Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 7.3e-159 563.9 302 100.0
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 2.4e-154 548.9 304 96.4
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 2.3e-136 489.2 302 84.8
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 7.4e-135 484.2 302 84.8
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 9.6e-135 483.8 304 83.2
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 2.1e-134 482.6 302 83.1
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.8e-134 482.3 304 84.5
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.8e-134 482.3 304 84.5
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 3.7e-134 481.9 304 83.9
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 8.2e-134 480.7 304 83.6
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.4e-133 479.9 302 85.4
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.4e-133 479.2 304 83.6
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.4e-133 479.2 304 83.6
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 3.1e-133 478.8 304 84.5
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 5.3e-133 478.0 308 83.8
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 9.0e-133 477.2 302 83.8
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.5e-132 474.9 304 82.9
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.8e-132 474.6 304 83.2
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 7.6e-132 474.2 303 82.5
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 2.2e-131 472.6 303 81.5
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 2.2e-131 472.6 304 82.2
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 2.9e-131 472.2 306 84.3
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 3.8e-131 471.9 304 84.2
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 3.8e-131 471.9 302 84.1
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 6.5e-131 471.1 312 79.2
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.1e-130 470.3 306 80.4
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.1e-130 470.3 302 80.8
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.1e-130 470.3 302 80.5
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.4e-130 469.9 302 82.8
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 1.4e-130 469.9 304 80.6
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.2e-129 466.8 306 80.1
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.7e-129 465.7 302 81.5
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 2.7e-129 465.7 305 80.3
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.7e-129 465.7 300 82.7
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.7e-129 465.7 302 82.5
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 3.5e-129 465.3 300 81.0
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 3.5e-129 465.3 302 80.5
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.0e-128 463.8 304 80.3
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.3e-128 463.4 300 80.3
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 1.8e-128 463.0 302 78.5
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 1.8e-128 463.0 302 80.1
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 3.9e-128 461.8 302 81.8
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 8.7e-128 460.7 303 80.5
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 2.5e-127 459.1 304 79.3
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 5.7e-127 458.0 305 78.0
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 9.7e-127 457.2 300 78.0
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.6e-126 456.4 305 81.0
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.6e-126 456.4 302 81.8
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 3.7e-126 455.3 305 79.7
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 6.3e-126 454.5 304 79.9
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.1e-125 453.8 305 80.3
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 2.4e-125 452.6 309 77.7
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.4e-125 452.6 305 80.3
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 2.4e-125 452.6 302 80.1
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 4.1e-125 451.8 304 81.2
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 4.1e-125 451.8 302 76.5
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 5.3e-125 451.4 307 75.6
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 9.0e-125 450.7 302 80.8
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 9.0e-125 450.7 306 79.1
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 9.0e-125 450.7 306 79.1
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 9.0e-125 450.7 306 79.1
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.5e-124 449.9 302 80.5
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.5e-124 449.9 304 78.3
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.5e-124 449.9 300 76.7
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 2.0e-124 449.5 302 80.1
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 2.6e-124 449.1 302 78.5
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 2.6e-124 449.1 305 77.4
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 3.4e-124 448.7 302 80.8
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 4.5e-124 448.4 302 76.8
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 5.9e-124 448.0 302 76.5
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 7.7e-124 447.6 302 80.8
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 7.7e-124 447.6 300 81.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.0e-123 447.2 302 76.8
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.3e-123 446.8 302 78.5
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.7e-123 446.4 304 79.6
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 2.2e-123 446.0 305 76.4
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 2.9e-123 445.7 302 79.8
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 3.8e-123 445.3 302 80.1
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 3.8e-123 445.3 302 80.1
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 3.8e-123 445.3 302 80.1
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 5.0e-123 444.9 302 80.5
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 5.0e-123 444.9 302 79.8
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 6.5e-123 444.5 300 79.0
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 6.5e-123 444.5 305 76.4
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 6.5e-123 444.5 302 79.8
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 8.5e-123 444.1 304 80.6
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.1e-122 443.7 304 77.3
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.4e-122 443.4 302 79.8
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 7.2e-122 441.0 305 78.4
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 9.4e-122 440.7 302 79.5
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.6e-121 439.9 305 78.4
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.6e-121 439.9 305 78.4
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.1e-121 439.5 303 78.5
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 4.6e-121 438.3 302 75.5
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.0e-120 437.2 302 79.5
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.8e-120 436.4 305 78.0
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 75.7
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 1.5e-119 433.3 285 79.6
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 5.7e-119 431.4 296 76.0
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 2.2e-118 429.5 302 75.2
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 3.7e-118 428.7 302 75.8
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 6.3e-118 427.9 305 74.8
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 8.2e-118 427.6 304 78.0
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.0e-116 422.9 302 76.5
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 5.9e-116 421.4 304 73.4
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.0e-115 420.6 299 75.3
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.2e-115 419.5 302 75.5
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 1.4e-114 416.8 304 72.4
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.9e-113 411.0 280 80.0
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 3.7e-110 402.1 303 73.6
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 3.7e-110 402.1 312 71.5
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 3.5e-108 395.6 302 68.5
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 2.1e-105 386.3 309 69.3
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 6.1e-105 384.8 299 68.9
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.3e-102 377.1 302 63.9
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 2.5e-98 362.8 293 70.6
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 8.8e-96 354.4 319 62.7
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 9.4e-90 334.3 195 82.1
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.6e-89 333.6 308 57.8
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.6e-84 317.0 252 67.9
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.9e-82 310.1 302 59.3
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.2e-81 307.4 252 65.9
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 2.8e-81 306.2 298 56.4
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 8.0e-81 304.7 303 56.1
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 9.2e-77 291.2 303 57.1
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 5.4e-69 265.4 301 52.2
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.3e-67 260.8 134 94.0
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 6.4e-62 241.9 199 68.3
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.5e-55 220.7 271 52.8
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 1.5e-55 220.7 193 66.8
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 6.4e-54 215.3 204 62.7
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 3.5e-52 209.5 309 46.0
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.7e-51 207.2 195 61.5
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.1e-50 204.5 293 45.7
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.9e-46 189.9 193 56.5
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 6.0e-44 182.2 166 68.7
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 6.2e-41 172.2 199 48.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 3.1e-40 169.9 111 78.4
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 6.9e-40 168.7 230 45.7
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 6.4e-38 162.2 269 48.7
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 1.9e-37 160.6 104 74.0
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 4.5e-31 139.4 175 48.0
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.9e-30 136.7 102 65.7
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.6e-25 120.9 147 53.7
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.8e-24 117.5 302 35.1
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 4.0e-24 116.3 302 34.8
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 6.5e-22 109.0 77 68.8
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 3.2e-21 106.7 77 66.2
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 5.5e-21 105.9 61 80.3
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 6.7e-19 99.0 68 70.6
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 5.3e-16 89.4 144 45.1
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.2e-14 84.0 117 52.1
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 5.0e-14 82.8 117 56.4
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 3.9e-11 73.2 52 76.9
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 5.1e-11 72.8 97 51.5
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 1.9e-10 70.9 97 53.6
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 2.9e-06 57.0 78 44.9


User provided reference genes

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