Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G1729 Salvia bowleyana HOM05D003241 ORTHO05D003812 3.8e-225 785.0 570 100.0
SalBow6G5488 Salvia bowleyana HOM05D003241 ORTHO05D003812 3.8e-225 785.0 570 100.0
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 4.5e-157 558.9 364 85.4
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 6.1e-106 389.0 368 61.7
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 3.1e-102 376.7 368 58.2
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 4.1e-102 376.3 368 60.1
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 2.5e-99 367.1 375 59.2
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 3.6e-98 363.2 368 57.1
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 1.4e-97 361.3 368 56.8
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 1.4e-97 361.3 375 56.5
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 1.8e-97 360.9 368 56.8
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 6.8e-97 359.0 368 57.6
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 8.8e-97 358.6 409 52.8
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 1.5e-96 357.8 368 58.2
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 7.5e-96 355.5 375 55.2
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 2.8e-95 353.6 371 56.1
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 1.1e-94 351.7 367 55.6
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.4e-94 351.3 368 55.7
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 1.8e-94 350.9 367 55.3
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 1.8e-94 350.9 377 55.2
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 3.1e-94 350.1 371 56.3
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 4.1e-94 349.7 371 56.3
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 5.4e-94 349.4 375 57.3
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 9.1e-94 348.6 368 57.9
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 1.2e-93 348.2 371 55.5
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 5.9e-93 345.9 374 55.9
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 5.9e-93 345.9 368 55.2
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 7.7e-93 345.5 368 54.6
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 1.0e-92 345.1 366 55.7
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 6.5e-92 342.4 368 53.0
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 1.1e-91 341.7 367 53.4
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 5.5e-91 339.3 392 53.3
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 1.2e-90 338.2 379 53.8
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 1.6e-90 337.8 369 52.8
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 2.8e-90 337.0 368 54.1
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 1.0e-89 335.1 371 53.6
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 5.2e-89 332.8 377 51.5
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 8.8e-89 332.0 368 53.5
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 2.0e-88 330.9 364 53.6
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 2.2e-87 327.4 368 54.3
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 2.8e-87 327.0 376 53.2
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 8.3e-87 325.5 368 53.3
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 1.1e-86 325.1 368 53.5
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 3.1e-86 323.6 376 52.9
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 4.1e-86 323.2 368 54.3
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 9.2e-86 322.0 368 52.4
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 1.6e-85 321.2 368 53.0
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 3.5e-85 320.1 367 52.3
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 4.5e-85 319.7 368 53.3
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 2.3e-84 317.4 367 52.0
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 8.6e-84 315.5 368 52.2
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 1.5e-83 314.7 367 51.8
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 2.5e-83 313.9 369 51.5
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 5.6e-83 312.8 368 50.8
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 5.6e-83 312.8 365 51.0
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 5.6e-83 312.8 368 51.9
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 7.3e-83 312.4 365 51.5
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 7.3e-83 312.4 377 52.0
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 1.2e-82 311.6 365 51.2
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 1.4e-81 308.1 368 51.1
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 1.8e-81 307.8 371 50.4
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 3.0e-81 307.0 377 49.9
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 5.2e-81 306.2 368 51.4
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 6.8e-81 305.8 368 51.4
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 2.0e-80 304.3 368 51.9
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 2.0e-80 304.3 369 49.9
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 2.0e-80 304.3 367 52.9
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 4.4e-80 303.1 368 51.9
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 9.8e-80 302.0 367 51.5
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 1.3e-79 301.6 363 51.2
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.7e-79 301.2 369 50.7
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 3.7e-79 300.1 368 51.1
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 3.7e-79 300.1 368 51.1
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 6.4e-79 299.3 345 50.1
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 2.4e-78 297.4 367 51.8
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 7.0e-78 295.8 367 49.6
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 3.5e-77 293.5 345 51.9
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 1.3e-76 291.6 377 48.5
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 1.1e-73 282.0 371 48.8
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 4.0e-73 280.0 369 47.7
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 4.0e-73 280.0 369 47.7
