Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.3e-170 602.1 288 100.0
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 4.0e-114 415.2 307 70.7
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 6.2e-99 364.8 267 70.4
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.1e-98 364.0 267 70.0
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.1e-98 364.0 267 70.4
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 1.4e-98 363.6 267 70.0
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 1.8e-98 363.2 267 70.0
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 1.8e-98 363.2 267 70.0
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.4e-98 362.8 267 70.0
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 3.1e-98 362.5 267 70.4
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 5.3e-98 361.7 267 69.7
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 5.3e-98 361.7 267 69.7
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 5.3e-98 361.7 267 69.3
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 6.9e-98 361.3 267 69.3
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 6.9e-98 361.3 267 70.0
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 9.0e-98 360.9 267 69.7
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 9.0e-98 360.9 267 70.0
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 9.0e-98 360.9 267 69.3
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 9.0e-98 360.9 267 69.7
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 9.0e-98 360.9 267 69.3
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 9.0e-98 360.9 267 70.0
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 9.0e-98 360.9 267 69.7
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 9.0e-98 360.9 258 71.7
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.2e-97 360.5 267 69.7
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.5e-97 360.1 267 69.3
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 1.5e-97 360.1 267 69.3
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 1.5e-97 360.1 267 70.0
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 1.5e-97 360.1 267 69.3
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 1.5e-97 360.1 267 69.3
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.5e-97 360.1 267 69.3
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 1.5e-97 360.1 267 69.3
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 2.0e-97 359.8 267 69.3
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 2.0e-97 359.8 267 69.3
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 2.0e-97 359.8 258 71.7
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 2.0e-97 359.8 267 68.5
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 2.0e-97 359.8 267 69.7
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 2.6e-97 359.4 267 69.3
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 2.6e-97 359.4 267 69.3
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 2.6e-97 359.4 267 69.3
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 3.4e-97 359.0 267 68.9
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 3.4e-97 359.0 267 68.9
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 3.4e-97 359.0 267 68.9
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 3.4e-97 359.0 267 68.9
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 3.4e-97 359.0 267 69.3
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 3.4e-97 359.0 267 69.7
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.4e-97 359.0 267 69.3
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.4e-97 359.0 267 69.3
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 4.5e-97 358.6 267 68.9
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 4.5e-97 358.6 269 69.1
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 5.8e-97 358.2 267 68.9
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 5.8e-97 358.2 269 69.1
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 5.8e-97 358.2 267 68.9
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 7.6e-97 357.8 267 69.3
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 9.9e-97 357.5 267 68.9
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 1.3e-96 357.1 267 68.5
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 1.3e-96 357.1 267 68.5
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.7e-96 356.7 267 68.9
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 1.7e-96 356.7 267 68.9
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.7e-96 356.7 267 68.9
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-96 356.7 267 68.2
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 1.7e-96 356.7 267 69.3
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 1.7e-96 356.7 267 68.9
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 2.2e-96 356.3 267 68.5
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 2.2e-96 356.3 267 68.2
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.2e-96 356.3 267 68.9
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 2.2e-96 356.3 267 68.2
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 2.9e-96 355.9 267 68.5
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 2.9e-96 355.9 267 68.5
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 2.9e-96 355.9 267 68.9
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.8e-96 355.5 269 69.1
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 3.8e-96 355.5 268 68.7
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 3.8e-96 355.5 267 68.5
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.8e-96 355.5 391 52.4
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 4.9e-96 355.1 269 68.0
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 4.9e-96 355.1 267 68.9
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 4.9e-96 355.1 267 67.4
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 4.9e-96 355.1 267 68.9
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 4.9e-96 355.1 248 73.8
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 6.4e-96 354.8 267 68.5
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 6.4e-96 354.8 267 68.9
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 6.4e-96 354.8 269 68.4
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 6.4e-96 354.8 267 68.5
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 8.4e-96 354.4 267 67.8
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 8.4e-96 354.4 269 68.0
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 1.1e-95 354.0 267 68.2
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 1.4e-95 353.6 267 68.2
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.9e-95 353.2 267 68.2
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.9e-95 353.2 267 68.5
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.4e-95 352.8 299 61.9
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.7e-94 349.4 262 68.7
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 2.7e-94 349.4 267 66.7
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 3.5e-94 349.0 267 66.7
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 1.0e-93 347.4 267 67.0
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 1.8e-93 346.7 269 66.5
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.8e-93 346.7 267 66.3
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 2.3e-93 346.3 268 64.6
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 3.9e-93 345.5 267 67.0
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 8.7e-93 344.4 268 66.0
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 1.1e-92 344.0 266 64.3
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.5e-92 343.6 268 64.6
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 3.3e-92 342.4 268 66.0
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 4.3e-92 342.0 269 65.8
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-90 337.0 267 64.8
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-90 337.0 267 64.8
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.4e-87 327.0 303 58.1
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.9e-87 326.6 267 65.2
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.2e-87 325.5 251 67.3
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.0e-85 320.9 341 56.0
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 3.0e-85 319.3 269 63.2
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.5e-84 316.2 341 55.4
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 5.7e-84 315.1 231 70.6
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.8e-83 312.0 279 58.8
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 1.1e-79 300.8 271 57.9
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.5e-76 290.4 235 65.1
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.5e-76 289.7 259 58.7
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 3.1e-74 282.7 233 63.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.1e-71 274.2 271 55.4
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 3.2e-71 272.7 137 93.4
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.3e-67 260.8 162 76.5
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 3.4e-65 252.7 261 52.9
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 2.5e-63 246.5 256 55.9
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.8e-61 240.4 155 74.8
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 4.8e-59 232.3 203 60.1
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 7.5e-52 208.4 226 54.0
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 3.1e-50 203.0 103 93.2
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.2e-48 196.8 269 46.5
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 5.0e-48 195.7 245 49.4
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.0e-40 171.4 86 88.4
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-32 144.1 153 52.9
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 9.2e-26 121.7 58 96.6
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.2e-25 121.3 136 50.7
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.0e-25 120.6 58 94.8
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 2.0e-25 120.6 58 94.8
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.7e-25 120.2 58 94.8
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.3e-24 117.1 69 79.7
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.8e-20 101.7 58 81.0
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 1.9e-18 97.4 52 88.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 3.9e-16 89.7 52 84.6
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 2.8e-14 83.6 44 84.1
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 6.2e-06 55.8 51 58.8
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 6.2e-06 55.8 51 58.8


User provided reference genes

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