Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.4e-205 719.5 404 100.0
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.6e-137 493.4 324 85.8
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 6.2e-137 491.5 324 85.5
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 6.4e-134 481.5 326 82.5
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 3.0e-131 472.6 332 81.9
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 3.9e-131 472.2 319 84.0
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 4.9e-126 455.3 320 80.3
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 1.6e-124 450.3 324 79.9
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 6.6e-123 444.9 327 78.0
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 6.6e-123 444.9 326 79.1
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 2.5e-122 443.0 324 78.4
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 2.5e-122 443.0 325 78.8
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 9.6e-122 441.0 331 78.5
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 9.6e-122 441.0 325 79.1
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 2.1e-121 439.9 327 79.2
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 1.8e-120 436.8 325 78.2
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 2.4e-120 436.4 328 76.5
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 9.0e-120 434.5 325 79.1
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 9.0e-120 434.5 325 76.6
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 3.4e-119 432.6 285 86.0
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 9.9e-119 431.0 327 76.1
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.3e-118 430.6 327 77.1
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 2.2e-118 429.9 335 74.6
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 2.9e-118 429.5 330 75.5
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 8.4e-118 427.9 324 76.2
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 8.4e-118 427.9 325 76.9
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 8.4e-118 427.9 325 76.6
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.9e-117 426.8 321 77.6
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 2.4e-117 426.4 324 75.6
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 2.4e-117 426.4 326 75.2
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 3.2e-117 426.0 340 74.4
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.1e-117 424.9 324 77.2
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 9.3e-117 424.5 327 77.4
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 9.3e-117 424.5 334 74.9
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.6e-116 423.7 329 75.7
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 2.7e-116 422.9 326 76.1
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 2.7e-116 422.9 315 79.4
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 3.5e-116 422.5 328 75.9
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 6.0e-116 421.8 325 76.9
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 1.8e-115 420.2 325 76.0
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.8e-115 420.2 327 73.7
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 2.3e-115 419.9 330 73.9
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 3.0e-115 419.5 325 75.1
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 5.1e-115 418.7 327 74.6
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 6.7e-115 418.3 324 74.7
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 8.7e-115 417.9 334 74.9
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.5e-114 417.2 327 74.0
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 2.5e-114 416.4 326 76.1
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 2.5e-114 416.4 325 75.7
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 3.3e-114 416.0 324 75.0
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 7.4e-114 414.8 325 73.5
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 9.6e-114 414.5 327 74.9
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.3e-113 414.1 328 75.0
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 1.6e-113 413.7 324 73.1
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 2.8e-113 412.9 326 75.8
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 4.8e-113 412.1 329 74.2
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 4.8e-113 412.1 330 73.9
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 6.2e-113 411.8 330 73.6
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 6.2e-113 411.8 338 71.9
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 1.1e-112 411.0 333 75.1
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.1e-112 411.0 325 73.8
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 1.1e-112 411.0 285 79.6
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.4e-112 410.6 325 73.8
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 1.4e-112 410.6 324 75.6
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.4e-112 410.6 328 73.2
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.8e-112 410.2 326 74.5
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 2.4e-112 409.8 325 72.6
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 4.0e-112 409.1 325 74.2
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 4.0e-112 409.1 328 73.2
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 5.3e-112 408.7 327 72.5
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 5.3e-112 408.7 326 73.9
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 5.3e-112 408.7 326 72.4
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 5.3e-112 408.7 319 76.8
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 6.9e-112 408.3 324 74.4
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 6.9e-112 408.3 380 67.6
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 9.0e-112 407.9 326 74.5
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 2.6e-111 406.4 324 74.1
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 3.4e-111 406.0 325 74.8
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 3.4e-111 406.0 325 74.8
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 3.4e-111 406.0 330 73.3
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 4.5e-111 405.6 324 74.7
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 4.5e-111 405.6 322 73.9
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 5.8e-111 405.2 320 73.1
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 7.6e-111 404.8 324 74.1
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 7.6e-111 404.8 324 74.1
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.9e-110 402.9 306 69.9
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 8.4e-110 401.4 357 67.5
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.1e-109 401.0 325 73.5
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 1.4e-109 400.6 324 71.9
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.9e-109 400.2 327 73.1
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 1.9e-109 400.2 327 71.9
