Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0006340 Simmondsia chinensis HOM05D001594 ORTHO05D002862 5.8e-77 290.8 146 100.0
MD04G1155600 Malus domestica HOM05D001594 ORTHO05D002862 4.2e-35 151.8 154 51.9
MD12G1168800 Malus domestica HOM05D001594 ORTHO05D002862 5.1e-33 144.8 154 51.3
Hund10997 Selenicereus undatus HOM05D001594 ORTHO05D002862 8.8e-33 144.1 147 52.4
GSVIVG01011173001 Vitis vinifera HOM05D001594 ORTHO05D002862 1.9e-32 142.9 154 51.9
Prupe.6G279100 Prunus persica HOM05D001594 ORTHO05D002862 7.4e-32 141.0 150 50.7
TAR623G1719 Trochodendron aralioides HOM05D001594 ORTHO05D002862 1.7e-31 139.8 154 48.7
Lj3C951G4 Lonicera japonica HOM05D001594 ORTHO05D002862 2.8e-31 139.0 154 49.4
QL07p035246 Quercus lobata HOM05D001594 ORTHO05D002862 4.8e-31 138.3 150 52.0
Ciclev10010948m.g Citrus clementina HOM05D001594 ORTHO05D002862 8.2e-31 137.5 151 49.7
Lalb_Chr03g0043221 Lupinus albus HOM05D001594 ORTHO05D002862 1.1e-30 137.1 154 47.4
Thecc.05G014100 Theobroma cacao HOM05D001594 ORTHO05D002862 1.4e-30 136.7 154 48.7
TAR369G0238 Trochodendron aralioides HOM05D001594 ORTHO05D002862 1.8e-30 136.3 150 49.3
Haze_21018 Corylus avellana HOM05D001594 ORTHO05D002862 4.1e-30 135.2 150 51.3
Duzib093G0392 Durio zibethinus HOM05D001594 ORTHO05D002862 5.3e-30 134.8 154 48.1
FvH4_6g11290 Fragaria vesca HOM05D001594 ORTHO05D002862 5.3e-30 134.8 150 48.7
Phvul.008G098000 Phaseolus vulgaris HOM05D001594 ORTHO05D002862 9.1e-30 134.0 153 47.1
AUR62030493 Chenopodium quinoa HOM05D001594 ORTHO05D002862 1.5e-29 133.3 149 49.7
RcHm_v2.0_Chr3g0462831 Rosa chinensis HOM05D001594 ORTHO05D002862 2.0e-29 132.9 150 49.3
CiPaw.09G210600 Carya illinoinensis HOM05D001594 ORTHO05D002862 5.9e-29 131.3 149 51.7
Ah.12g058730 Amaranthus hybridus HOM05D001594 ORTHO05D002862 7.7e-29 131.0 151 50.3
Cfa017193 Carpinus fangiana HOM05D001594 ORTHO05D002862 7.7e-29 131.0 150 50.7
AUR62030802 Chenopodium quinoa HOM05D001594 ORTHO05D002862 1.0e-28 130.6 149 49.7
TWI74G0921 Tripterygium wilfordii HOM05D001594 ORTHO05D002862 1.3e-28 130.2 150 48.0
EL10Ac5g12548 Beta vulgaris HOM05D001594 ORTHO05D002862 1.7e-28 129.8 151 49.7
Dinv05667 Davidia involucrata HOM05D001594 ORTHO05D002862 1.7e-28 129.8 154 47.4
Psat0s2506g0120 Pisum sativum HOM05D001594 ORTHO05D002862 1.7e-28 129.8 150 46.7
Psat3g127240 Pisum sativum HOM05D001594 ORTHO05D002862 1.7e-28 129.8 154 45.5
VMungo1383G3732 Vigna mungo HOM05D001594 ORTHO05D002862 2.2e-28 129.4 153 45.8
Gohir.A04G092000 Gossypium hirsutum HOM05D001594 ORTHO05D002862 5.0e-28 128.3 150 48.0
Cpa.g.sc11.111 Carica papaya HOM05D001594 ORTHO05D002862 6.5e-28 127.9 146 49.3
