Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 5.2e-169 598.2 447 100.0
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 5.1e-132 475.3 383 79.4
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.8e-113 413.7 374 73.0
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 8.4e-103 378.3 327 80.1
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 4.2e-94 349.4 327 63.6
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 5.1e-92 342.4 389 67.1
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 1.1e-91 341.3 386 61.9
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 5.3e-89 332.4 376 55.1
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.0e-88 330.5 373 56.3
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 2.9e-87 326.6 388 54.9
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.0e-87 325.9 381 58.5
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 1.1e-86 324.7 375 64.3
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 1.9e-86 323.9 395 57.0
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 2.5e-86 323.6 374 58.3
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.5e-86 323.6 377 57.8
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 1.6e-85 320.9 404 59.4
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 3.6e-85 319.7 379 60.4
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 3.6e-85 319.7 384 62.2
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 4.7e-85 319.3 387 58.9
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 6.1e-85 318.9 401 58.1
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 3.9e-84 316.2 392 59.9
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.1e-83 314.7 382 50.5
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 1.1e-83 314.7 393 59.3
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 5.7e-83 312.4 406 56.7
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 1.3e-82 311.2 377 54.9
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 4.8e-82 309.3 373 59.8
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 1.4e-81 307.8 383 60.1
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 4.1e-81 306.2 392 51.3
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 7.0e-81 305.4 374 59.1
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.6e-80 303.5 380 56.3
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 4.5e-80 302.8 381 57.0
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 5.9e-80 302.4 367 51.2
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 5.0e-79 299.3 374 48.1
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 6.5e-79 298.9 396 59.1
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 8.5e-79 298.5 414 50.5
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 1.1e-78 298.1 386 55.2
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 1.1e-78 298.1 409 51.3
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 3.2e-78 296.6 392 57.7
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 4.2e-78 296.2 379 53.0
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 4.2e-78 296.2 400 55.5
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 4.2e-78 296.2 374 58.8
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 7.2e-78 295.4 413 56.2
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 1.2e-77 294.7 375 60.3
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 1.2e-77 294.7 389 64.3
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.6e-77 294.3 377 57.0
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 1.6e-77 294.3 381 55.9
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 2.1e-77 293.9 409 52.1
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 4.7e-77 292.7 369 54.5
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 6.1e-77 292.4 384 59.9
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.4e-76 291.2 386 59.6
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 2.3e-76 290.4 389 49.9
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 2.3e-76 290.4 390 60.0
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 3.0e-76 290.0 385 63.4
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 3.0e-76 290.0 374 59.1
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 3.9e-76 289.7 376 54.5
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 5.2e-76 289.3 323 56.7
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 8.8e-76 288.5 376 57.2
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 8.8e-76 288.5 384 61.5
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 1.1e-75 288.1 379 57.0
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 5.7e-75 285.8 377 53.8
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 5.7e-75 285.8 371 60.1
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 7.4e-75 285.4 376 59.0
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.7e-74 284.3 376 52.7
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 2.2e-74 283.9 379 57.0
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.7e-74 283.1 384 58.6
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 3.7e-74 283.1 375 64.3
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 8.2e-74 282.0 378 58.2
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 1.8e-73 280.8 382 57.6
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 2.4e-73 280.4 382 50.8
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 4.1e-73 279.6 380 63.2
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 5.3e-73 279.3 386 61.9
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 9.1e-73 278.5 375 61.1
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 9.1e-73 278.5 383 62.4
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 4.5e-72 276.2 380 54.5
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 4.5e-72 276.2 376 53.5
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 4.5e-72 276.2 387 62.0
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 1.0e-71 275.0 388 49.5
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 1.3e-71 274.6 372 57.0
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.7e-71 274.2 388 62.6
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.8e-71 273.1 379 56.2
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 5.0e-71 272.7 375 60.0
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 8.5e-71 271.9 382 56.3
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 1.9e-70 270.8 406 56.4
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 1.9e-70 270.8 324 62.7
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 3.2e-70 270.0 336 57.7
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 4.2e-70 269.6 376 51.6
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.2e-70 269.6 377 59.7
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 5.5e-70 269.2 381 60.4
