Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 4.5e-205 717.6 346 100.0
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 3.6e-194 681.4 346 93.1
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 4.6e-149 531.6 362 71.3
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 4.6e-149 531.6 355 70.1
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 5.1e-148 528.1 359 70.5
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.9e-147 526.2 364 69.0
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.6e-146 523.1 356 70.2
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.4e-145 520.0 362 69.9
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 2.4e-145 519.2 348 71.6
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 2.7e-141 505.8 354 68.6
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 3.5e-141 505.4 365 68.8
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 3.5e-141 505.4 362 68.5
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 4.6e-141 505.0 362 68.2
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 5.1e-140 501.5 358 68.7
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 8.7e-140 500.7 367 67.6
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 1.1e-139 500.4 361 67.6
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.9e-139 499.6 354 68.4
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 4.3e-139 498.4 364 65.9
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 2.4e-137 492.7 358 67.0
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.2e-136 490.3 354 67.2
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.7e-135 486.5 360 66.7
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 5.0e-135 485.0 357 66.4
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 6.5e-135 484.6 356 67.1
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 8.5e-135 484.2 359 66.0
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.1e-134 483.8 355 66.2
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.4e-134 483.4 362 63.5
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.9e-134 483.0 362 64.9
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.5e-134 482.6 359 65.2
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 2.5e-134 482.6 365 63.8
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 4.2e-134 481.9 363 64.5
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 4.2e-134 481.9 363 64.7
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.2e-133 480.3 355 64.8
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 2.1e-133 479.6 353 65.4
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 7.9e-133 477.6 362 64.4
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 1.4e-132 476.9 350 65.7
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 1.8e-132 476.5 365 63.6
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.3e-132 476.1 342 67.0
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 3.0e-132 475.7 357 61.3
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.9e-132 475.3 350 65.7
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 5.1e-132 474.9 359 68.8
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 5.1e-132 474.9 356 66.3
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 8.8e-132 474.2 355 65.1
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.1e-131 473.8 359 65.5
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.5e-131 473.4 347 66.3
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.5e-131 473.4 355 64.8
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 1.9e-131 473.0 357 64.1
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 1.3e-130 470.3 366 63.1
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.3e-130 470.3 355 64.8
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 6.3e-130 468.0 328 68.6
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 3.1e-129 465.7 367 62.1
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 9.1e-129 464.2 353 62.0
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 2.0e-128 463.0 372 60.8
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 1.0e-127 460.7 428 55.8
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 6.5e-127 458.0 340 65.9
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.1e-126 457.2 359 64.3
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.6e-125 453.4 348 62.9
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.6e-125 453.4 348 62.9
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 7.9e-125 451.1 359 63.8
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.0e-124 450.7 404 56.9
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 1.8e-124 449.9 355 61.7
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 6.7e-124 448.0 355 61.7
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 8.8e-124 447.6 355 62.0
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.1e-123 447.2 353 64.3
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 2.0e-123 446.4 352 60.8
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 3.3e-123 445.7 355 60.8
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 4.4e-123 445.3 354 61.6
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 5.7e-123 444.9 356 60.7
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 7.4e-123 444.5 356 61.8
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 7.4e-123 444.5 356 61.2
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 3.7e-122 442.2 350 62.0
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 4.8e-122 441.8 356 60.7
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 6.3e-122 441.4 355 61.1
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 8.2e-122 441.0 356 60.4
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.1e-121 440.7 482 51.2
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.4e-121 440.3 351 62.4
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 6.9e-121 438.0 351 62.4
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.2e-120 437.2 356 61.2
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.2e-120 437.2 356 60.1
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.2e-120 437.2 356 60.1
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 7.7e-120 434.5 355 60.6
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 2.2e-119 433.0 353 60.6
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 2.9e-119 432.6 358 60.6
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 5.0e-119 431.8 424 52.8
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 8.5e-119 431.0 353 60.9
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.4e-118 430.3 357 60.5
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 1.9e-118 429.9 356 59.8
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 5.5e-118 428.3 354 58.2
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.0e-116 424.1 323 66.3
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.4e-116 423.7 354 60.7
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.8e-116 423.3 354 60.7
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 4.8e-114 415.2 309 64.1
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.4e-113 412.9 355 60.0
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 9.1e-113 411.0 351 58.7
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.0e-112 409.8 398 54.3
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.1e-110 404.1 344 59.6
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 6.7e-108 394.8 340 55.9
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 8.8e-108 394.4 241 76.3
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 3.3e-107 392.5 355 56.1
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 9.7e-107 391.0 283 64.7
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 2.2e-103 379.8 346 57.2
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.2e-101 374.0 355 53.0
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 2.1e-101 373.2 380 50.0
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.7e-98 363.6 350 54.0
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 3.8e-95 352.4 351 54.1
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 7.2e-94 348.2 323 56.0
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.8e-92 341.7 244 66.8
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.4e-89 334.0 300 58.3
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 3.1e-89 332.8 419 43.9
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 2.8e-85 319.7 199 75.4
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 3.4e-83 312.8 280 56.8
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.3e-82 310.8 175 79.4
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.7e-79 300.4 399 41.9
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 7.3e-78 295.0 154 85.1
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 7.3e-78 295.0 375 41.9
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 5.2e-76 288.9 354 44.4
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 1.7e-74 283.9 358 45.5
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 6.4e-74 282.0 221 62.9
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 1.0e-63 248.1 134 84.3
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.3e-62 243.0 125 85.6
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 5.6e-54 215.7 265 44.5
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 5.6e-54 215.7 265 44.5
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.5e-46 191.0 160 61.9
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 6.0e-40 169.1 124 58.1
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.9e-38 164.1 203 44.8
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 3.3e-38 163.3 203 44.8
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 3.7e-37 159.8 83 85.5
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 7.1e-33 145.6 211 42.7
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 4.8e-29 132.9 77 80.5
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 3.4e-27 126.7 120 53.3
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.0e-23 113.6 131 49.6
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 5.3e-20 102.8 218 33.5
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.4e-19 100.1 123 49.6
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.4e-12 77.4 101 50.5


User provided reference genes

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