FAN02G3794 Fragaria x ananassa HOM05D001594 ORTHO05D002862 6.5e-28 127.9 152 47.4
Glyma.07G151400 Glycine max HOM05D001594 ORTHO05D002862 6.5e-28 127.9 147 46.9
Atru.chr8.2259 Acer truncatum HOM05D001594 ORTHO05D002862 8.5e-28 127.5 144 49.3
FAN09G2159 Fragaria x ananassa HOM05D001594 ORTHO05D002862 8.5e-28 127.5 160 46.2
Ca_26556_v3 Cicer arietinum L. HOM05D001594 ORTHO05D002862 1.1e-27 127.1 150 47.3
COL.COLO4_14516 Corchorus olitorius HOM05D001594 ORTHO05D002862 1.1e-27 127.1 152 45.4
Dinv21741 Davidia involucrata HOM05D001594 ORTHO05D002862 1.1e-27 127.1 155 43.9
FAN14G0933 Fragaria x ananassa HOM05D001594 ORTHO05D002862 1.4e-27 126.7 160 45.6
FAN14G4686 Fragaria x ananassa HOM05D001594 ORTHO05D002862 1.4e-27 126.7 152 46.7
Potri.016G117800 Populus trichocarpa HOM05D001594 ORTHO05D002862 1.9e-27 126.3 154 46.1
FAN05G3721 Fragaria x ananassa HOM05D001594 ORTHO05D002862 2.5e-27 125.9 160 45.6
Gorai.012G115100 Gossypium raimondii HOM05D001594 ORTHO05D002862 2.5e-27 125.9 150 46.7
Lj8C66G2 Lonicera japonica HOM05D001594 ORTHO05D002862 2.5e-27 125.9 153 43.1
arahy.Tifrunner.gnm1.ann1.XZA3Z3 Arachis hypogaea HOM05D001594 ORTHO05D002862 3.2e-27 125.6 150 43.3
CSS0007956 Camellia sinensis var. sinensis HOM05D001594 ORTHO05D002862 3.2e-27 125.6 151 43.0
CSS0047942 Camellia sinensis var. sinensis HOM05D001594 ORTHO05D002862 3.2e-27 125.6 151 43.0
Sabra16G0114000 Salix brachista HOM05D001594 ORTHO05D002862 3.2e-27 125.6 154 46.1
Lj1g0012009 Lotus japonicus HOM05D001594 ORTHO05D002862 4.2e-27 125.2 154 44.2
Medtr7g068810 Medicago truncatula HOM05D001594 ORTHO05D002862 4.2e-27 125.2 150 44.0
Actinidia29705 Actinidia chinensis HOM05D001594 ORTHO05D002862 5.5e-27 124.8 149 45.0
Actinidia11574 Actinidia chinensis HOM05D001594 ORTHO05D002862 7.2e-27 124.4 154 46.8
CANSAT35G1569 Cannabis sativa HOM05D001594 ORTHO05D002862 9.4e-27 124.0 153 43.1
Hma1.2p1_0479F.1_g161395 Hydrangea macrophylla HOM05D001594 ORTHO05D002862 9.4e-27 124.0 154 43.5
Aqoxy4G02529 Aquilegia oxysepala HOM05D001594 ORTHO05D002862 1.2e-26 123.6 154 46.1
ClCG10G022220 Citrullus lanatus HOM05D001594 ORTHO05D002862 1.2e-26 123.6 151 43.7
Gohir.D04G131200 Gossypium hirsutum HOM05D001594 ORTHO05D002862 1.2e-26 123.6 150 46.0
Manes.08G093100 Manihot esculenta HOM05D001594 ORTHO05D002862 2.7e-26 122.5 154 45.5
PSO339G3156 Papaver somniferum HOM05D001594 ORTHO05D002862 7.9e-26 120.9 153 44.4
TPR.G8412 Trifolium pratense HOM05D001594 ORTHO05D002862 7.9e-26 120.9 154 43.5
Psat0s3647g0040 Pisum sativum HOM05D001594 ORTHO05D002862 1.4e-25 120.2 154 43.5
PSO801G0181 Papaver somniferum HOM05D001594 ORTHO05D002862 1.8e-25 119.8 153 44.4
