Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0077100 Salix brachista HOM05D000165 ORTHO05D349064 9.9e-39 162.9 79 100.0
Potri.017G087300 Populus trichocarpa HOM05D000165 ORTHO05D005214 4.2e-13 77.8 42 88.1
Aqoxy3G03480 Aquilegia oxysepala HOM05D000165 ORTHO05D005214 6.7e-11 70.5 41 80.5
COL.COLO4_10352 Corchorus olitorius HOM05D000165 ORTHO05D005214 6.7e-11 70.5 41 80.5
Nn3g17320 Nelumbo nucifera HOM05D000165 ORTHO05D005214 6.7e-11 70.5 41 80.5
Potri.004G128820 Populus trichocarpa HOM05D000165 ORTHO05D005214 6.7e-11 70.5 41 80.5
Thecc.04G087200 Theobroma cacao HOM05D000165 ORTHO05D005214 6.7e-11 70.5 41 80.5
TAR374G0940 Trochodendron aralioides HOM05D000165 ORTHO05D005214 6.7e-11 70.5 41 80.5
GSVIVG01011459001 Vitis vinifera HOM05D000165 ORTHO05D005214 6.7e-11 70.5 41 80.5
Cpa.g.sc14.109 Carica papaya HOM05D000165 ORTHO05D005214 8.7e-11 70.1 41 80.5
Sabra04G0090900 Salix brachista HOM05D000165 ORTHO05D005214 1.1e-10 69.7 41 78.0
Dinv33785 Davidia involucrata HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
Duzib147G0453 Durio zibethinus HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
FvH4_6g48010 Fragaria vesca HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
FAN02G1035 Fragaria x ananassa HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
FAN05G2547 Fragaria x ananassa HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
FAN09G4544 Fragaria x ananassa HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
FAN14G1129 Fragaria x ananassa HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
Glyma.09G234800 Glycine max HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
Glyma.18G262500 Glycine max HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
Gohir.A09G013400 Gossypium hirsutum HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
Gorai.006G014000 Gossypium raimondii HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
HanXRQChr09g0264271 Helianthus annuus HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
Lj1g0002077 Lotus japonicus HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
Lalb_Chr10g0093341 Lupinus albus HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
MD17G1053000 Malus domestica HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
Peaxi162Scf00247g00320 Petunia axillaris HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
RcHm_v2.0_Chr2g0167301 Rosa chinensis HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
Solyc11g070175.1 Solanum lycopersicum HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
Sopen11g028850 Solanum pennellii HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
Sopen11g028860 Solanum pennellii HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
PGSC0003DMG400018560 Solanum tuberosum HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
TWI60G1084 Tripterygium wilfordii HOM05D000165 ORTHO05D005214 1.5e-10 69.3 41 78.0
CiPaw.03G023800 Carya illinoinensis HOM05D000165 ORTHO05D005214 1.9e-10 68.9 41 78.0
Cc05_g02490 Coffea canephora HOM05D000165 ORTHO05D005214 1.9e-10 68.9 41 75.6