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 6.8e-73 279.3 372 49.2
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 2.0e-72 277.7 376 46.8
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 2.0e-72 277.7 376 46.8
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 7.5e-72 275.8 372 47.0
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 1.7e-71 274.6 367 47.4
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.7e-71 274.6 355 49.0
Glyma.15G216300 Glycine max HOM05D003241 ORTHO05D003812 3.2e-70 270.4 261 61.3
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 7.0e-70 269.2 367 47.7
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.5e-69 266.9 369 46.6
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 7.8e-69 265.8 367 46.3
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 3.0e-68 263.8 368 45.9
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 5.0e-68 263.1 370 46.2
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 6.6e-68 262.7 367 46.3
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 2.5e-67 260.8 368 45.1
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 5.6e-67 259.6 370 46.2
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.5e-67 258.8 368 45.1
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 1.2e-66 258.5 367 45.5
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 4.7e-66 256.5 375 45.1
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 1.4e-65 255.0 369 45.0
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 5.2e-65 253.1 369 45.0
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 6.8e-65 252.7 369 45.0
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.4e-64 250.4 369 44.7
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 5.8e-64 249.6 369 44.4
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 7.5e-64 249.2 365 45.8
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 9.9e-64 248.8 369 44.7
Sc22g0003580 Simmondsia chinensis HOM05D003241 ORTHO05D003812 1.3e-63 248.4 260 54.6
MBI14_g36867_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 3.5e-61 240.4 240 57.1
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 1.3e-60 238.4 373 41.6
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 3.9e-60 236.9 365 43.3
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 5.1e-60 236.5 378 41.3
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 6.2e-58 229.6 366 43.4
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.4e-57 228.4 371 43.1
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 2.0e-56 224.6 397 40.3
QL09p049206 Quercus lobata HOM05D003241 ORTHO05D003812 5.8e-56 223.0 171 67.3
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 7.1e-54 216.1 400 39.5
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.7e-53 214.2 345 42.9
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 4.9e-47 193.4 367 38.7
ClCG08G000520 Citrullus lanatus HOM05D003241 ORTHO05D003812 6.0e-45 186.4 261 47.9
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.7e-44 184.9 379 36.9
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 1.7e-44 184.9 379 35.6
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 6.6e-44 183.0 351 38.7
TPR.G37958 Trifolium pratense HOM05D003241 ORTHO05D003812 6.2e-42 176.4 265 46.4
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 6.0e-37 159.8 384 34.1
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 6.0e-37 159.8 361 36.6
BcaC04g18847 Brassica carinata HOM05D003241 ORTHO05D003812 3.3e-35 154.1 179 52.0
Eucgr.G01007 Eucalyptus grandis HOM05D003241 ORTHO05D003812 2.9e-31 141.0 250 43.6
AagrBONN_evm.TU.Sc2ySwM_344.225 Anthoceros agrestis HOM05D003241 ORTHO05D003812 6.0e-29 133.3 289 36.3
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 1.9e-27 128.3 207 41.5
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 9.6e-27 125.9 261 37.5
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 2.1e-26 124.8 443 29.1
Lj1A444T9 Lonicera japonica HOM05D003241 ORTHO05D003812 1.8e-25 121.7 140 54.3
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 3.9e-20 104.0 89 58.4
Lju445A0T12 Lonicera japonica HOM05D003241 ORTHO05D003812 3.9e-20 104.0 140 50.7
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 1.9e-19 101.7 184 37.5
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 4.3e-19 100.5 155 44.5
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 4.3e-19 100.5 86 60.5
CARHR196420 Cardamine hirsuta HOM05D003241 ORTHO05D003812 1.6e-18 98.6 96 59.4
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 2.2e-18 98.2 203 37.9
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 3.4e-16 90.9 76 65.8
vmacro00335 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.7e-15 88.6 170 41.8
Hma1.2p1_0148F.1_g066050 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 5.0e-15 87.0 91 57.1
AagrBONN_evm.TU.Sc2ySwM_344.222 Anthoceros agrestis HOM05D003241 ORTHO05D003812 8.5e-15 86.3 190 36.3
SHI33105 Sapria himalayana HOM05D000743 ORTHO05D000580 1.9e-14 85.1 278 31.7
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 2.5e-14 84.7 63 69.8
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 7.2e-14 83.2 204 35.3
Hma1.2p1_0765F.1_g215090 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 7.2e-14 83.2 104 47.1
Hma1.2p1_0358F.1_g134820 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 1.2e-13 82.4 104 47.1
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 7.9e-13 79.7 77 55.8
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 1.0e-12 79.3 85 48.2
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.4e-12 79.0 156 37.2
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.3e-12 78.2 162 40.7
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 7.4e-11 73.2 72 54.2
Eucgr.K00104 Eucalyptus grandis HOM05D002350 ORTHO05D000091 2.8e-10 71.2 76 55.3
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 6.3e-10 70.1 155 40.0
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 1.2e-08 65.9 388 26.8
Aqoxy2G01894 Aquilegia oxysepala HOM05D000395 ORTHO05D000088 2.6e-08 64.7 71 56.3
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 3.4e-08 64.3 104 39.4
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 2.5e-06 58.2 142 35.2


User provided reference genes

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