Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 4.2e-127 458.0 223 100.0
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 1.2e-86 323.6 216 75.0
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 8.8e-85 317.4 214 75.2
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 1.5e-84 316.6 189 80.4
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.6e-84 315.8 223 71.7
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 4.4e-84 315.1 218 72.5
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.7e-83 313.2 171 84.8
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 1.7e-83 313.2 218 72.9
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 8.3e-83 310.8 171 84.8
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.4e-82 310.1 225 71.1
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 1.4e-82 310.1 218 72.5
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 2.4e-82 309.3 226 69.0
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.4e-82 309.3 218 72.0
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 3.1e-82 308.9 190 80.5
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 5.4e-82 308.1 179 81.0
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 7.0e-82 307.8 214 73.8
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 7.0e-82 307.8 171 84.2
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 9.1e-82 307.4 187 76.5
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 9.1e-82 307.4 187 76.5
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 9.1e-82 307.4 167 85.6
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 1.6e-81 306.6 213 71.4
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 2.7e-81 305.8 214 72.9
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 2.7e-81 305.8 218 71.6
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 4.5e-81 305.1 192 77.6
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.5e-81 305.1 210 71.9
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 4.5e-81 305.1 225 70.7
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 4.5e-81 305.1 220 70.5
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 4.5e-81 305.1 186 78.5
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 5.9e-81 304.7 157 90.4
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 7.7e-81 304.3 171 84.2
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 7.7e-81 304.3 217 71.4
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.0e-80 303.9 187 76.5
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.0e-80 303.9 198 72.7
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.0e-80 303.9 221 71.5
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.3e-80 303.5 184 79.3
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.3e-80 303.5 212 74.1
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.3e-80 303.5 220 70.9
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.7e-80 303.1 167 85.0
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 2.2e-80 302.8 170 82.4
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 2.9e-80 302.4 157 90.4
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 2.9e-80 302.4 235 67.7
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.8e-80 302.0 226 69.9
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 3.8e-80 302.0 226 69.9
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 6.5e-80 301.2 224 68.3
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 6.5e-80 301.2 228 67.5
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 1.5e-79 300.1 189 75.7
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 1.5e-79 300.1 175 81.1
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.5e-79 300.1 218 70.2
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.5e-79 300.1 174 81.0
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.5e-79 300.1 171 82.5
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.5e-79 300.1 171 83.0
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.5e-79 300.1 202 73.3
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.9e-79 299.7 172 80.2
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.9e-79 299.7 231 68.4
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 2.5e-79 299.3 166 84.9
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 3.2e-79 298.9 156 89.1
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 3.2e-79 298.9 218 71.6
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 4.2e-79 298.5 179 79.9
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 4.2e-79 298.5 221 66.1
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 7.2e-79 297.7 197 72.1
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 9.4e-79 297.4 185 77.8
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.2e-78 297.0 152 90.1
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 1.2e-78 297.0 158 87.3
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.2e-78 297.0 189 76.7
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 1.6e-78 296.6 207 70.5
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 3.6e-78 295.4 175 80.6
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 6.1e-78 294.7 162 85.8
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 6.1e-78 294.7 175 80.6
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 8.0e-78 294.3 167 82.0
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 8.0e-78 294.3 222 67.6
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 1.0e-77 293.9 218 68.3
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 1.0e-77 293.9 171 78.9
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.0e-77 293.9 164 85.4
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.0e-77 293.9 171 80.7
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.0e-77 293.9 170 80.6
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 1.4e-77 293.5 205 71.2
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.4e-77 293.5 183 74.3
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.0e-77 292.4 207 68.6
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 4.0e-77 292.0 186 74.2
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 6.8e-77 291.2 176 80.1
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 6.8e-77 291.2 224 68.3
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.2e-76 290.4 178 77.5
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.2e-76 290.4 176 80.1
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 1.5e-76 290.0 170 79.4
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 1.5e-76 290.0 171 81.3
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.5e-76 290.0 150 89.3
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 2.0e-76 289.7 214 68.7
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 2.0e-76 289.7 152 86.8
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 2.6e-76 289.3 220 69.5
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 4.4e-76 288.5 267 60.7
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 4.4e-76 288.5 216 68.5
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 5.7e-76 288.1 164 81.1
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 5.7e-76 288.1 176 79.5
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 5.7e-76 288.1 152 87.5
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 5.7e-76 288.1 177 76.3
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 1.7e-75 286.6 233 63.9
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 2.8e-75 285.8 180 77.8
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 2.8e-75 285.8 180 77.8
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 3.7e-75 285.4 198 73.7
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 4.9e-75 285.0 226 67.3
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 8.3e-75 284.3 180 77.2
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 8.3e-75 284.3 231 66.2
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.1e-74 283.9 227 65.6
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 2.0e-73 279.6 196 68.9
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 4.5e-73 278.5 142 90.1
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 4.5e-73 278.5 170 76.5
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 8.6e-72 274.2 170 74.7
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 2.5e-71 272.7 219 64.8
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 9.5e-71 270.8 148 84.5
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 2.8e-70 269.2 144 86.1
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 2.8e-70 269.2 219 61.6
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 3.6e-70 268.9 164 76.8
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.2e-67 259.6 206 67.0
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 2.7e-65 252.7 215 63.7
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 8.6e-64 247.7 158 70.9
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 4.3e-63 245.4 148 73.6
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 8.0e-62 241.1 211 60.2
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 4.4e-60 235.3 174 65.5
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 4.1e-58 228.8 225 54.2
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 5.4e-58 228.4 196 60.7
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 2.0e-52 209.9 110 90.9
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 7.1e-50 201.4 137 72.3
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.3e-48 196.4 157 65.0
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 7.3e-47 191.4 141 66.7
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 1.1e-45 187.6 154 63.0
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 2.3e-40 169.9 111 71.2
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 3.9e-40 169.1 101 76.2
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 2.4e-37 159.8 100 77.0
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 3.8e-35 152.5 92 78.3
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 3.8e-35 152.5 92 78.3
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.1e-32 142.1 106 67.0
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 6.9e-29 131.7 145 39.3
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.9e-27 125.6 70 85.7
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 1.1e-26 124.4 114 58.8
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 2.4e-26 123.2 66 89.4
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 8.7e-24 114.8 63 87.3
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 9.9e-20 101.3 59 81.4
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 7.1e-18 95.1 76 55.3
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.1e-15 87.8 49 83.7
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 9.6e-15 84.7 66 65.2
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 2.5e-10 70.1 113 42.5
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 4.2e-10 69.3 80 48.8
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 1.6e-09 67.4 42 71.4
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 1.3e-08 64.3 47 61.7
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.5e-07 60.8 28 85.7
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.5e-07 60.8 28 85.7


User provided reference genes

Program Settings