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 2.1e-158 563.1 448 62.1
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 2.7e-158 562.8 470 60.4
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 4.6e-158 562.0 474 60.8
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 7.9e-158 561.2 482 61.0
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 2.3e-157 559.7 470 59.1
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 5.1e-157 558.5 486 58.4
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 8.7e-157 557.8 472 59.7
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 1.1e-156 557.4 485 57.7
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 1.1e-156 557.4 470 61.3
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 2.5e-156 556.2 480 59.0
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 4.3e-156 555.4 481 58.6
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 6.2e-155 551.6 483 58.0
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 1.8e-154 550.1 445 60.2
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 4.0e-154 548.9 450 60.4
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 9.0e-154 547.7 448 60.9
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 2.6e-153 546.2 483 57.8
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 4.5e-153 545.4 473 59.0
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 2.2e-152 543.1 485 57.3
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 2.2e-152 543.1 483 57.8
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 2.2e-152 543.1 492 58.5
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 2.9e-152 542.7 485 57.3
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 2.5e-151 539.7 489 57.1
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 1.8e-149 533.5 473 58.8
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 4.8e-147 525.4 446 60.8
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 4.0e-146 522.3 425 62.1
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 7.6e-145 518.1 474 58.2
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 3.2e-143 512.7 424 60.6
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 2.2e-139 500.0 491 54.8
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 1.6e-134 483.8 385 60.5
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 1.0e-133 481.1 373 65.1
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 1.2e-126 457.6 458 50.0
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 3.3e-124 449.5 319 71.2
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 1.5e-121 440.7 419 50.6
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 5.9e-121 438.7 338 63.9
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 7.7e-121 438.3 382 59.4
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 2.0e-113 413.7 315 64.4
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 7.7e-113 411.8 467 44.8
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 5.4e-106 389.0 423 48.2
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 2.6e-92 343.6 387 45.2
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 1.1e-90 338.2 435 41.4
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 1.3e-88 331.3 377 44.8
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.9e-87 327.4 256 66.8
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 1.8e-85 320.9 360 47.8
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 2.3e-85 320.5 274 60.9
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 3.1e-85 320.1 398 42.2
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 3.1e-85 320.1 257 58.4
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 5.2e-85 319.3 267 61.4
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 6.0e-81 305.8 446 40.6
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 6.8e-77 292.4 299 54.8
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.2e-76 291.6 314 53.5
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 6.6e-72 275.8 238 58.4
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 2.8e-62 243.8 243 54.3
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 2.8e-62 243.8 201 62.7
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 5.2e-61 239.6 210 54.8
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 9.6e-55 218.8 174 58.6
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 5.4e-50 203.0 217 50.7
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 1.3e-46 191.8 187 56.1
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 4.5e-44 183.3 117 72.6
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 4.9e-43 179.9 117 71.8
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 1.2e-36 158.7 102 74.5
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 8.4e-27 125.9 108 59.3
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 6.7e-24 116.3 117 49.6
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 5.9e-20 103.2 99 55.6
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 2.0e-07 61.6 197 27.9
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 3.3e-07 60.8 44 63.6
MD06G1154400 Malus domestica HOM05D006543 ORTHO05D008308 5.7e-07 60.1 200 27.5


User provided reference genes

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