Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 3.6e-281 971.1 551 100.0
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 3.9e-142 509.2 571 52.2
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 6.5e-137 491.9 569 49.6
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 7.1e-136 488.4 539 56.0
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.8e-134 483.8 571 51.8
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.8e-134 483.8 555 54.1
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 8.2e-132 474.9 513 53.4
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 6.9e-131 471.9 587 46.7
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 2.6e-130 469.9 611 46.3
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 1.7e-129 467.2 529 54.1
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 2.2e-129 466.8 580 50.7
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 2.2e-129 466.8 572 49.7
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 2.9e-129 466.5 318 70.8
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 1.9e-128 463.8 572 51.9
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 3.2e-128 463.0 606 48.8
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 9.3e-128 461.5 651 46.1
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 3.9e-126 456.1 590 46.3
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 5.1e-126 455.7 589 48.4
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 5.7e-125 452.2 319 68.3
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 5.7e-125 452.2 590 47.8
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 7.4e-125 451.8 558 48.9
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 4.8e-124 449.1 589 48.9
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 2.4e-123 446.8 304 70.7
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 3.1e-123 446.4 307 70.7
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 5.3e-123 445.7 610 44.4
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 5.3e-123 445.7 675 46.2
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 9.1e-123 444.9 535 52.0
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 1.2e-122 444.5 594 49.2
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 1.5e-122 444.1 581 49.4
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 2.6e-122 443.4 559 51.0
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 2.6e-122 443.4 539 48.1
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 4.5e-122 442.6 550 50.4
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 4.5e-122 442.6 645 45.9
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 7.7e-122 441.8 636 47.5
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 1.7e-121 440.7 312 67.3
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.7e-121 440.7 624 47.9
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 1.7e-121 440.7 636 47.5
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 2.2e-121 440.3 306 69.9
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.9e-121 439.9 574 48.3
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 5.0e-121 439.1 585 49.4
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 6.5e-121 438.7 307 68.7
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 3.2e-120 436.4 561 50.6
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 3.2e-120 436.4 553 49.7
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 7.2e-120 435.3 533 51.8
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 2.1e-119 433.7 494 48.4
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 2.7e-119 433.3 620 45.6
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 3.6e-119 433.0 570 48.9
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 3.6e-119 433.0 304 68.4
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 6.1e-119 432.2 619 43.6
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 1.0e-118 431.4 310 67.1
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 3.0e-118 429.9 303 68.0
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 3.0e-118 429.9 303 68.0
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 2.0e-117 427.2 598 48.8
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 2.0e-117 427.2 516 48.3
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 4.4e-117 426.0 686 39.4
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 5.7e-117 425.6 487 52.2
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 7.4e-117 425.2 537 48.2
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 7.4e-117 425.2 304 68.4
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.3e-116 424.5 303 67.3
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 2.2e-116 423.7 546 55.7
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 8.2e-116 421.8 372 58.9
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.2e-114 417.9 539 48.4
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 3.8e-113 412.9 499 48.3
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 8.5e-113 411.8 351 61.3
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 4.2e-112 409.5 353 62.0
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 5.5e-112 409.1 357 59.1
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 1.0e-110 404.8 552 45.5
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 2.3e-110 403.7 527 45.0
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 2.0e-109 400.6 598 46.7
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 3.3e-109 399.8 541 48.6
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 1.7e-108 397.5 543 44.0
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.7e-108 397.5 565 45.0
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 8.2e-108 395.2 303 63.0
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 1.1e-107 394.8 540 48.0
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.4e-107 394.4 551 46.5
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.8e-107 394.0 546 46.2
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 9.1e-107 391.7 304 62.5
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.6e-106 391.0 549 47.5
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 1.6e-106 391.0 556 45.7
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 1.6e-106 391.0 556 45.7
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 2.2e-105 387.1 556 45.3
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 2.2e-105 387.1 352 58.2
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 3.8e-105 386.3 273 67.4
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 5.0e-105 386.0 304 61.5
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 1.5e-104 384.4 657 43.1
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 2.5e-104 383.6 572 45.3
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 8.8e-102 375.2 312 57.1
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 3.3e-101 373.2 603 43.6
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 3.1e-99 366.7 638 40.0
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 2.0e-98 364.0 296 60.1
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 1.0e-97 361.7 319 54.9
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 8.5e-97 358.6 512 45.9
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 1.1e-96 358.2 630 42.4
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 7.2e-96 355.5 311 58.8
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 9.4e-96 355.1 303 56.4
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 2.3e-94 350.5 309 58.6
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 2.3e-94 350.5 309 58.6
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 3.0e-94 350.1 653 39.1
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 1.2e-93 348.2 678 37.8
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 2.2e-92 344.0 311 54.0
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 1.8e-91 340.9 298 58.1
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 2.4e-91 340.5 299 57.5
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 1.6e-90 337.8 298 58.1
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.5e-88 331.3 537 43.0
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.4e-86 324.7 597 40.7
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 3.0e-86 323.6 360 49.4
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 5.9e-82 309.3 266 60.9
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.7e-79 299.7 471 43.5
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 1.8e-78 297.7 339 44.5
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 5.8e-77 292.7 337 44.5
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 4.1e-75 286.6 336 42.6
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.9e-64 251.1 492 39.0
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 3.3e-64 250.4 423 41.1
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.9e-60 237.3 187 62.0
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 8.3e-60 235.7 186 61.8
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 4.6e-58 229.9 181 59.1
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.1e-56 225.3 277 43.7
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 2.0e-53 214.5 145 73.8
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 1.3e-49 201.8 393 34.6
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 5.6e-48 196.4 124 78.2
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.1e-38 164.1 293 35.2
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.8e-31 141.0 106 63.2
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.7e-28 131.7 185 42.7
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 1.6e-23 115.2 110 53.6
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.2e-21 109.0 334 32.0
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 3.8e-20 104.0 70 71.4
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.8e-15 87.8 62 62.9
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.6e-13 81.3 71 52.1
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 2.1e-10 71.6 52 53.8
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 2.5e-08 64.7 362 32.3
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 2.5e-08 64.7 51 60.8
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 2.5e-08 64.7 54 55.6
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 9.7e-08 62.8 46 71.7


User provided reference genes

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