Lj4A113T66 Lonicera japonica HOM05D000165 ORTHO05D005214 1.9e-10 68.9 41 78.0
Lalb_Chr17g0337191 Lupinus albus HOM05D000165 ORTHO05D005214 1.9e-10 68.9 41 78.0
MD09G1054900 Malus domestica HOM05D000165 ORTHO05D005214 1.9e-10 68.9 41 78.0
Nitab4.5_0000664g0150 Nicotiana tabacum HOM05D000165 ORTHO05D005214 1.9e-10 68.9 41 78.0
AL5G18980 Arabidopsis lyrata HOM05D000165 ORTHO05D005214 2.5e-10 68.6 41 78.0
AT3G29090 Arabidopsis thaliana HOM05D000165 ORTHO05D005214 2.5e-10 68.6 41 78.0
Carub.0005s0782 Capsella rubella HOM05D000165 ORTHO05D005214 2.5e-10 68.6 41 78.0
CARHR152290 Cardamine hirsuta HOM05D000165 ORTHO05D005214 2.5e-10 68.6 41 78.0
MBI02_g14227_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D005214 2.5e-10 68.6 41 78.0
PGR083G2318 Punica granatum HOM05D000165 ORTHO05D005214 2.5e-10 68.6 41 78.0
QL02p084804 Quercus lobata HOM05D000165 ORTHO05D005214 2.5e-10 68.6 41 78.0
Rhsim08G0071500 Rhododendron simsii HOM05D000165 ORTHO05D005214 2.5e-10 68.6 41 75.6
Sp2g17730 Schrenkiella parvula HOM05D000165 ORTHO05D005214 2.5e-10 68.6 41 78.0
TAR622G0048 Trochodendron aralioides HOM05D000165 ORTHO05D005214 2.5e-10 68.6 41 78.0
vmacro18176 Vaccinium macrocarpon HOM05D000165 ORTHO05D005214 2.5e-10 68.6 41 75.6
MSTRG.15468 Avicennia marina HOM05D000165 ORTHO05D005214 3.3e-10 68.2 41 75.6
CSS0008500 Camellia sinensis var. sinensis HOM05D000165 ORTHO05D005214 3.3e-10 68.2 41 75.6
CAN.G309.67 Capsicum annuum HOM05D000165 ORTHO05D005214 3.3e-10 68.2 41 75.6
CANSAT64G1098 Cannabis sativa HOM05D000165 ORTHO05D005214 4.3e-10 67.8 41 75.6
DCAR_011080 Daucus carota HOM05D000165 ORTHO05D005214 4.3e-10 67.8 41 75.6
Eucgr.G02070 Eucalyptus grandis HOM05D000165 ORTHO05D005214 4.3e-10 67.8 41 75.6
Manes.02G048600 Manihot esculenta HOM05D000165 ORTHO05D005214 4.3e-10 67.8 41 75.6
Nitab4.5_0001567g0200 Nicotiana tabacum HOM05D000165 ORTHO05D005214 4.3e-10 67.8 41 75.6
Aa31LG2G4110 Aethionema arabicum HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
Ah.10g031810 Amaranthus hybridus HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
arahy.Tifrunner.gnm1.ann1.TQY8C4 Arachis hypogaea HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
arahy.Tifrunner.gnm1.ann1.W8HEIJ Arachis hypogaea HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
BcaC06g30879 Brassica carinata HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
A06p40140 Brassica napus HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
BolC7t44321H Brassica oleracea HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
BraA06t26929Z Brassica rapa HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
CDE07G1086 Ceratophyllum demersum HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
AUR62034444 Chenopodium quinoa HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
ClCG09G017990 Citrullus lanatus HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 5.6e-10 67.4 41 75.6
Migut.H00678 Erythranthe guttata HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
Thhalv10005724m.g Eutrema salsugineum HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