CiPaw.02G193300 Carya illinoinensis HOM05D001594 ORTHO05D002862 3.0e-25 119.0 155 44.5
Manes.10G011200 Manihot esculenta HOM05D001594 ORTHO05D002862 3.0e-25 119.0 140 43.6
Psat5g202200 Pisum sativum HOM05D001594 ORTHO05D002862 5.1e-25 118.2 144 45.8
Cc02_g06390 Coffea canephora HOM05D001594 ORTHO05D002862 6.7e-25 117.9 155 41.3
Psat5g202120 Pisum sativum HOM05D001594 ORTHO05D002862 1.1e-24 117.1 144 45.1
Rhsim03G0144700 Rhododendron simsii HOM05D001594 ORTHO05D002862 1.1e-24 117.1 146 45.2
vmacro06960 Vaccinium macrocarpon HOM05D001594 ORTHO05D002862 1.1e-24 117.1 145 44.1
vmacro20290 Vaccinium macrocarpon HOM05D001594 ORTHO05D002862 1.1e-24 117.1 150 42.7
Hma1.2p1_0523F.1_g172240 Hydrangea macrophylla HOM05D001594 ORTHO05D002862 1.5e-24 116.7 148 41.9
Duzib106G0141 Durio zibethinus HOM05D001594 ORTHO05D002862 2.6e-24 115.9 135 46.7
PGR031G3904 Punica granatum HOM05D001594 ORTHO05D002862 2.6e-24 115.9 150 42.0
GSVIVG01032802001 Vitis vinifera HOM05D001594 ORTHO05D002862 2.6e-24 115.9 154 40.9
MBI03_g40961_MAGBIO Magnolia biondii HOM05D001594 ORTHO05D002862 4.4e-24 115.2 154 44.2
Rhsim05G0216900 Rhododendron simsii HOM05D001594 ORTHO05D002862 7.4e-24 114.4 149 44.3
AT5G05570 Arabidopsis thaliana HOM05D001594 ORTHO05D002862 9.7e-24 114.0 151 45.7
ATR0681G298 Amborella trichopoda HOM05D001594 ORTHO05D002862 1.3e-23 113.6 148 43.9
Prupe.2G251300 Prunus persica HOM05D001594 ORTHO05D002862 1.3e-23 113.6 155 40.6
Nn2g10868 Nelumbo nucifera HOM05D001594 ORTHO05D002862 1.7e-23 113.2 154 42.2
PGR044G1719 Punica granatum HOM05D001594 ORTHO05D002862 2.2e-23 112.8 155 40.6
BcaC06g32266 Brassica carinata HOM05D001594 ORTHO05D002862 3.7e-23 112.1 151 45.0
A10p30730 Brassica napus HOM05D001594 ORTHO05D002862 3.7e-23 112.1 151 45.0
C09p71220 Brassica napus HOM05D001594 ORTHO05D002862 3.7e-23 112.1 151 45.0
BolC9t59883H Brassica oleracea HOM05D001594 ORTHO05D002862 3.7e-23 112.1 151 45.0
MELO3C009157.2 Cucumis melo HOM05D001594 ORTHO05D002862 3.7e-23 112.1 153 41.8
Thhalv10012508m.g Eutrema salsugineum HOM05D001594 ORTHO05D002862 3.7e-23 112.1 151 44.4
THA.LOC104826848 Tarenaya hassleriana HOM05D001594 ORTHO05D002862 3.7e-23 112.1 152 43.4
BraA10t45114Z Brassica rapa HOM05D001594 ORTHO05D002862 4.8e-23 111.7 151 45.0
Nitab4.5_0002020g0060 Nicotiana tabacum HOM05D001594 ORTHO05D002862 6.3e-23 111.3 153 41.8
Peaxi162Scf00170g00123 Petunia axillaris HOM05D001594 ORTHO05D002862 6.3e-23 111.3 152 41.4
Lalb_Chr04g0250541 Lupinus albus HOM05D001594 ORTHO05D002862 8.2e-23 110.9 151 42.4
BraA02t04854Z Brassica rapa HOM05D001594 ORTHO05D002862 1.1e-22 110.5 152 44.7
