Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0005370 Simmondsia chinensis HOM05D005653 ORTHO05D007013 8.4e-37 156.4 72 100.0
Sc02g0005350 Simmondsia chinensis HOM05D005653 ORTHO05D007013 1.6e-35 152.1 72 98.6
Sc04g0010280 Simmondsia chinensis HOM05D005653 ORTHO05D007013 9.0e-15 83.2 48 85.4
Gohir.D01G100300 Gossypium hirsutum HOM05D005653 ORTHO05D007013 7.7e-14 80.1 48 81.2
Gorai.002G181300 Gossypium raimondii HOM05D005653 ORTHO05D007013 7.7e-14 80.1 48 81.2
Gohir.A01G153900 Gossypium hirsutum HOM05D005653 ORTHO05D007013 2.2e-13 78.6 47 80.9
COL.COLO4_05008 Corchorus olitorius HOM05D005653 ORTHO05D007013 2.9e-13 78.2 48 79.2
Duzib268G1459 Durio zibethinus HOM05D005653 ORTHO05D007013 6.5e-13 77.0 48 79.2
Thecc.02G202100 Theobroma cacao HOM05D005653 ORTHO05D007013 6.5e-13 77.0 48 79.2
HPP92_006272 Vanilla planifolia HOM05D005653 ORTHO05D007013 6.5e-13 77.0 48 79.2
Sabra03G0123700 Salix brachista HOM05D005653 ORTHO05D007013 1.9e-12 75.5 48 77.1
Eucgr.B03521 Eucalyptus grandis HOM05D005653 ORTHO05D007013 2.5e-12 75.1 48 79.2
Os01g0100900 Oryza sativa ssp. japonica HOM05D005653 ORTHO05D007013 2.5e-12 75.1 47 78.7
Nn4g22260 Nelumbo nucifera HOM05D005653 ORTHO05D007013 4.2e-12 74.3 47 78.7
QL03p051746 Quercus lobata HOM05D005653 ORTHO05D007013 4.2e-12 74.3 48 77.1
Zm00001eb334070 Zea mays HOM05D005653 ORTHO05D007013 4.2e-12 74.3 47 76.6
CiPaw.05G107200 Carya illinoinensis HOM05D005653 ORTHO05D007013 5.5e-12 73.9 48 75.0
PSO478G2696 Papaver somniferum HOM05D005653 ORTHO05D007013 5.5e-12 73.9 48 77.1
SEGI_37890 Sequoiadendron giganteum HOM05D005653 ORTHO05D007013 5.5e-12 73.9 55 69.1
Potri.003G168800 Populus trichocarpa HOM05D005653 ORTHO05D007013 7.2e-12 73.6 48 75.0
Aqoxy5G03294 Aquilegia oxysepala HOM05D005653 ORTHO05D007013 9.4e-12 73.2 48 75.0
CSS0037525 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 9.4e-12 73.2 48 75.0
CSS0048785 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 9.4e-12 73.2 48 75.0
Aa31sc146G110 Aethionema arabicum HOM05D005653 ORTHO05D007013 1.2e-11 72.8 48 77.1
MBI11_g05337_MAGBIO Magnolia biondii HOM05D005653 ORTHO05D007013 1.2e-11 72.8 48 75.0
Hund06105 Selenicereus undatus HOM05D005653 ORTHO05D007013 1.2e-11 72.8 47 76.6
CANSAT01G0083 Cannabis sativa HOM05D005653 ORTHO05D007013 1.6e-11 72.4 48 75.0
Cfa009387 Carpinus fangiana HOM05D005653 ORTHO05D007013 1.6e-11 72.4 48 75.0
Psat3g188000 Pisum sativum HOM05D005653 ORTHO05D007013 1.6e-11 72.4 55 67.3
TWI18G0855 Tripterygium wilfordii HOM05D005653 ORTHO05D007013 1.6e-11 72.4 48 75.0
GSVIVG01010526001 Vitis vinifera HOM05D005653 ORTHO05D007013 1.6e-11 72.4 47 74.5
Sabra01G0042500 Salix brachista HOM05D005653 ORTHO05D007013 2.1e-11 72.0 48 72.9
TAR374G1158 Trochodendron aralioides HOM05D005653 ORTHO05D007013 2.1e-11 72.0 55 65.5
Medtr7g022310 Medicago truncatula HOM05D005653 ORTHO05D007013 2.7e-11 71.6 55 67.3