Gohir.D09G012000 Gossypium hirsutum HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
Lj2g0001368 Lotus japonicus HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
Lj2g0010444 Lotus japonicus HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
HPP92_016018 Vanilla planifolia HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
VMungo1383G2647 Vigna mungo HOM05D000165 ORTHO05D005214 5.6e-10 67.4 41 75.6
Ca_06792_v3 Cicer arietinum L. HOM05D000165 ORTHO05D005214 7.4e-10 67.0 41 75.6
MELO3C001494.2 Cucumis melo HOM05D000165 ORTHO05D005214 7.4e-10 67.0 41 73.2
MELO3C022008.2 Cucumis melo HOM05D000165 ORTHO05D005214 7.4e-10 67.0 41 73.2
CsaV3_5G038240 Cucumis sativus L. HOM05D000165 ORTHO05D005214 7.4e-10 67.0 41 73.2
Psat3g199480 Pisum sativum HOM05D000165 ORTHO05D005214 7.4e-10 67.0 41 73.2
TPR.G25561 Trifolium pratense HOM05D000165 ORTHO05D005214 7.4e-10 67.0 41 75.6
TPR.G25565 Trifolium pratense HOM05D000165 ORTHO05D005214 7.4e-10 67.0 41 75.6
BcaB07g30097 Brassica carinata HOM05D000165 ORTHO05D005214 9.6e-10 66.6 41 75.6
BcaC03g17551 Brassica carinata HOM05D000165 ORTHO05D005214 9.6e-10 66.6 41 75.6
A02p36330 Brassica napus HOM05D000165 ORTHO05D005214 9.6e-10 66.6 41 75.6
C02p55300 Brassica napus HOM05D000165 ORTHO05D005214 9.6e-10 66.6 41 75.6
BraA02t08632Z Brassica rapa HOM05D000165 ORTHO05D005214 9.6e-10 66.6 41 75.6
Ciclev10012239m.g Citrus clementina HOM05D000165 ORTHO05D005214 9.6e-10 66.6 41 73.2
Medtr7g011530 Medicago truncatula HOM05D000165 ORTHO05D005214 9.6e-10 66.6 41 75.6
Os10g0407000 Oryza sativa ssp. japonica HOM05D000165 ORTHO05D005214 9.6e-10 66.6 40 77.5
THA.LOC104805484 Tarenaya hassleriana HOM05D000165 ORTHO05D005214 9.6e-10 66.6 41 75.6
EL10Ac2g03018 Beta vulgaris HOM05D000165 ORTHO05D005214 1.3e-09 66.2 41 73.2
BcaC04g23847 Brassica carinata HOM05D000165 ORTHO05D005214 1.3e-09 66.2 41 75.6
BcaC06g33670 Brassica carinata HOM05D000165 ORTHO05D005214 1.3e-09 66.2 41 73.2
A09p03970 Brassica napus HOM05D000165 ORTHO05D005214 1.3e-09 66.2 41 75.6
C07p38000 Brassica napus HOM05D000165 ORTHO05D005214 1.3e-09 66.2 41 73.2
C09p04190 Brassica napus HOM05D000165 ORTHO05D005214 1.3e-09 66.2 41 75.6
BolC9t53350H Brassica oleracea HOM05D000165 ORTHO05D005214 1.3e-09 66.2 41 75.6
BraA09t36034Z Brassica rapa HOM05D000165 ORTHO05D005214 1.3e-09 66.2 41 75.6
Cfa007587 Carpinus fangiana HOM05D000165 ORTHO05D005214 1.6e-09 65.9 41 73.2
Haze_14500 Corylus avellana HOM05D000165 ORTHO05D005214 1.6e-09 65.9 41 73.2
Duzib264G1179 Durio zibethinus HOM05D000165 ORTHO05D005214 1.6e-09 65.9 41 75.6
SGA_v2.0_scaffold4G02432 Striga asiatica HOM05D000165 ORTHO05D005214 1.6e-09 65.9 41 73.2
Medtr6g012800 Medicago truncatula HOM05D000165 ORTHO05D005214 2.1e-09 65.5 46 69.6
SalBow1G2428 Salvia bowleyana HOM05D000165 ORTHO05D005214 2.1e-09 65.5 41 70.7
Atru.chr8.320 Acer truncatum HOM05D000165 ORTHO05D005214 2.8e-09 65.1 41 70.7
Glyma.13G060900 Glycine max HOM05D000165 ORTHO05D005214 2.8e-09 65.1 41 73.2
Psat1g070840 Pisum sativum HOM05D000165 ORTHO05D005214 2.8e-09 65.1 41 73.2
