Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 0.0e+00 1080.9 571 100.0
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 4.0e-267 924.5 572 84.8
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.4e-248 862.8 553 82.3
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 1.4e-248 862.8 632 73.4
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 2.3e-246 855.5 573 79.1
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 3.1e-243 845.1 572 78.1
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 3.4e-242 841.6 573 77.5
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 7.7e-242 840.5 574 76.8
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 1.0e-241 840.1 579 77.7
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.7e-241 839.3 571 75.8
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 8.5e-241 837.0 571 77.4
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 8.5e-241 837.0 575 77.2
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 1.4e-240 836.3 574 77.7
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 1.4e-240 836.3 574 77.7
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 5.5e-240 834.3 571 77.2
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 7.2e-240 833.9 577 77.8
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 4.4e-237 824.7 572 76.7
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 7.4e-237 823.9 575 76.5
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 9.7e-237 823.5 572 76.0
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.7e-236 822.8 584 75.5
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 2.2e-236 822.4 572 76.4
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.2e-236 822.4 591 75.3
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 8.2e-236 820.5 584 75.3
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 8.2e-236 820.5 572 76.4
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 1.4e-235 819.7 574 76.3
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 1.8e-235 819.3 573 75.9
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.4e-235 818.9 571 75.7
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 2.4e-235 818.9 574 76.1
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 5.3e-235 817.8 572 74.7
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.2e-234 816.6 571 75.8
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.5e-234 816.2 575 75.8
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.5e-234 816.2 572 74.7
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 5.9e-234 814.3 574 76.5
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.0e-233 813.5 571 75.7
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 1.5e-232 809.7 571 73.9
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 7.2e-232 807.4 573 74.9
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.2e-231 806.6 570 75.1
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 2.7e-231 805.4 548 77.9
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 4.7e-231 804.7 572 74.3
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 8.0e-231 803.9 580 73.6
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.0e-230 803.5 575 75.5
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 1.0e-230 803.5 573 76.4
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 1.4e-230 803.1 736 62.6
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 1.4e-230 803.1 572 75.0
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 2.3e-230 802.4 572 75.2
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 1.5e-229 799.7 572 75.0
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 2.0e-229 799.3 571 75.5
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 2.0e-229 799.3 571 74.8
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 2.0e-229 799.3 572 74.8
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 7.4e-229 797.3 572 75.3
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 8.2e-228 793.9 572 73.8
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 2.6e-226 788.9 573 73.3
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 7.7e-226 787.3 592 72.5
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 7.7e-226 787.3 577 73.7
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 1.7e-225 786.2 572 74.0
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 1.5e-224 783.1 575 75.0
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 4.2e-224 781.6 574 71.6
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 7.2e-224 780.8 572 74.0
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 2.1e-223 779.2 576 72.7
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 3.6e-223 778.5 573 74.0
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 4.0e-222 775.0 564 74.1
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 4.0e-222 775.0 576 75.5
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 5.2e-222 774.6 573 73.1
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 5.7e-221 771.2 580 72.4
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.8e-219 766.1 531 77.2
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 1.8e-219 766.1 576 72.9
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 3.1e-219 765.4 579 73.1
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 5.9e-218 761.1 572 70.8
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.3e-217 760.0 575 70.3
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.3e-217 760.0 576 70.1
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.7e-217 759.6 576 70.1
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.2e-217 759.2 576 70.0
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.1e-216 756.9 576 69.8
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.2e-215 753.4 536 75.4
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.8e-214 749.6 558 72.0
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 1.8e-214 749.6 580 70.5
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.8e-214 749.6 576 70.7
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 3.4e-213 745.3 583 71.2
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.4e-213 745.0 603 67.0
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 4.4e-213 745.0 590 69.8
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 6.3e-212 741.1 575 70.4
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.0e-209 733.8 676 62.4
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.8e-207 725.7 555 70.5
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 3.6e-207 725.3 539 71.4
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 3.6e-207 725.3 572 69.4
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 8.0e-207 724.2 590 69.3
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.0e-206 723.8 559 70.8
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 3.4e-205 718.8 575 70.4
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 4.4e-205 718.4 586 67.4
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 3.2e-203 712.2 554 68.2
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 5.4e-203 711.4 568 69.4
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 5.4e-203 711.4 568 69.4
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 5.4e-203 711.4 568 69.4
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 2.0e-202 709.5 556 68.5
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 1.0e-201 707.2 568 69.0
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 5.0e-201 704.9 569 67.8
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 8.6e-201 704.1 504 72.4
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 1.1e-200 703.7 568 68.7
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.2e-197 693.7 520 72.5
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 1.3e-196 690.3 556 68.3
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 8.3e-196 687.6 581 63.5
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 1.3e-193 680.2 562 68.0
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.5e-192 676.8 556 66.5
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 1.6e-191 673.3 575 66.4
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 3.5e-186 655.6 571 64.6
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.3e-184 649.0 577 64.6
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 9.2e-179 630.9 488 68.0
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 3.6e-167 592.4 588 58.3
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 2.4e-166 589.7 424 73.3
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 6.7e-145 518.5 387 76.0
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.6e-138 497.3 595 51.6
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 6.3e-135 485.3 582 51.0
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 5.7e-128 462.2 509 54.0
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 5.7e-128 462.2 509 54.0
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 5.7e-128 462.2 509 54.0
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.4e-123 447.6 338 71.0
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 4.7e-122 442.6 477 54.9
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 1.3e-116 424.5 265 82.3
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 5.0e-84 316.2 330 58.5
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 6.2e-82 309.3 237 70.0
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 3.1e-81 307.0 198 80.3
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 6.0e-77 292.7 342 50.9
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 7.8e-77 292.4 273 58.6
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 1.0e-76 292.0 557 40.2
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 3.0e-76 290.4 164 87.8
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 1.1e-73 282.0 161 87.6
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 7.3e-67 259.2 164 81.7
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 8.1e-66 255.8 430 41.4
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.0e-64 251.1 196 69.4
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-59 235.3 279 50.2
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.4e-54 217.6 417 39.1
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 3.3e-51 207.2 132 77.3
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.6e-48 197.6 134 70.9
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 6.0e-45 186.4 168 64.3
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 7.9e-45 186.0 118 85.6
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 4.3e-43 180.3 115 79.1
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 1.5e-40 171.8 170 61.8
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 8.4e-39 166.0 600 30.3
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.4e-33 148.7 204 48.5
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 1.9e-30 138.3 157 56.7
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 7.4e-27 126.3 73 83.6
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 4.8e-26 123.6 158 47.5
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 3.2e-22 110.9 75 72.0
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 7.2e-22 109.8 57 93.0
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.0e-20 105.9 84 70.2
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 1.8e-20 105.1 182 39.6
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 8.7e-20 102.8 76 64.5
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 6.3e-18 96.7 73 71.2
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 9.1e-17 92.8 139 41.0
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 2.0e-16 91.7 68 70.6
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 1.3e-15 89.0 86 53.5
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 3.8e-15 87.4 70 64.3
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.1e-13 81.6 56 80.4
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 1.0e-12 79.3 87 46.0
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 6.7e-12 76.6 49 81.6
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.1e-09 69.3 63 63.5
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 4.1e-09 67.4 36 83.3
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 2.2e-07 61.6 53 56.6
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 8.5e-07 59.7 53 54.7


User provided reference genes

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