Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0005360 Simmondsia chinensis HOM05D005653 ORTHO05D007013 4.9e-51 204.1 100 100.0
Sc02g0005380 Simmondsia chinensis HOM05D005653 ORTHO05D007013 1.6e-49 199.1 100 98.0
Sc04g0010280 Simmondsia chinensis HOM05D005653 ORTHO05D007013 9.2e-42 173.3 99 84.8
EL10Ac6g13536 Beta vulgaris HOM05D005653 ORTHO05D007013 8.6e-40 166.8 99 79.8
AUR62005648 Chenopodium quinoa HOM05D005653 ORTHO05D007013 1.5e-39 166.0 99 79.8
Lsat_1_v5_gn_8_147520 Lactuca sativa HOM05D005653 ORTHO05D007013 7.3e-39 163.7 99 79.8
FAN07G0042 Fragaria x ananassa HOM05D005653 ORTHO05D007013 9.5e-39 163.3 96 78.1
RcHm_v2.0_Chr4g0429841 Rosa chinensis HOM05D005653 ORTHO05D007013 1.2e-38 162.9 96 77.1
AUR62028902 Chenopodium quinoa HOM05D005653 ORTHO05D007013 1.6e-38 162.5 99 77.8
FvH4_4g23470 Fragaria vesca HOM05D005653 ORTHO05D007013 2.1e-38 162.2 96 77.1
FAN12G1333 Fragaria x ananassa HOM05D005653 ORTHO05D007013 2.1e-38 162.2 96 77.1
PGR102G3026 Punica granatum HOM05D005653 ORTHO05D007013 2.1e-38 162.2 96 78.1
ECA233G0831 Erigeron canadensis HOM05D005653 ORTHO05D007013 6.2e-38 160.6 96 79.2
arahy.Tifrunner.gnm1.ann1.8E8WMD Arachis hypogaea HOM05D005653 ORTHO05D007013 8.1e-38 160.2 96 77.1
arahy.Tifrunner.gnm1.ann1.K5AHSV Arachis hypogaea HOM05D005653 ORTHO05D007013 8.1e-38 160.2 96 77.1
Dinv17587 Davidia involucrata HOM05D005653 ORTHO05D007013 8.1e-38 160.2 99 77.8
CSS0037525 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 1.1e-37 159.8 96 78.1
CSS0048785 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 1.1e-37 159.8 96 78.1
Lj1g0002640 Lotus japonicus HOM05D005653 ORTHO05D007013 1.1e-37 159.8 96 77.1
THA.LOC104820527 Tarenaya hassleriana HOM05D005653 ORTHO05D007013 1.1e-37 159.8 96 77.1
Peaxi162Scf00128g01533 Petunia axillaris HOM05D005653 ORTHO05D007013 1.8e-37 159.1 96 76.0
QL03p051746 Quercus lobata HOM05D005653 ORTHO05D007013 1.8e-37 159.1 96 77.1
Migut.K01002 Erythranthe guttata HOM05D005653 ORTHO05D007013 2.4e-37 158.7 96 77.1
Medtr7g022310 Medicago truncatula HOM05D005653 ORTHO05D007013 2.4e-37 158.7 96 78.1
Psat3g188000 Pisum sativum HOM05D005653 ORTHO05D007013 2.4e-37 158.7 96 79.2
Eucgr.B03521 Eucalyptus grandis HOM05D005653 ORTHO05D007013 3.1e-37 158.3 99 75.8
Atru.BG.292.p Acer truncatum HOM05D005653 ORTHO05D007013 4.0e-37 157.9 96 76.0
Atru.chr11.2357 Acer truncatum HOM05D005653 ORTHO05D007013 4.0e-37 157.9 96 76.0
COL.COLO4_05008 Corchorus olitorius HOM05D005653 ORTHO05D007013 4.0e-37 157.9 95 77.9
Lj3A1072T24 Lonicera japonica HOM05D005653 ORTHO05D007013 4.0e-37 157.9 96 76.0
vmacro16096 Vaccinium macrocarpon HOM05D005653 ORTHO05D007013 4.0e-37 157.9 96 77.1
Sabra01G0042500 Salix brachista HOM05D005653 ORTHO05D007013 5.2e-37 157.5 96 74.0
Thecc.02G202100 Theobroma cacao HOM05D005653 ORTHO05D007013 5.2e-37 157.5 96 76.0
TPR.G2913 Trifolium pratense HOM05D005653 ORTHO05D007013 5.2e-37 157.5 97 76.3
Glyma.02G097200 Glycine max HOM05D005653 ORTHO05D007013 6.8e-37 157.1 96 77.1
SalBow2G0115 Salvia bowleyana HOM05D005653 ORTHO05D007013 6.8e-37 157.1 96 78.1
