Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 2.8e-91 338.6 167 100.0
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 1.2e-65 253.4 156 78.2
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 1.7e-64 249.6 157 74.5
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 1.1e-63 246.9 155 74.8
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 1.2e-62 243.4 151 74.2
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 1.5e-60 236.5 152 73.7
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 2.5e-60 235.7 153 73.9
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 9.6e-60 233.8 153 70.6
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 9.6e-60 233.8 153 70.6
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 3.7e-59 231.9 155 70.3
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 1.4e-58 229.9 155 67.1
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 6.9e-58 227.6 147 72.8
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 3.4e-57 225.3 151 66.9
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 4.5e-57 224.9 155 69.7
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 2.9e-56 222.2 155 65.8
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 3.8e-56 221.9 148 70.3
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 6.4e-56 221.1 154 68.2
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 1.1e-55 220.3 151 67.5
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 2.4e-55 219.2 155 67.1
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 7.1e-55 217.6 151 64.9
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 9.3e-55 217.2 155 65.2
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 2.7e-54 215.7 155 68.4
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 6.0e-54 214.5 153 67.3
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 7.9e-54 214.2 153 66.7
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 1.8e-53 213.0 154 63.6
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 2.3e-53 212.6 155 65.2
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.3e-53 212.6 156 64.1
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 1.1e-52 210.3 151 64.2
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 1.1e-52 210.3 155 63.2
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 5.6e-52 208.0 150 64.0
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 7.4e-52 207.6 151 62.3
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 7.4e-52 207.6 155 63.2
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 2.8e-51 205.7 157 62.4
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 3.7e-51 205.3 152 65.1
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 4.8e-51 204.9 155 61.9
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 4.8e-51 204.9 155 61.9
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 8.2e-51 204.1 152 65.8
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 8.2e-51 204.1 151 63.6
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 8.2e-51 204.1 151 62.3
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.1e-50 202.2 148 63.5
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 4.0e-50 201.8 146 64.4
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 5.3e-50 201.4 152 59.9
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 6.9e-50 201.1 151 64.2
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 6.9e-50 201.1 148 63.5
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 9.0e-50 200.7 148 62.2
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 9.0e-50 200.7 154 57.8
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 5.8e-49 198.0 155 61.3
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.8e-49 198.0 144 62.5
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 1.7e-48 196.4 152 62.5
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 2.2e-48 196.1 147 60.5
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 3.8e-48 195.3 150 58.7
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 8.4e-48 194.1 155 55.5
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 1.1e-47 193.7 158 60.8
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 2.5e-47 192.6 150 63.3
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 4.2e-47 191.8 158 58.2
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 5.5e-47 191.4 157 57.3
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 1.2e-46 190.3 156 57.1
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 1.6e-46 189.9 156 55.8
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 2.1e-46 189.5 160 58.8
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 2.7e-46 189.1 150 60.7
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 3.5e-46 188.7 154 55.2
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 4.6e-46 188.3 157 54.8
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 6.0e-46 188.0 152 62.5
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 6.0e-46 188.0 155 56.1
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 6.0e-46 188.0 154 55.2
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 7.9e-46 187.6 156 55.8
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 1.8e-45 186.4 155 55.5
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 3.0e-45 185.7 153 56.9
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 1.9e-44 183.0 155 52.3
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 1.6e-43 179.9 150 57.3
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 2.2e-43 179.5 150 56.7