PSO017G4941 Papaver somniferum HOM05D005653 ORTHO05D007013 2.7e-11 71.6 48 75.0
Sed0008245 Sechium edule HOM05D005653 ORTHO05D007013 2.7e-11 71.6 48 72.9
PGSC0003DMG400019810 Solanum tuberosum HOM05D005653 ORTHO05D007013 2.7e-11 71.6 55 69.1
CDE05G3552 Ceratophyllum demersum HOM05D005653 ORTHO05D007013 3.6e-11 71.2 47 74.5
AUR62005648 Chenopodium quinoa HOM05D005653 ORTHO05D007013 3.6e-11 71.2 55 67.3
AUR62028902 Chenopodium quinoa HOM05D005653 ORTHO05D007013 3.6e-11 71.2 55 67.3
Manes.12G008600 Manihot esculenta HOM05D005653 ORTHO05D007013 3.6e-11 71.2 48 72.9
Carub.0001s2643 Capsella rubella HOM05D005653 ORTHO05D007013 4.6e-11 70.9 48 75.0
MELO3C022321.2 Cucumis melo HOM05D005653 ORTHO05D007013 4.6e-11 70.9 48 72.9
Thhalv10009378m.g Eutrema salsugineum HOM05D005653 ORTHO05D007013 4.6e-11 70.9 48 75.0
MD13G1122300 Malus domestica HOM05D005653 ORTHO05D007013 4.6e-11 70.9 48 72.9
Peaxi162Scf00128g01533 Petunia axillaris HOM05D005653 ORTHO05D007013 4.6e-11 70.9 48 75.0
CAN.G789.4 Capsicum annuum HOM05D005653 ORTHO05D007013 6.1e-11 70.5 48 75.0
Ca_07130_v3 Cicer arietinum L. HOM05D005653 ORTHO05D007013 6.1e-11 70.5 48 72.9
FvH4_4g23470 Fragaria vesca HOM05D005653 ORTHO05D007013 6.1e-11 70.5 48 72.9
FAN07G0042 Fragaria x ananassa HOM05D005653 ORTHO05D007013 6.1e-11 70.5 48 72.9
FAN12G1333 Fragaria x ananassa HOM05D005653 ORTHO05D007013 6.1e-11 70.5 48 72.9
Glyma.18G284300 Glycine max HOM05D005653 ORTHO05D007013 6.1e-11 70.5 48 72.9
Nitab4.5_0000340g0070 Nicotiana tabacum HOM05D005653 ORTHO05D007013 6.1e-11 70.5 48 75.0
Dinv17587 Davidia involucrata HOM05D005653 ORTHO05D007013 7.9e-11 70.1 48 72.9
Lalb_Chr10g0092041 Lupinus albus HOM05D005653 ORTHO05D007013 7.9e-11 70.1 48 70.8
Rhsim12G0094700 Rhododendron simsii HOM05D005653 ORTHO05D007013 7.9e-11 70.1 48 72.9
vmacro16096 Vaccinium macrocarpon HOM05D005653 ORTHO05D007013 7.9e-11 70.1 55 65.5
Atru.BG.292.p Acer truncatum HOM05D005653 ORTHO05D007013 1.0e-10 69.7 48 72.9
Atru.chr11.2357 Acer truncatum HOM05D005653 ORTHO05D007013 1.0e-10 69.7 48 72.9
ATR0561G119 Amborella trichopoda HOM05D005653 ORTHO05D007013 1.0e-10 69.7 47 72.3
AL1G41470 Arabidopsis lyrata HOM05D005653 ORTHO05D007013 1.0e-10 69.7 48 72.9
arahy.Tifrunner.gnm1.ann1.8E8WMD Arachis hypogaea HOM05D005653 ORTHO05D007013 1.0e-10 69.7 48 70.8
arahy.Tifrunner.gnm1.ann1.K5AHSV Arachis hypogaea HOM05D005653 ORTHO05D007013 1.0e-10 69.7 48 70.8
ClCG06G002070 Citrullus lanatus HOM05D005653 ORTHO05D007013 1.0e-10 69.7 48 70.8
Prupe.1G222900 Prunus persica HOM05D005653 ORTHO05D007013 1.0e-10 69.7 48 72.9
Sp1g24170 Schrenkiella parvula HOM05D005653 ORTHO05D007013 1.0e-10 69.7 48 72.9
Solyc05g015860.4 Solanum lycopersicum HOM05D005653 ORTHO05D007013 1.0e-10 69.7 55 67.3
Sopen05g011500 Solanum pennellii HOM05D005653 ORTHO05D007013 1.0e-10 69.7 55 67.3
EL10Ac6g13536 Beta vulgaris HOM05D005653 ORTHO05D007013 1.4e-10 69.3 48 70.8
