Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 0.0e+00 1813.9 925 100.0
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 0.0e+00 1171.8 929 66.5
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 0.0e+00 1124.0 936 63.7
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 5.0e-307 1057.7 947 58.4
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.2e-289 1000.0 933 57.2
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 1.0e-288 996.9 957 56.6
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 2.2e-286 989.2 937 57.0
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 4.8e-286 988.0 935 56.8
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 2.2e-283 979.2 959 55.7
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 3.8e-283 978.4 935 56.5
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 6.5e-283 977.6 949 56.3
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 3.2e-282 975.3 944 55.4
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 4.2e-282 974.9 945 55.3
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 4.2e-282 974.9 941 54.7
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 6.1e-281 971.1 947 54.8
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.2e-276 956.8 948 54.5
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 2.0e-276 956.1 950 54.8
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 2.7e-276 955.7 957 54.4
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 3.5e-276 955.3 939 54.3
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 1.0e-275 953.7 866 60.0
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 4.2e-274 948.3 945 54.7
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 5.5e-274 948.0 960 53.5
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 4.7e-273 944.9 952 53.5
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 8.0e-273 944.1 964 52.7
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 8.8e-272 940.6 954 54.2
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 1.2e-271 940.3 938 54.2
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 2.0e-271 939.5 953 53.8
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 2.0e-271 939.5 956 54.0
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 2.0e-268 929.5 921 54.8
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.1e-266 923.7 948 53.1
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 4.7e-265 918.3 937 53.1
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 1.8e-264 916.4 974 52.0
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.2e-263 913.7 942 52.2
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 1.3e-262 910.2 956 51.9
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 1.7e-262 909.8 938 52.2
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 2.2e-262 909.4 937 53.1
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 1.8e-261 906.4 824 58.9
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 2.4e-261 906.0 950 51.8
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 2.4e-261 906.0 946 53.7
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 5.4e-261 904.8 938 52.3
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 6.6e-259 897.9 962 51.7
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 3.3e-258 895.6 941 51.5
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.3e-258 895.2 980 50.7
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 3.6e-257 892.1 924 53.7
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 2.0e-255 886.3 939 51.9
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.1e-253 880.6 937 51.2
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 9.2e-253 877.5 939 51.7
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 5.0e-251 871.7 944 49.0
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 1.8e-248 863.2 928 51.2
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 8.9e-248 860.9 933 49.7
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 1.2e-247 860.5 940 49.9
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.4e-247 859.0 932 49.8
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 6.4e-246 854.7 937 51.0
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.1e-245 852.0 1018 48.3
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 2.0e-244 849.7 939 50.2
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 1.7e-243 846.7 936 49.0
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 2.3e-243 846.3 918 50.5
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 3.0e-243 845.9 942 50.6
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 1.9e-242 843.2 945 48.9
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 9.5e-242 840.9 921 50.5
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 4.7e-241 838.6 927 49.9
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 4.7e-241 838.6 937 49.4
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 1.8e-240 836.6 942 48.3
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 9.8e-239 830.9 949 49.6
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.7e-238 830.1 952 48.0
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 2.9e-238 829.3 942 49.6
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 4.1e-237 825.5 951 48.7
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 6.2e-233 811.6 934 49.8
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 8.1e-233 811.2 916 49.7
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 1.5e-226 790.4 974 45.5
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.7e-222 776.9 984 47.0
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 1.1e-221 774.2 950 47.6
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.9e-221 773.5 953 47.5
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 1.2e-220 770.8 942 47.7
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.5e-218 763.8 973 46.2
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 1.3e-217 760.8 949 47.5
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 9.9e-215 751.1 794 53.1
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 1.3e-214 750.7 944 47.0
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.3e-214 750.7 802 52.7
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.7e-214 750.4 809 51.5
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.9e-213 746.9 951 45.8
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.8e-211 740.3 974 45.4
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 4.0e-208 729.2 941 45.8
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 9.9e-207 724.5 855 46.3
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 2.4e-205 719.9 924 45.1