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 1.9e-109 400.2 328 74.1
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.4e-109 399.8 330 73.0
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 3.2e-109 399.4 324 73.1
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 3.2e-109 399.4 325 71.7
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 4.2e-109 399.1 327 74.6
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 7.1e-109 398.3 324 73.5
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 7.1e-109 398.3 299 78.6
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 9.3e-109 397.9 328 72.3
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.1e-108 396.7 327 72.8
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 2.1e-108 396.7 325 70.8
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 2.7e-108 396.4 328 73.8
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 2.7e-108 396.4 321 73.2
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 3.5e-108 396.0 329 72.0
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 4.6e-108 395.6 321 73.2
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 4.6e-108 395.6 321 73.2
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 4.6e-108 395.6 322 73.6
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.6e-108 395.6 329 72.0
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 6.0e-108 395.2 331 71.6
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 7.9e-108 394.8 325 73.8
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 1.0e-107 394.4 275 82.2
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.0e-107 394.4 327 70.9
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.3e-107 394.0 321 73.5
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-107 394.0 321 72.9
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.3e-107 394.0 321 72.9
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.8e-107 393.7 334 70.4
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.3e-107 393.3 299 77.9
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.9e-107 392.5 259 87.6
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 6.7e-107 391.7 325 72.6
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 8.7e-107 391.3 324 71.3
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.1e-106 391.0 276 79.3
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.1e-106 391.0 327 72.2
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.9e-106 390.2 307 74.3
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 5.6e-106 388.7 324 71.9
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.3e-105 387.5 324 71.6
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.6e-105 387.1 256 77.3
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.1e-105 386.7 324 71.6
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.8e-105 386.3 320 72.5
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 8.2e-105 384.8 261 86.6
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.1e-104 384.4 327 70.3
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.4e-103 379.4 302 74.8
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.9e-101 373.6 325 71.1
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.5e-101 373.2 326 70.6
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 3.2e-101 372.9 284 76.8
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 5.5e-101 372.1 301 73.8
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 4.6e-100 369.0 272 75.7
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 4.6e-100 369.0 327 70.9
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 5.1e-99 365.5 325 62.5
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 4.1e-96 355.9 326 67.5
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.6e-95 353.2 315 69.2
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 2.9e-94 349.7 262 75.6
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 8.5e-94 348.2 334 66.8
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 4.2e-93 345.9 358 62.6
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.2e-93 345.1 231 87.0
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.7e-92 343.2 227 89.4
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.0e-91 341.3 231 85.3
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.4e-91 340.9 310 69.4
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 2.9e-86 323.2 295 63.7
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.8e-86 322.8 326 62.9
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.8e-86 322.8 326 62.9
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.9e-85 320.5 252 79.8
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 2.5e-85 320.1 321 57.9
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.8e-80 303.9 270 65.6
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 5.5e-77 292.4 286 60.1
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 2.1e-76 290.4 251 59.0
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 3.0e-75 286.6 246 74.8
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 3.0e-75 286.6 250 58.0
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 7.7e-71 271.9 235 73.2
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 3.2e-69 266.5 250 70.0
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 7.2e-69 265.4 193 82.9
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 3.0e-59 233.4 218 72.5
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 4.4e-58 229.6 259 47.1
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 1.6e-55 221.1 305 46.2
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 7.7e-55 218.8 149 73.8
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.8e-51 205.7 125 80.8
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 5.4e-48 196.1 149 69.8
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.9e-46 190.3 124 75.0
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 9.8e-42 175.3 213 58.2
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 6.2e-36 156.0 138 62.3
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.4e-34 150.2 262 41.2
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 3.7e-33 146.7 100 75.0
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 2.4e-32 144.1 107 69.2
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 1.2e-31 141.7 88 79.5
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 2.3e-30 137.5 108 75.0
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 1.9e-24 117.9 76 78.9
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 5.6e-21 106.3 137 58.4
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.7e-17 94.7 107 66.4
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 4.2e-16 90.1 83 80.7
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 7.1e-16 89.4 132 46.2
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 2.3e-14 84.3 139 54.7
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.1e-08 65.5 93 43.0
SalBow3G0339 Salvia bowleyana HOM05D033935 ORTHO05D353932 3.5e-07 60.5 29 100.0


User provided reference genes

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