Haze_12446 Corylus avellana HOM05D005653 ORTHO05D007013 1.4e-10 69.3 48 70.8
Lj1g0002640 Lotus japonicus HOM05D005653 ORTHO05D007013 1.4e-10 69.3 48 70.8
ECA233G0831 Erigeron canadensis HOM05D005653 ORTHO05D007013 1.8e-10 68.9 55 67.3
RcHm_v2.0_Chr4g0429841 Rosa chinensis HOM05D005653 ORTHO05D007013 1.8e-10 68.9 48 70.8
Ah.03g135980 Amaranthus hybridus HOM05D005653 ORTHO05D007013 3.0e-10 68.2 48 70.8
C03p74690 Brassica napus HOM05D005653 ORTHO05D007013 3.0e-10 68.2 48 70.8
Lj3A1072T24 Lonicera japonica HOM05D005653 ORTHO05D007013 3.0e-10 68.2 48 70.8
Actinidia39799 Actinidia chinensis HOM05D005653 ORTHO05D007013 3.9e-10 67.8 48 70.8
Ciclev10031168m.g Citrus clementina HOM05D005653 ORTHO05D007013 3.9e-10 67.8 48 70.8
CsaV3_6G008140 Cucumis sativus L. HOM05D005653 ORTHO05D007013 3.9e-10 67.8 48 68.8
DCAR_024662 Daucus carota HOM05D005653 ORTHO05D007013 3.9e-10 67.8 48 70.8
PGR102G3026 Punica granatum HOM05D005653 ORTHO05D007013 3.9e-10 67.8 48 70.8
THA.LOC104820527 Tarenaya hassleriana HOM05D005653 ORTHO05D007013 3.9e-10 67.8 48 70.8
AT1G27980 Arabidopsis thaliana HOM05D005653 ORTHO05D007013 5.1e-10 67.4 48 70.8
Glyma.02G097200 Glycine max HOM05D005653 ORTHO05D007013 5.1e-10 67.4 48 68.8
HanXRQChr08g0209781 Helianthus annuus HOM05D005653 ORTHO05D007013 5.1e-10 67.4 55 65.5
Lsat_1_v5_gn_8_147520 Lactuca sativa HOM05D005653 ORTHO05D007013 5.1e-10 67.4 55 65.5
A08p25960 Brassica napus HOM05D005653 ORTHO05D007013 6.7e-10 67.0 48 70.8
BolC3t19717H Brassica oleracea HOM05D005653 ORTHO05D007013 6.7e-10 67.0 48 70.8
BraA08t34547Z Brassica rapa HOM05D005653 ORTHO05D007013 6.7e-10 67.0 48 70.8
Pp3c25_6390 Physcomitrium patens HOM05D005653 ORTHO05D007013 6.7e-10 67.0 48 68.8
CARHR027410 Cardamine hirsuta HOM05D005653 ORTHO05D007013 8.8e-10 66.6 48 70.8
Cc11_g17180 Coffea canephora HOM05D005653 ORTHO05D007013 8.8e-10 66.6 48 68.8
TPR.G2913 Trifolium pratense HOM05D005653 ORTHO05D007013 8.8e-10 66.6 48 68.8
SHI17985 Sapria himalayana HOM05D005653 ORTHO05D007013 2.0e-09 65.5 48 68.8
VMungo1383G3612 Vigna mungo HOM05D005653 ORTHO05D007013 2.0e-09 65.5 48 68.8
SGA_v2.0_scaffold46G17389 Striga asiatica HOM05D005653 ORTHO05D007013 2.5e-09 65.1 48 68.8
BcaC05g26610 Brassica carinata HOM05D005653 ORTHO05D007013 3.3e-09 64.7 48 68.8
C05p26600 Brassica napus HOM05D005653 ORTHO05D007013 3.3e-09 64.7 48 68.8
SalBow2G0115 Salvia bowleyana HOM05D005653 ORTHO05D007013 3.3e-09 64.7 48 66.7
Phvul.008G017200 Phaseolus vulgaris HOM05D005653 ORTHO05D007013 4.3e-09 64.3 48 66.7
Actinidia34022 Actinidia chinensis HOM05D005653 ORTHO05D007013 1.7e-08 62.4 45 68.9
Migut.K01002 Erythranthe guttata HOM05D005653 ORTHO05D007013 3.7e-08 61.2 48 66.7
Mapoly0064s0066 Marchantia polymorpha HOM05D005653 ORTHO05D007013 1.1e-07 59.7 48 56.2
SMO117G0322 Selaginella moellendorffii HOM05D005653 ORTHO05D007013 1.5e-06 55.8 48 58.3


User provided reference genes

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