DCAR_010464 Daucus carota HOM05D001594 ORTHO05D002862 1.1e-22 110.5 146 39.7
Solyc09g005600.3 Solanum lycopersicum HOM05D001594 ORTHO05D002862 1.1e-22 110.5 147 40.1
CARHR207690 Cardamine hirsuta HOM05D001594 ORTHO05D002862 1.4e-22 110.2 151 44.4
CSS0043863 Camellia sinensis var. sinensis HOM05D001594 ORTHO05D002862 1.8e-22 109.8 140 46.4
CsaV3_3G033670 Cucumis sativus L. HOM05D001594 ORTHO05D002862 1.8e-22 109.8 155 41.3
Eucgr.A00527 Eucalyptus grandis HOM05D001594 ORTHO05D002862 1.8e-22 109.8 152 44.1
C02p02420 Brassica napus HOM05D001594 ORTHO05D002862 2.4e-22 109.4 151 44.4
Sopen09g001500 Solanum pennellii HOM05D001594 ORTHO05D002862 2.4e-22 109.4 153 38.6
VMungo0647G1485 Vigna mungo HOM05D001594 ORTHO05D002862 2.4e-22 109.4 148 41.9
AL6G15460 Arabidopsis lyrata HOM05D001594 ORTHO05D002862 3.1e-22 109.0 151 44.4
FvH4_7g24600 Fragaria vesca HOM05D001594 ORTHO05D002862 3.1e-22 109.0 151 40.4
Atru.chr12.56 Acer truncatum HOM05D001594 ORTHO05D002862 4.1e-22 108.6 153 41.8
FAN06G3364 Fragaria x ananassa HOM05D001594 ORTHO05D002862 4.1e-22 108.6 151 39.7
Thecc.10G015000 Theobroma cacao HOM05D001594 ORTHO05D002862 4.1e-22 108.6 149 42.3
Carub.0006s0447 Capsella rubella HOM05D001594 ORTHO05D002862 5.3e-22 108.2 151 43.7
Nitab4.5_0000261g0050 Nicotiana tabacum HOM05D001594 ORTHO05D002862 5.3e-22 108.2 153 41.2
Aa31LG11G6630 Aethionema arabicum HOM05D001594 ORTHO05D002862 7.0e-22 107.8 151 43.7
MD01G1154200 Malus domestica HOM05D001594 ORTHO05D002862 9.1e-22 107.5 155 41.9
Sabra08G0051300 Salix brachista HOM05D001594 ORTHO05D002862 9.1e-22 107.5 153 40.5
Sed0001337 Sechium edule HOM05D001594 ORTHO05D002862 9.1e-22 107.5 151 39.7
Sed0025556 Sechium edule HOM05D001594 ORTHO05D002862 9.1e-22 107.5 151 39.7
FAN01G1400 Fragaria x ananassa HOM05D001594 ORTHO05D002862 1.2e-21 107.1 151 39.7
Duzib128G1282 Durio zibethinus HOM05D001594 ORTHO05D002862 1.5e-21 106.7 154 39.6
Eucgr.J00199 Eucalyptus grandis HOM05D001594 ORTHO05D002862 1.5e-21 106.7 155 37.4
TPR.G38423 Trifolium pratense HOM05D001594 ORTHO05D002862 1.5e-21 106.7 151 39.1
Phvul.008G223200 Phaseolus vulgaris HOM05D001594 ORTHO05D002862 2.0e-21 106.3 148 40.5
Potri.010G187700 Populus trichocarpa HOM05D001594 ORTHO05D002862 2.0e-21 106.3 153 40.5
LjContig00357g0010800 Lotus japonicus HOM05D001594 ORTHO05D002862 2.6e-21 105.9 151 41.1
BolC2t06205H Brassica oleracea HOM05D001594 ORTHO05D002862 3.4e-21 105.5 152 43.4
COL.COLO4_25745 Corchorus olitorius HOM05D001594 ORTHO05D002862 4.5e-21 105.1 154 39.6
Lsat_1_v5_gn_9_35340 Lactuca sativa HOM05D001594 ORTHO05D002862 5.9e-21 104.8 155 38.1
FAN03G3481 Fragaria x ananassa HOM05D001594 ORTHO05D002862 7.7e-21 104.4 151 39.1