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 9.4e-70 268.5 395 58.2
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 9.4e-70 268.5 395 58.2
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 1.6e-69 267.7 415 58.8
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 2.1e-69 267.3 373 51.5
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 6.1e-69 265.8 409 56.2
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 1.4e-68 264.6 379 63.9
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 3.0e-68 263.5 233 74.7
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 2.0e-67 260.8 441 42.9
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 1.3e-66 258.1 392 55.4
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 1.7e-66 257.7 387 52.2
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 2.2e-66 257.3 335 61.5
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 2.2e-66 257.3 376 49.7
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 2.2e-66 257.3 374 57.0
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 1.1e-65 255.0 180 70.6
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 3.1e-65 253.4 373 54.2
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 1.2e-64 251.5 376 51.9
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.2e-64 251.5 386 59.6
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 1.2e-64 251.5 276 59.4
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 2.7e-64 250.4 332 52.7
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.3e-63 248.1 383 55.9
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.3e-63 248.1 383 55.9
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 1.3e-63 248.1 392 48.0
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 2.9e-63 246.9 347 54.8
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 3.8e-63 246.5 372 54.0
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 1.1e-62 245.0 405 47.7
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.1e-62 245.0 281 55.2
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.1e-62 245.0 382 43.2
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 1.5e-62 244.6 357 56.0
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.9e-62 244.2 426 51.4
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 1.6e-61 241.1 367 50.1
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 4.7e-61 239.6 401 50.1
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.7e-61 239.6 328 55.8
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 8.8e-60 235.3 381 58.3
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 4.4e-59 233.0 176 68.8
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 1.4e-57 228.0 340 51.8
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 3.1e-57 226.9 279 52.3
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.6e-56 224.6 259 60.6
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.0e-55 221.9 380 50.8
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.7e-55 221.1 348 50.0
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 9.5e-54 215.3 381 49.9
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.6e-53 214.5 339 53.1
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 5.2e-52 209.5 211 56.4
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 6.8e-52 209.1 178 65.7
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.1e-49 201.8 345 51.6
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 2.1e-45 187.6 115 74.8
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 4.0e-44 183.3 178 56.2
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 5.8e-43 179.5 131 64.9
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 7.5e-43 179.1 111 73.0
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 4.1e-41 173.3 314 41.7
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 9.2e-41 172.2 250 52.8
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 1.2e-40 171.8 278 50.4
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 2.1e-37 161.0 253 45.5
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 6.2e-37 159.5 259 51.7
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 1.1e-36 158.7 299 38.5
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 7.3e-30 136.0 115 61.7
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 9.5e-30 135.6 285 39.6
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 3.1e-28 130.6 170 57.1
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 2.6e-27 127.5 286 37.1
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 7.1e-25 119.4 236 50.4
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 1.3e-23 115.2 160 55.0
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 4.4e-19 100.1 90 46.7
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 8.4e-18 95.9 284 35.9
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 1.2e-16 92.0 136 44.9
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 8.4e-10 69.3 47 66.0
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 7.1e-09 66.2 95 41.1
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 3.5e-08 63.9 92 40.2
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 3.5e-08 63.9 115 35.7
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 4.6e-08 63.5 104 36.5
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 7.9e-08 62.8 133 31.6
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 7.9e-08 62.8 102 33.3
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 2.3e-07 61.2 105 39.0
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 2.3e-07 61.2 96 41.7
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 2.3e-07 61.2 131 35.9
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 3.0e-07 60.8 125 36.0
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 3.9e-07 60.5 93 38.7
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 6.6e-07 59.7 36 61.1
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 8.7e-07 59.3 111 33.3
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 1.1e-06 58.9 34 61.8
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 1.5e-06 58.5 126 34.1
CSS0025735 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.5e-06 58.5 39 76.9
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 1.9e-06 58.2 38 65.8
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 2.5e-06 57.8 93 38.7
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 7.3e-06 56.2 34 58.8
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 7.3e-06 56.2 66 47.0
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 7.3e-06 56.2 38 60.5
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 9.6e-06 55.8 38 63.2
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 9.6e-06 55.8 38 63.2
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 9.6e-06 55.8 47 57.4


User provided reference genes

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