Prupe.3G263600 Prunus persica HOM05D000165 ORTHO05D005214 2.8e-09 65.1 41 73.2
TPR.G26195 Trifolium pratense HOM05D000165 ORTHO05D005214 2.8e-09 65.1 41 73.2
AUR62018110 Chenopodium quinoa HOM05D000165 ORTHO05D005214 3.7e-09 64.7 41 73.2
Phvul.008G039000 Phaseolus vulgaris HOM05D000165 ORTHO05D005214 3.7e-09 64.7 41 73.2
unitig_37.g12564 Utricularia gibba HOM05D000165 ORTHO05D005214 3.7e-09 64.7 41 70.7
ATR0564G291 Amborella trichopoda HOM05D000165 ORTHO05D005214 4.8e-09 64.3 41 70.7
ECA246G1625 Erigeron canadensis HOM05D000165 ORTHO05D005214 4.8e-09 64.3 41 73.2
Lalb_Chr06g0175221 Lupinus albus HOM05D000165 ORTHO05D005214 4.8e-09 64.3 41 70.7
Sed0003404 Sechium edule HOM05D000165 ORTHO05D005214 4.8e-09 64.3 41 70.7
Zm00001eb048310 Zea mays HOM05D000165 ORTHO05D005214 4.8e-09 64.3 40 70.0
BcaB04g19503 Brassica carinata HOM05D000165 ORTHO05D005214 6.2e-09 63.9 41 73.2
arahy.Tifrunner.gnm1.ann1.AH6AD5 Arachis hypogaea HOM05D000165 ORTHO05D005214 8.1e-09 63.5 41 70.7
arahy.Tifrunner.gnm1.ann1.AR1S26 Arachis hypogaea HOM05D000165 ORTHO05D005214 8.1e-09 63.5 41 70.7
Ca_04852_v3 Cicer arietinum L. HOM05D000165 ORTHO05D005214 8.1e-09 63.5 41 70.7
Lsat_1_v5_gn_3_99700 Lactuca sativa HOM05D000165 ORTHO05D005214 1.1e-08 63.2 41 70.7
Sc14g0005850 Simmondsia chinensis HOM05D000165 ORTHO05D005214 1.8e-08 62.4 41 68.3
SMO367G0423 Selaginella moellendorffii HOM05D000165 ORTHO05D005214 2.4e-08 62.0 63 50.8
Mapoly0103s0067 Marchantia polymorpha HOM05D000165 ORTHO05D005214 4.0e-08 61.2 41 65.9
PSO063G6373 Papaver somniferum HOM05D000165 ORTHO05D005214 5.3e-08 60.8 41 65.9
PSO198G0103 Papaver somniferum HOM05D000165 ORTHO05D005214 5.3e-08 60.8 41 65.9
PSO063G0023 Papaver somniferum HOM05D000165 ORTHO05D005214 6.9e-08 60.5 41 65.9
Zm00001eb402370 Zea mays HOM05D000165 ORTHO05D005214 6.9e-08 60.5 40 70.0
RcHm_v2.0_Chr2g0092931 Rosa chinensis HOM05D000165 ORTHO05D005214 2.0e-07 58.9 41 63.4
SEGI_29500 Sequoiadendron giganteum HOM05D000165 ORTHO05D005214 2.0e-07 58.9 41 61.0
Manes.02G048560 Manihot esculenta HOM05D000165 ORTHO05D005214 4.5e-07 57.8 41 61.0
FvH4_1g06980 Fragaria vesca HOM05D000165 ORTHO05D005214 7.6e-07 57.0 41 61.0
FAN23G1046 Fragaria x ananassa HOM05D000165 ORTHO05D005214 7.6e-07 57.0 41 61.0
FAN26G0483 Fragaria x ananassa HOM05D000165 ORTHO05D005214 7.6e-07 57.0 41 61.0
Lsat_1_v5_gn_4_169720 Lactuca sativa HOM05D000165 ORTHO05D005214 7.6e-07 57.0 41 63.4
SEGI_00503 Sequoiadendron giganteum HOM05D000165 ORTHO05D005214 7.6e-07 57.0 41 58.5
Pp3c25_15080 Physcomitrium patens HOM05D000165 ORTHO05D005214 9.9e-07 56.6 41 63.4
Sed0020669 Sechium edule HOM05D000165 ORTHO05D005214 1.3e-06 56.2 41 58.5
FAN19G0325 Fragaria x ananassa HOM05D000165 ORTHO05D005214 2.2e-06 55.5 41 61.0
FAN28G2462 Fragaria x ananassa HOM05D000165 ORTHO05D005214 3.8e-06 54.7 41 58.5
AagrBONN_evm.TU.Sc2ySwM_344.687 Anthoceros agrestis HOM05D000165 ORTHO05D005214 8.4e-06 53.5 46 52.2
Glyma.19G025500 Glycine max HOM05D000165 ORTHO05D005214 8.4e-06 53.5 41 65.9


User provided reference genes

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