Gene: AT5G05570

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G05570
  • Transcript Identifier AT5G05570.2
  • Gene Type Coding gene
  • Location Chr5 : 1656766-1663728 : positive

Gene Family Information

  • ID HOM05D001594
  • #Genes/#Species 404/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G05570.2
  • uniprot Q9FFF8

Descriptions

  • Description transducin family protein / WD-40 repeat family protein
  • Computational description transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: methyltransferase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: vesicle-mediated transport, methylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052), WD40 repeat, subgroup (InterPro:IPR019781), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G35560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Computational description transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: methyltransferase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: vesicle-mediated transport, methylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052), WD40 repeat, subgroup (InterPro:IPR019781), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G35560.2).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016192
IEA
Gene Ontologyvesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0050790
IEA
GOA Databaseregulation of catalytic activity
GO:0017157
IBA
Gene Ontologyregulation of exocytosis1
GO:0009555
IMP
Gene Ontologypollen development2
GO:0032259
IEA
Gene Ontologymethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005096
IBA
Gene OntologyGTPase activator activity1
GO:0005515
IEA
InterProprotein binding
GO:0019905
IBA
Gene Ontologysyntaxin binding1
GO:0045159
IBA
Gene Ontologymyosin II binding1
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0000149
IPI
Gene OntologySNARE binding2
GO:0008168
IEA
Gene Ontologymethyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016021
IEA
Gene Ontologyintegral component of membrane
GO:0016021
IEA
InterProintegral component of membrane
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
IBA
Gene Ontologyplasma membrane1
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005802
IDA
Gene Ontologytrans-Golgi network2
GO:0005770
IDA
Gene Ontologylate endosome2
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
IPR001680 WD40 repeat
IPR001388 Synaptobrevin
Mapman id Description
22.3.5.2.3 Vesicle trafficking.post-Golgi trafficking.target membrane fusion.regulation.regulatory protein (TMS)