Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 8.4e-73 276.9 142 100.0
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.8e-65 251.5 136 94.1
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 5.9e-42 174.5 136 64.7
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.0e-41 173.7 105 86.7
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 2.5e-40 169.1 142 62.7
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 4.4e-37 158.3 132 60.6
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.3e-36 156.8 145 55.2
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.8e-35 152.9 138 58.0
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.2e-34 150.2 126 58.7
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 2.0e-34 149.4 150 52.7
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 2.0e-34 149.4 147 52.4
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 2.6e-34 149.1 141 55.3
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 3.5e-34 148.7 132 56.1
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 3.5e-34 148.7 150 55.3
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 5.9e-34 147.9 141 51.8
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 7.7e-34 147.5 148 54.7
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.0e-33 147.1 125 57.6
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.3e-33 146.7 142 55.6
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.7e-33 146.4 142 54.9
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 2.9e-33 145.6 141 53.9
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 5.0e-33 144.8 120 61.7
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 6.5e-33 144.4 135 54.1
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 8.5e-33 144.1 133 57.1
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 8.5e-33 144.1 139 55.4
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.5e-32 143.3 140 52.9
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.5e-32 143.3 146 52.1
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 3.2e-32 142.1 141 53.9
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 4.2e-32 141.7 140 52.1
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.2e-31 140.2 144 49.3
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 1.2e-31 140.2 142 52.8
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 1.2e-31 140.2 139 55.4
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.6e-31 139.8 139 54.7
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.6e-31 139.8 139 56.1
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 1.6e-31 139.8 141 50.4
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.1e-31 139.4 141 51.1
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 2.1e-31 139.4 129 52.7
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 3.6e-31 138.7 123 55.3
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 3.6e-31 138.7 147 49.0
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 3.6e-31 138.7 129 55.0
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 3.6e-31 138.7 144 53.5
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 4.7e-31 138.3 141 51.1
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 8.0e-31 137.5 140 55.0
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 1.0e-30 137.1 124 54.8
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.0e-30 137.1 139 50.4
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 1.4e-30 136.7 143 49.7
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.3e-30 136.0 141 50.4
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 3.0e-30 135.6 115 60.9
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 3.0e-30 135.6 147 48.3
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 3.0e-30 135.6 140 46.4
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 4.0e-30 135.2 137 51.8
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 4.0e-30 135.2 131 52.7
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 5.2e-30 134.8 135 51.9
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 6.7e-30 134.4 139 51.1
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 6.7e-30 134.4 125 52.8
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.2e-29 133.7 134 52.2
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.5e-29 133.3 120 59.2
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 2.0e-29 132.9 143 48.3
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 2.0e-29 132.9 120 53.3
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 3.3e-29 132.1 141 48.2
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 3.3e-29 132.1 138 52.9
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 3.3e-29 132.1 137 51.1
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 5.7e-29 131.3 138 50.0
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 7.5e-29 131.0 126 51.6
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 9.7e-29 130.6 143 51.7
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.7e-28 129.8 145 49.7
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.8e-28 129.0 143 46.9
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 2.8e-28 129.0 140 52.9
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 3.7e-28 128.6 137 48.2
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 8.2e-28 127.5 139 48.2
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 8.2e-28 127.5 139 49.6
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.4e-27 126.7 141 48.2
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.8e-27 126.3 143 46.2
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 2.4e-27 125.9 92 64.1
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.4e-27 125.9 146 47.9
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 3.1e-27 125.6 139 50.4
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 3.1e-27 125.6 138 48.6
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 9.1e-27 124.0 156 43.6
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-26 123.6 136 48.5
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.2e-26 123.6 144 50.0
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.6e-26 123.2 142 49.3
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.6e-26 123.2 127 53.5
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.0e-26 122.9 142 49.3
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.0e-26 122.9 142 49.3
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 2.7e-26 122.5 142 50.7
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 2.7e-26 122.5 141 49.6
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 2.7e-26 122.5 141 49.6
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 3.5e-26 122.1 130 48.5
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 5.9e-26 121.3 141 44.0
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 7.7e-26 120.9 141 44.7
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 7.7e-26 120.9 138 50.7
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.3e-25 120.2 138 50.0
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.3e-25 120.2 138 50.0
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 1.3e-25 120.2 141 47.5
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.7e-25 119.8 138 49.3
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.7e-25 119.8 131 46.6
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.7e-25 119.8 140 51.4
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 2.2e-25 119.4 143 49.0
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 2.9e-25 119.0 142 44.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 2.9e-25 119.0 140 45.7
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 8.5e-25 117.5 88 63.6
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.5e-24 116.7 125 45.6
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 1.9e-24 116.3 139 46.0
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 3.2e-24 115.5 138 46.4
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 3.2e-24 115.5 139 46.0
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 4.2e-24 115.2 138 47.1
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 4.2e-24 115.2 138 47.1
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 4.2e-24 115.2 138 47.1
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 7.2e-24 114.4 89 62.9
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.6e-23 113.2 149 43.0
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.6e-23 113.2 149 43.0
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 2.1e-23 112.8 155 40.0
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.4e-22 110.2 142 42.3
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.8e-22 109.8 121 45.5
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.8e-22 109.8 137 46.0
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.2e-21 107.1 132 43.2
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.2e-21 107.1 132 43.2
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.5e-21 106.7 83 61.4
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 3.4e-21 105.5 92 54.3
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 4.4e-21 105.1 122 47.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.7e-21 104.8 132 47.0
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 7.5e-21 104.4 121 43.8
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 7.5e-21 104.4 121 42.1
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 7.5e-21 104.4 121 42.1
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.5e-21 104.4 89 56.2
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 3.7e-20 102.1 92 52.2
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 4.8e-20 101.7 120 46.7
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 8.3e-20 100.9 100 48.0
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 8.3e-20 100.9 139 41.7
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-19 100.5 138 42.8
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 4.1e-19 98.6 75 62.7
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 4.1e-19 98.6 139 39.6
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 2.7e-18 95.9 156 39.7
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 4.5e-18 95.1 141 41.1
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 5.9e-18 94.7 92 51.1
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 1.3e-17 93.6 119 42.9
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.7e-17 93.2 125 40.8
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 6.5e-17 91.3 141 39.7
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 7.2e-16 87.8 138 39.9
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 2.1e-15 86.3 120 43.3
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.7e-15 85.1 93 48.4
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.8e-14 83.2 110 41.8
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 5.2e-14 81.6 43 100.0
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 3.4e-13 79.0 91 46.2
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 7.5e-13 77.8 66 54.5
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 4.1e-11 72.0 92 42.4
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 7.0e-11 71.2 61 54.1
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.7e-10 69.3 139 32.4
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 4.5e-10 68.6 90 44.4
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.0e-09 67.4 83 39.8
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.5e-08 63.5 52 57.7
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 2.5e-08 62.8 71 45.1
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 3.3e-08 62.4 138 31.9
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 5.6e-08 61.6 96 38.5
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.2e-07 60.5 78 39.7
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.1e-07 59.7 133 36.1


User provided reference genes

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