Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.5e-311 1071.2 528 100.0
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 1.4e-197 693.3 530 66.0
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 5.5e-186 654.8 533 62.9
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 2.0e-183 646.4 536 61.6
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 2.5e-178 629.4 531 59.1
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 7.2e-178 627.9 534 61.6
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 1.1e-173 614.0 531 57.3
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.3e-171 607.1 533 58.7
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 3.3e-170 602.4 544 56.8
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 4.4e-167 592.0 532 56.0
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 7.3e-162 574.7 531 54.2
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.2e-159 567.4 535 54.0
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.0e-159 566.6 535 53.5
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 5.8e-159 565.1 531 54.8
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.3e-158 563.9 531 55.7
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.3e-158 563.9 530 54.9
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.7e-158 563.5 536 54.5
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.9e-158 562.8 536 54.7
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.0e-155 554.3 546 53.1
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.9e-154 550.1 532 53.2
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 2.1e-153 546.6 533 51.6
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 6.8e-152 541.6 534 53.2
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 8.9e-152 541.2 539 50.8
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.4e-151 539.3 537 53.3
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 3.2e-149 532.7 539 51.6
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 4.1e-149 532.3 539 50.1
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 2.7e-148 529.6 539 49.7
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.3e-147 526.6 542 50.7
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 5.1e-147 525.4 539 51.4
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 6.6e-147 525.0 539 49.5
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 8.6e-147 524.6 534 51.5
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.5e-146 523.1 541 49.7
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.6e-145 520.4 536 50.2
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 2.1e-145 520.0 529 49.7
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 8.9e-144 514.6 529 49.5
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 3.4e-143 512.7 529 49.3
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 4.4e-143 512.3 539 48.6
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 2.9e-142 509.6 538 49.4
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 3.7e-142 509.2 534 50.2
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 4.9e-142 508.8 530 49.4
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 4.9e-142 508.8 535 49.5
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 2.4e-141 506.5 537 49.7
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 4.1e-141 505.8 534 50.2
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 5.4e-141 505.4 538 49.8
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.1e-141 505.0 537 50.1
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 9.2e-141 504.6 529 48.4
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.2e-140 504.2 545 49.4
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-140 504.2 529 48.4
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.6e-140 503.8 538 49.1
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 2.1e-140 503.4 538 49.4
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.1e-140 503.4 529 48.4
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.8e-140 501.5 527 48.4
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.7e-139 500.4 527 48.2
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 5.1e-139 498.8 545 47.7
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 5.6e-138 495.4 522 48.1
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.8e-136 490.3 538 48.9
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 4.0e-136 489.2 533 49.2
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 3.8e-134 482.6 536 48.7
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.4e-133 480.7 540 46.7
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 3.5e-132 476.1 541 47.5
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 3.5e-132 476.1 537 47.5
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 7.8e-132 474.9 532 46.6
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.0e-131 474.6 534 49.4
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 1.7e-131 473.8 533 46.9
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.1e-131 472.2 537 46.7
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 8.7e-131 471.5 530 47.0
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 3.3e-130 469.5 541 45.8
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 4.3e-130 469.2 549 46.4
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.8e-129 466.5 540 45.6
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 2.4e-128 463.4 558 45.0
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 2.6e-127 459.9 531 45.2
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.6e-124 450.7 528 45.6
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 2.7e-124 449.9 531 45.2
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 6.0e-124 448.7 522 47.3
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 3.9e-123 446.0 530 44.9
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 5.6e-122 442.2 458 48.7
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 7.3e-122 441.8 551 45.0
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 9.6e-122 441.4 548 45.1
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 2.1e-121 440.3 536 45.7
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 4.8e-121 439.1 535 44.7
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 8.1e-121 438.3 536 45.7
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.1e-120 436.4 511 47.4
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 4.0e-120 436.0 535 43.9
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 9.0e-120 434.9 506 50.2
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 7.1e-117 425.2 527 43.3