Ciclev10031168m.g Citrus clementina HOM05D005653 ORTHO05D007013 8.9e-37 156.8 96 76.0
PGSC0003DMG400019810 Solanum tuberosum HOM05D005653 ORTHO05D007013 8.9e-37 156.8 96 76.0
Prupe.1G222900 Prunus persica HOM05D005653 ORTHO05D007013 1.2e-36 156.4 96 74.0
Actinidia39799 Actinidia chinensis HOM05D005653 ORTHO05D007013 1.5e-36 156.0 96 75.0
MELO3C022321.2 Cucumis melo HOM05D005653 ORTHO05D007013 1.5e-36 156.0 99 75.8
PSO478G2696 Papaver somniferum HOM05D005653 ORTHO05D007013 1.5e-36 156.0 96 78.1
VMungo1383G3612 Vigna mungo HOM05D005653 ORTHO05D007013 2.0e-36 155.6 96 76.0
CAN.G789.4 Capsicum annuum HOM05D005653 ORTHO05D007013 2.6e-36 155.2 96 75.0
Solyc05g015860.4 Solanum lycopersicum HOM05D005653 ORTHO05D007013 2.6e-36 155.2 96 75.0
GSVIVG01010526001 Vitis vinifera HOM05D005653 ORTHO05D007013 2.6e-36 155.2 96 76.0
Cc11_g17180 Coffea canephora HOM05D005653 ORTHO05D007013 4.4e-36 154.5 96 75.0
Cfa009387 Carpinus fangiana HOM05D005653 ORTHO05D007013 5.8e-36 154.1 95 75.8
Haze_12446 Corylus avellana HOM05D005653 ORTHO05D007013 5.8e-36 154.1 95 75.8
Glyma.18G284300 Glycine max HOM05D005653 ORTHO05D007013 5.8e-36 154.1 96 76.0
HanXRQChr08g0209781 Helianthus annuus HOM05D005653 ORTHO05D007013 7.6e-36 153.7 94 75.5
PSO017G4941 Papaver somniferum HOM05D005653 ORTHO05D007013 7.6e-36 153.7 96 77.1
Rhsim12G0094700 Rhododendron simsii HOM05D005653 ORTHO05D007013 7.6e-36 153.7 96 71.9
Ca_07130_v3 Cicer arietinum L. HOM05D005653 ORTHO05D007013 1.3e-35 152.9 96 75.0
Aa31sc146G110 Aethionema arabicum HOM05D005653 ORTHO05D007013 2.2e-35 152.1 95 73.7
Lalb_Chr10g0092041 Lupinus albus HOM05D005653 ORTHO05D007013 2.2e-35 152.1 96 75.0
MD13G1122300 Malus domestica HOM05D005653 ORTHO05D007013 2.2e-35 152.1 96 71.9
Manes.12G008600 Manihot esculenta HOM05D005653 ORTHO05D007013 2.2e-35 152.1 96 71.9
Sed0008245 Sechium edule HOM05D005653 ORTHO05D007013 2.2e-35 152.1 99 74.7
AT1G27980 Arabidopsis thaliana HOM05D005653 ORTHO05D007013 3.8e-35 151.4 95 73.7
Gohir.A01G153900 Gossypium hirsutum HOM05D005653 ORTHO05D007013 3.8e-35 151.4 94 75.5
Sp1g24170 Schrenkiella parvula HOM05D005653 ORTHO05D007013 3.8e-35 151.4 95 73.7
TAR374G1158 Trochodendron aralioides HOM05D005653 ORTHO05D007013 3.8e-35 151.4 94 75.5
TWI18G0855 Tripterygium wilfordii HOM05D005653 ORTHO05D007013 4.9e-35 151.0 96 71.9
unitig_26.g10407 Utricularia gibba HOM05D005653 ORTHO05D007013 6.4e-35 150.6 94 74.5
Thhalv10009378m.g Eutrema salsugineum HOM05D005653 ORTHO05D007013 8.4e-35 150.2 95 71.6
Nn4g22260 Nelumbo nucifera HOM05D005653 ORTHO05D007013 1.1e-34 149.8 96 75.0
Carub.0001s2643 Capsella rubella HOM05D005653 ORTHO05D007013 1.4e-34 149.4 95 71.6
CARHR027410 Cardamine hirsuta HOM05D005653 ORTHO05D007013 1.4e-34 149.4 95 71.6
ClCG06G002070 Citrullus lanatus HOM05D005653 ORTHO05D007013 3.2e-34 148.3 99 72.7
Gohir.D01G100300 Gossypium hirsutum HOM05D005653 ORTHO05D007013 4.2e-34 147.9 94 74.5
Gorai.002G181300 Gossypium raimondii HOM05D005653 ORTHO05D007013 4.2e-34 147.9 94 74.5
MBI11_g05337_MAGBIO Magnolia biondii HOM05D005653 ORTHO05D007013 4.2e-34 147.9 99 69.7