Medtr5g082840 Medicago truncatula HOM05D001594 ORTHO05D002862 1.0e-20 104.0 151 41.1
Oeu004693.6 Olea europaea HOM05D001594 ORTHO05D002862 1.0e-20 104.0 160 38.8
Cfa001308 Carpinus fangiana HOM05D001594 ORTHO05D002862 1.3e-20 103.6 155 41.3
Ca_05970_v3 Cicer arietinum L. HOM05D001594 ORTHO05D002862 1.7e-20 103.2 151 39.1
Migut.F01397 Erythranthe guttata HOM05D001594 ORTHO05D002862 1.7e-20 103.2 153 41.2
Sp6g37290 Schrenkiella parvula HOM05D001594 ORTHO05D002862 2.2e-20 102.8 149 44.3
THA.LOC104823185 Tarenaya hassleriana HOM05D001594 ORTHO05D002862 2.2e-20 102.8 150 41.3
Haze_17237 Corylus avellana HOM05D001594 ORTHO05D002862 2.9e-20 102.4 155 40.6
ECA247G0278 Erigeron canadensis HOM05D001594 ORTHO05D002862 2.9e-20 102.4 153 38.6
Glyma.02G257800 Glycine max HOM05D001594 ORTHO05D002862 2.9e-20 102.4 147 40.1
SGA_v2.0_scaffold76G25115 Striga asiatica HOM05D001594 ORTHO05D002862 2.9e-20 102.4 149 38.3
ClCG07G004300 Citrullus lanatus HOM05D001594 ORTHO05D002862 5.0e-20 101.7 151 37.7
Gohir.D04G063466 Gossypium hirsutum HOM05D001594 ORTHO05D002862 5.0e-20 101.7 154 39.6
Gohir.D04G068000 Gossypium hirsutum HOM05D001594 ORTHO05D002862 5.0e-20 101.7 154 39.6
Gorai.012G077100 Gossypium raimondii HOM05D001594 ORTHO05D002862 5.0e-20 101.7 154 39.6
Gohir.A05G330000 Gossypium hirsutum HOM05D001594 ORTHO05D002862 6.5e-20 101.3 154 39.6
Psat2g031840 Pisum sativum HOM05D001594 ORTHO05D002862 8.5e-20 100.9 151 39.1
ECA233G4237 Erigeron canadensis HOM05D001594 ORTHO05D002862 1.4e-19 100.1 155 38.7
Cc06_g01210 Coffea canephora HOM05D001594 ORTHO05D002862 1.9e-19 99.8 152 40.8
MSTRG.8337 Avicennia marina HOM05D001594 ORTHO05D002862 2.5e-19 99.4 155 34.8
arahy.Tifrunner.gnm1.ann1.KP3J42 Arachis hypogaea HOM05D001594 ORTHO05D002862 4.2e-19 98.6 151 39.1
Lsat_1_v5_gn_8_11660 Lactuca sativa HOM05D001594 ORTHO05D002862 4.2e-19 98.6 155 38.7
Ah.16g103590 Amaranthus hybridus HOM05D001594 ORTHO05D002862 5.5e-19 98.2 151 38.4
CAN.G740.5 Capsicum annuum HOM05D001594 ORTHO05D000105 5.5e-19 98.2 145 40.7
Zm00001eb331570 Zea mays HOM05D001594 ORTHO05D002862 7.2e-19 97.8 148 36.5
arahy.Tifrunner.gnm1.ann1.0534HL Arachis hypogaea HOM05D001594 ORTHO05D002862 9.4e-19 97.4 151 38.4
MELO3C026791.2 Cucumis melo HOM05D001594 ORTHO05D002862 9.4e-19 97.4 151 37.7
Sc10g0002430 Simmondsia chinensis HOM05D001594 ORTHO05D002862 9.4e-19 97.4 148 35.8
AUR62022896 Chenopodium quinoa HOM05D001594 ORTHO05D002862 1.2e-18 97.1 151 37.7
HanXRQChr10g0294031 Helianthus annuus HOM05D001594 ORTHO05D002862 1.6e-18 96.7 153 37.3
TWI09G1043 Tripterygium wilfordii HOM05D001594 ORTHO05D002862 1.6e-18 96.7 155 40.0