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.6e-116 424.1 590 42.5
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 6.0e-116 422.2 447 49.7
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 3.0e-115 419.9 539 43.8
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 8.7e-115 418.3 541 43.4
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.9e-114 417.2 535 42.6
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 2.9e-110 403.3 528 41.9
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 6.4e-110 402.1 524 42.7
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 8.4e-110 401.7 465 48.2
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 4.6e-108 396.0 536 42.2
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 4.6e-108 396.0 536 42.9
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.8e-107 394.0 521 41.7
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.8e-107 394.0 521 41.7
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.8e-107 394.0 521 41.7
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 2.3e-107 393.7 524 42.0
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 3.0e-107 393.3 523 41.7
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 2.9e-102 376.7 552 39.9
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 8.4e-102 375.2 426 48.4
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 1.4e-101 374.4 485 45.2
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 7.2e-85 318.9 294 52.4
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 8.8e-83 312.0 540 36.5
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.1e-80 305.1 333 49.8
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 5.3e-80 302.8 582 34.2
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 2.0e-79 300.8 282 51.4
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.6e-79 300.4 225 62.2
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.4e-75 288.1 284 50.0
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.4e-75 288.1 613 32.0
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.6e-63 248.1 412 37.1
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 2.5e-61 240.7 317 46.1
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 5.5e-61 239.6 325 42.8
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.6e-60 238.0 566 31.1
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.7e-57 228.0 554 30.9
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 4.9e-49 199.9 317 36.0
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 1.2e-44 185.3 197 42.6
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 8.0e-44 182.6 553 26.9
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 3.7e-41 173.7 297 36.4
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.0e-38 165.6 385 30.4
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 1.3e-38 165.2 304 32.6
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 2.6e-26 124.4 128 53.1
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 3.9e-22 110.5 105 46.7
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.5e-21 108.6 176 38.1
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 3.1e-19 100.9 285 27.7
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 2.6e-18 97.8 126 37.3
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 5.8e-18 96.7 244 33.2
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.7e-17 95.1 104 45.2
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 4.9e-17 93.6 95 40.0
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 1.6e-15 88.6 209 26.8
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.9e-13 81.6 143 39.2
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 3.3e-13 80.9 156 35.9
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.6e-13 79.3 89 39.3
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.8e-12 77.8 70 61.4
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.1e-12 76.3 182 30.2
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 8.1e-12 76.3 128 36.7
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-11 75.9 182 30.2
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-11 75.1 90 36.7
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 5.3e-11 73.6 59 49.2
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 1.2e-07 62.4 262 21.0
AagrBONN_evm.TU.Sc2ySwM_228.5644 Anthoceros agrestis HOM05D002702 ORTHO05D003416 2.7e-07 61.2 277 23.1
Nitab4.5_0001189g0060 Nicotiana tabacum HOM05D002338 ORTHO05D006102 2.7e-07 61.2 43 60.5
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 3.5e-07 60.8 278 22.3
ECA248G0012 Erigeron canadensis HOM05D001573 ORTHO05D001660 4.6e-07 60.5 298 22.8
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.6e-07 60.5 60 36.7
HanXRQChr13g0396441 Helianthus annuus HOM05D001573 ORTHO05D001660 6.0e-07 60.1 319 22.3
Cc06_g17760 Coffea canephora HOM05D001573 ORTHO05D001660 7.9e-07 59.7 298 23.2
HanXRQChr10g0283361 Helianthus annuus HOM05D001573 ORTHO05D001660 7.9e-07 59.7 319 22.3
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.3e-06 58.9 52 53.8
Solyc10g079360.3 Solanum lycopersicum HOM05D001573 ORTHO05D001660 1.3e-06 58.9 304 22.4
PGSC0003DMG401008136 Solanum tuberosum HOM05D001573 ORTHO05D001660 1.3e-06 58.9 304 22.4
PGR004G1049 Punica granatum HOM05D001573 ORTHO05D001660 1.7e-06 58.5 314 22.3
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.3e-06 58.2 61 42.6
Lsat_1_v5_gn_9_30840 Lactuca sativa HOM05D001573 ORTHO05D001660 2.3e-06 58.2 313 20.8
PGR083G2767 Punica granatum HOM05D001573 ORTHO05D001660 2.3e-06 58.2 314 20.4
Atru.chr1.1139 Acer truncatum HOM05D001573 ORTHO05D001660 3.0e-06 57.8 326 22.4
Cfa016793 Carpinus fangiana HOM05D001573 ORTHO05D001660 5.1e-06 57.0 319 21.6
CiPaw.09G039600 Carya illinoinensis HOM05D001573 ORTHO05D001660 5.1e-06 57.0 320 22.2
Glyma.03G134600 Glycine max HOM05D001573 ORTHO05D001660 5.1e-06 57.0 311 21.9
Sc19g0006610 Simmondsia chinensis HOM05D001573 ORTHO05D001660 5.1e-06 57.0 315 21.0
Haze_19822 Corylus avellana HOM05D001573 ORTHO05D001660 6.6e-06 56.6 319 21.6
TWI77G0498 Tripterygium wilfordii HOM05D001573 ORTHO05D001660 6.6e-06 56.6 315 22.5
FAN14G1453 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.7e-06 56.2 53 56.6
Gohir.A09G121600 Gossypium hirsutum HOM05D001573 ORTHO05D001660 8.7e-06 56.2 315 22.2
Gohir.D09G117700 Gossypium hirsutum HOM05D001573 ORTHO05D001660 8.7e-06 56.2 315 22.2
Gorai.006G136100 Gossypium raimondii HOM05D001573 ORTHO05D001660 8.7e-06 56.2 315 22.2
TWI53G1442 Tripterygium wilfordii HOM05D001573 ORTHO05D001660 8.7e-06 56.2 315 22.2


User provided reference genes

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