Potri.003G168800 Populus trichocarpa HOM05D005653 ORTHO05D007013 4.2e-34 147.9 96 69.8
Aqoxy5G03294 Aquilegia oxysepala HOM05D005653 ORTHO05D007013 5.4e-34 147.5 96 70.8
AL1G41470 Arabidopsis lyrata HOM05D005653 ORTHO05D007013 7.1e-34 147.1 95 70.5
C03p74690 Brassica napus HOM05D005653 ORTHO05D007013 7.1e-34 147.1 95 70.5
A08p25960 Brassica napus HOM05D005653 ORTHO05D007013 1.2e-33 146.4 95 70.5
BolC3t19717H Brassica oleracea HOM05D005653 ORTHO05D007013 1.2e-33 146.4 95 70.5
BraA08t34547Z Brassica rapa HOM05D005653 ORTHO05D007013 1.2e-33 146.4 95 70.5
DCAR_024662 Daucus carota HOM05D005653 ORTHO05D007013 2.1e-33 145.6 96 69.8
Sabra03G0123700 Salix brachista HOM05D005653 ORTHO05D007013 6.0e-33 144.1 101 68.3
SGA_v2.0_scaffold46G17389 Striga asiatica HOM05D005653 ORTHO05D007013 6.0e-33 144.1 97 69.1
SEGI_37890 Sequoiadendron giganteum HOM05D005653 ORTHO05D007013 1.1e-31 139.8 95 66.3
ATR0561G119 Amborella trichopoda HOM05D005653 ORTHO05D007013 1.9e-31 139.0 95 66.3
Zm00001eb334070 Zea mays HOM05D005653 ORTHO05D007013 4.3e-31 137.9 94 70.2
Os01g0100900 Oryza sativa ssp. japonica HOM05D005653 ORTHO05D007013 9.6e-31 136.7 94 69.1
CDE05G3552 Ceratophyllum demersum HOM05D005653 ORTHO05D007013 1.6e-30 136.0 95 62.1
HPP92_006272 Vanilla planifolia HOM05D005653 ORTHO05D007013 1.6e-30 136.0 96 66.7
SHI17985 Sapria himalayana HOM05D005653 ORTHO05D007013 8.1e-30 133.7 104 62.5
Mapoly0064s0066 Marchantia polymorpha HOM05D005653 ORTHO05D007013 1.8e-29 132.5 95 63.2
SMO117G0322 Selaginella moellendorffii HOM05D005653 ORTHO05D007013 2.6e-28 128.6 97 59.8
CsaV3_6G008140 Cucumis sativus L. HOM05D005653 ORTHO05D007013 9.9e-28 126.7 79 77.2
Phvul.008G017200 Phaseolus vulgaris HOM05D005653 ORTHO05D007013 1.7e-27 125.9 79 77.2
CiPaw.05G107200 Carya illinoinensis HOM05D005653 ORTHO05D007013 2.2e-27 125.6 79 75.9
Pp3c25_6390 Physcomitrium patens HOM05D005653 ORTHO05D007013 6.4e-27 124.0 96 58.3
Hund06105 Selenicereus undatus HOM05D005653 ORTHO05D007013 9.6e-23 110.2 148 45.3
Ah.03g135980 Amaranthus hybridus HOM05D005653 ORTHO05D007013 3.1e-21 105.1 99 59.6
Duzib268G1459 Durio zibethinus HOM05D005653 ORTHO05D007013 3.1e-21 105.1 96 57.3
Nitab4.5_0000340g0070 Nicotiana tabacum HOM05D005653 ORTHO05D007013 6.9e-21 104.0 95 57.9
Actinidia34022 Actinidia chinensis HOM05D005653 ORTHO05D007013 1.1e-18 96.7 56 71.4
Hma1.2p1_0862F.1_g229925 Hydrangea macrophylla HOM05D005653 ORTHO05D007013 1.9e-18 95.9 79 62.0
CBR_g49954 Chara braunii HOM05D005653 ORTHO05D007013 5.4e-18 94.4 95 48.4
CANSAT01G0083 Cannabis sativa HOM05D005653 ORTHO05D007013 1.0e-16 90.1 59 72.9
PRCOL_00004852 Prasinoderma coloniale HOM05D005653 ORTHO05D007013 1.4e-13 79.7 94 44.7
Cpa.g.c35206 Carica papaya HOM05D005653 ORTHO05D007013 1.4e-10 69.7 36 72.2
Cre03.g155051 Chlamydomonas reinhardtii HOM05D005653 ORTHO05D007013 4.6e-09 64.7 86 41.9
MCO01G158 Micromonas commoda HOM05D005653 ORTHO05D007013 1.8e-08 62.8 81 43.2
Sopen05g011500 Solanum pennellii HOM05D005653 ORTHO05D007013 9.6e-07 57.0 35 77.1


User provided reference genes

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