SalBow5G3445 Salvia bowleyana HOM05D001594 ORTHO05D002862 2.1e-18 96.3 160 36.2
Sed0018377 Sechium edule HOM05D001594 ORTHO05D002862 2.1e-18 96.3 145 37.2
CsaV3_5G010240 Cucumis sativus L. HOM05D001594 ORTHO05D002862 2.7e-18 95.9 155 36.8
Glyma.18G202700 Glycine max HOM05D001594 ORTHO05D002862 2.7e-18 95.9 147 39.5
SGA_v2.0_scaffold2G01071 Striga asiatica HOM05D001594 ORTHO05D002862 2.7e-18 95.9 149 37.6
EL10Ac2g04845 Beta vulgaris HOM05D001594 ORTHO05D002862 3.6e-18 95.5 144 38.9
HanXRQChr08g0221751 Helianthus annuus HOM05D001594 ORTHO05D002862 3.6e-18 95.5 155 36.1
Os07g0693700 Oryza sativa ssp. japonica HOM05D001594 ORTHO05D002862 3.6e-18 95.5 152 36.2
CANSAT56G2210 Cannabis sativa HOM05D001594 ORTHO05D002862 4.7e-18 95.1 151 40.4
AUR62012263 Chenopodium quinoa HOM05D001594 ORTHO05D002862 8.0e-18 94.4 151 36.4
Ciclev10030572m.g Citrus clementina HOM05D001594 ORTHO05D002862 1.4e-17 93.6 145 37.9
Hund15923 Selenicereus undatus HOM05D001594 ORTHO05D002862 1.8e-17 93.2 155 33.5
Atru.chr12.50 Acer truncatum HOM05D001594 ORTHO05D002862 2.3e-17 92.8 108 47.2
SHI18155 Sapria himalayana HOM05D001594 ORTHO05D002862 3.0e-17 92.4 149 39.6
Nitab4.5_0005018g0040 Nicotiana tabacum HOM05D001594 ORTHO05D002862 5.7e-16 88.2 155 36.8
RcHm_v2.0_Chr1g0370431 Rosa chinensis HOM05D001594 ORTHO05D002862 9.7e-16 87.4 119 39.5
Migut.J00151 Erythranthe guttata HOM05D001594 ORTHO05D002862 2.2e-15 86.3 149 35.6
RcHm_v2.0_Chr0c22g0500591 Rosa chinensis HOM05D001594 ORTHO05D002862 3.7e-15 85.5 119 41.2
Hund13874 Selenicereus undatus HOM05D001594 ORTHO05D002862 6.3e-15 84.7 148 32.4
BcaB05g21696 Brassica carinata HOM05D001594 ORTHO05D002862 1.2e-13 80.5 141 36.9
Solyc06g051380.3 Solanum lycopersicum HOM05D001594 ORTHO05D002862 1.2e-13 80.5 117 39.3
Psat6g093760 Pisum sativum HOM05D001594 ORTHO05D002862 3.5e-13 79.0 154 33.1
Sopen06g017360 Solanum pennellii HOM05D001594 ORTHO05D002862 3.5e-13 79.0 117 39.3
Nitab4.5_0012190g0010 Nicotiana tabacum HOM05D001594 ORTHO05D002862 2.2e-12 76.3 146 36.3
Potri.008G069700 Populus trichocarpa HOM05D001594 ORTHO05D002862 1.1e-11 73.9 97 43.3
PGSC0003DMG402008471 Solanum tuberosum HOM05D001594 ORTHO05D002862 9.4e-11 70.9 109 38.5
Peaxi162Scf00284g01036 Petunia axillaris HOM05D001594 ORTHO05D002862 1.2e-10 70.5 149 35.6
CiPaw.16G020200 Carya illinoinensis HOM05D001594 ORTHO05D002862 1.2e-08 63.9 92 41.3
CDE03G0118 Ceratophyllum demersum HOM05D001594 ORTHO05D002862 3.7e-07 58.9 142 28.2
unitig_26.g9086 Utricularia gibba HOM05D001594 ORTHO05D002862 9.1e-06 54.3 77 41.6


User provided reference genes

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