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.2e-43 179.5 152 55.9
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 3.7e-43 178.7 158 53.2
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 6.3e-43 177.9 151 58.9
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 8.2e-43 177.6 150 55.3
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 4.1e-42 175.3 151 53.0
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 6.9e-42 174.5 150 56.0
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 2.6e-41 172.6 151 53.6
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 3.4e-41 172.2 139 57.6
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 4.5e-41 171.8 149 53.7
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 2.9e-40 169.1 155 53.5
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 6.5e-40 167.9 149 52.3
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 6.5e-40 167.9 149 52.3
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 1.1e-39 167.2 119 62.2
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 1.1e-39 167.2 144 54.9
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 1.4e-39 166.8 149 51.0
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 1.4e-39 166.8 149 51.0
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 1.4e-39 166.8 151 51.0
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 3.2e-39 165.6 152 58.6
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 4.2e-39 165.2 151 53.0
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 7.2e-39 164.5 151 51.0
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 7.2e-39 164.5 158 50.6
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 2.1e-38 162.9 157 52.2
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 3.0e-37 159.1 149 49.7
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 5.1e-37 158.3 150 48.0
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 6.7e-37 157.9 150 49.3
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 1.1e-36 157.1 122 65.6
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 4.3e-36 155.2 155 50.3
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.3e-35 153.7 152 50.7
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.7e-35 153.3 161 50.9
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 2.2e-35 152.9 161 50.9
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.7e-35 152.1 148 48.0
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 1.8e-34 149.8 163 46.0
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 4.1e-34 148.7 151 49.7
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 1.4e-31 140.2 147 43.5
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 9.4e-31 137.5 114 57.9
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 7.9e-30 134.4 158 48.1
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 2.0e-28 129.8 159 41.5
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 2.4e-26 122.9 153 44.4
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 4.1e-26 122.1 148 39.9
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 9.7e-20 100.9 145 37.9
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 3.2e-15 85.9 58 63.8
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 1.2e-12 77.4 131 35.1
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 5.7e-12 75.1 60 58.3
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 1.3e-11 73.9 150 29.3
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.1e-10 70.9 141 36.2
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 4.1e-10 68.9 111 37.8
PRCOL_00001098 Prasinoderma coloniale HOM05D007082 ORTHO05D008895 4.5e-09 65.5 165 30.9
TAR626G0658 Trochodendron aralioides HOM05D002728 ORTHO05D002874 8.5e-08 61.2 122 27.9
AL4G14970 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 1.5e-07 60.5 122 27.9
CAN.G308.33 Capsicum annuum HOM05D002728 ORTHO05D002874 1.5e-07 60.5 131 28.2
Sp4g03490 Schrenkiella parvula HOM05D002728 ORTHO05D002874 2.5e-07 59.7 138 26.1
BraA04t17490Z Brassica rapa HOM05D002728 ORTHO05D002874 3.2e-07 59.3 133 26.3
A04p18810 Brassica napus HOM05D002728 ORTHO05D002874 4.2e-07 58.9 133 26.3
Thhalv10000282m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 5.5e-07 58.5 122 27.0
BcaC02g08447 Brassica carinata HOM05D002728 ORTHO05D002874 9.4e-07 57.8 122 27.0
C04p54120 Brassica napus HOM05D002728 ORTHO05D002874 9.4e-07 57.8 122 27.0
BolC4t26964H Brassica oleracea HOM05D002728 ORTHO05D002874 9.4e-07 57.8 122 27.0
BcaB06g27981 Brassica carinata HOM05D002728 ORTHO05D002874 1.2e-06 57.4 122 27.0
Carub.0004s0383 Capsella rubella HOM05D002728 ORTHO05D002874 1.2e-06 57.4 122 27.9
DCAR_000664 Daucus carota HOM05D002728 ORTHO05D002874 1.2e-06 57.4 122 26.2
Actinidia17316 Actinidia chinensis HOM05D002728 ORTHO05D002874 1.6e-06 57.0 122 27.0
TAR383G0981 Trochodendron aralioides HOM05D002728 ORTHO05D002874 1.6e-06 57.0 122 27.0
Aa31LG7G11480 Aethionema arabicum HOM05D002728 ORTHO05D002874 3.6e-06 55.8 127 25.2
AT2G24490 Arabidopsis thaliana HOM05D002728 ORTHO05D002874 4.7e-06 55.5 122 26.2
MSTRG.6224 Avicennia marina HOM05D002728 ORTHO05D002874 4.7e-06 55.5 132 28.8
Rhsim07G0137300 Rhododendron simsii HOM05D002728 ORTHO05D002874 4.7e-06 55.5 122 27.9
Nitab4.5_0004944g0050 Nicotiana tabacum HOM05D002728 ORTHO05D002874 6.1e-06 55.1 122 24.6
Nitab4.5_0006838g0010 Nicotiana tabacum HOM05D002728 ORTHO05D002874 8.0e-06 54.7 122 24.6
PGSC0003DMG403013782 Solanum tuberosum HOM05D002728 ORTHO05D002874 8.0e-06 54.7 122 26.2


User provided reference genes

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