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.2e-204 717.6 932 45.8
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 5.1e-203 712.2 956 45.0
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 6.2e-201 705.3 953 44.3
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 3.4e-199 699.5 938 44.9
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 4.9e-198 695.7 951 44.4
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 1.2e-196 691.0 952 44.3
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 1.1e-194 684.5 956 43.8
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 1.2e-191 674.5 881 45.6
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 5.5e-189 665.6 882 45.7
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 8.2e-185 651.7 717 49.7
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.2e-183 647.9 563 60.7
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.4e-183 646.4 563 60.6
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 2.1e-180 637.1 1022 39.7
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 1.4e-173 614.4 728 47.8
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.2e-166 590.5 841 43.8
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 9.4e-165 585.1 645 49.9
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 4.1e-160 569.7 863 42.1
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 7.0e-160 568.9 927 40.7
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 7.7e-159 565.5 855 40.4
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 2.0e-154 550.8 804 42.3
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 3.6e-148 530.0 659 45.5
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.0e-146 524.2 767 42.2
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.2e-145 520.8 882 38.5
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.0e-143 514.2 759 41.9
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.3e-134 485.0 656 42.5
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 2.1e-132 477.6 1032 34.7
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 2.8e-132 477.2 675 42.2
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 6.0e-127 459.5 478 54.2
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-125 454.9 687 41.8
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 1.9e-125 454.5 689 41.7
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 6.4e-121 439.5 661 41.0
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 8.3e-121 439.1 661 41.0
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 9.2e-120 435.6 811 37.0
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 3.9e-118 430.3 823 36.5
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 1.6e-116 424.9 958 32.0
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-111 408.7 557 43.1
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-106 392.1 533 42.2
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 6.9e-99 366.3 583 39.5
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 4.2e-96 357.1 354 53.1
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 5.1e-94 350.1 251 67.7
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 9.9e-90 335.9 587 37.0
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 5.1e-86 323.6 263 62.0
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 5.6e-85 320.1 557 38.8
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 1.4e-70 272.3 338 44.7
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.1e-67 260.8 224 62.1
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 2.5e-64 251.5 349 42.4
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 5.1e-62 243.8 551 34.1
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 2.9e-57 228.0 1178 23.7
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 2.0e-53 215.3 266 43.6
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 5.3e-51 207.2 154 64.3
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.2e-50 206.1 274 43.8
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 6.5e-49 200.3 200 50.5
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.4e-48 196.4 203 47.3
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 5.7e-45 187.2 193 48.2
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 7.0e-43 180.3 138 63.0
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 1.6e-39 169.1 229 44.1
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 3.8e-33 147.9 304 31.9
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 2.1e-31 142.1 427 28.3
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 1.7e-28 132.5 112 55.4
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 5.9e-26 124.0 144 50.7
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 6.6e-25 120.6 111 56.8
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 2.6e-21 108.6 211 33.2
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 9.8e-21 106.7 82 67.1
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 2.9e-20 105.1 128 43.8
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 2.4e-19 102.1 143 44.1
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 3.5e-18 98.2 375 27.5
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 6.0e-18 97.4 92 55.4
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 2.3e-17 95.5 153 37.3
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 3.9e-17 94.7 222 29.3
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 6.6e-17 94.0 153 36.6
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 5.2e-14 84.3 108 48.1
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 1.2e-13 83.2 104 47.1
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 4.9e-12 77.8 104 41.3
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 2.1e-10 72.4 226 27.4
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 6.0e-10 70.9 89 43.8
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 1.0e-09 70.1 86 44.2
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 1.3e-09 69.7 89 42.7
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 1.3e-09 69.7 86 43.0
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 1.3e-09 69.7 86 43.0
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 2.3e-09 68.9 64 54.7
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 3.0e-09 68.6 86 43.0
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 4.3e-08 64.7 81 43.2
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 4.3e-08 64.7 123 33.3
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 1.4e-06 59.7 123 33.3
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 6.8e-06 57.4 78 42.3
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 6.8e-06 57.4 78 42.3


User provided reference genes

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