Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0056100 Salix brachista HOM05D000228 ORTHO05D005112 1.6e-135 486.1 251 100.0
Sabra06G0039200 Salix brachista HOM05D000228 ORTHO05D005112 2.9e-52 209.5 123 80.5
Potri.006G055300 Populus trichocarpa HOM05D000228 ORTHO05D005112 4.2e-51 205.7 123 78.9
Manes.09G029200 Manihot esculenta HOM05D000228 ORTHO05D005112 1.7e-44 183.7 123 69.9
Ciclev10004132m.g Citrus clementina HOM05D000228 ORTHO05D005112 6.1e-42 175.3 123 67.5
TWI75G0708 Tripterygium wilfordii HOM05D000228 ORTHO05D005112 3.0e-41 172.9 137 62.0
Duzib128G0079 Durio zibethinus HOM05D000228 ORTHO05D005112 2.2e-39 166.8 123 65.0
Thecc.05G162700 Theobroma cacao HOM05D000228 ORTHO05D005112 3.7e-39 166.0 137 60.6
Cpa.g.sc92.5 Carica papaya HOM05D000228 ORTHO05D005112 7.0e-38 161.8 123 62.6
CiPaw.09G034800 Carya illinoinensis HOM05D000228 ORTHO05D005112 2.7e-37 159.8 123 63.4
Glyma.10G095200 Glycine max HOM05D000228 ORTHO05D005112 2.7e-37 159.8 123 61.8
CANSAT80G1181 Cannabis sativa HOM05D000228 ORTHO05D005112 1.3e-36 157.5 123 62.6
THA.LOC104818848 Tarenaya hassleriana HOM05D000228 ORTHO05D005112 1.3e-36 157.5 123 60.2
ClCG10G017230 Citrullus lanatus HOM05D000228 ORTHO05D005112 1.7e-36 157.1 123 61.8
COL.COLO4_28678 Corchorus olitorius HOM05D000228 ORTHO05D005112 2.2e-36 156.8 123 63.4
Gohir.D03G070500 Gossypium hirsutum HOM05D000228 ORTHO05D005112 2.2e-36 156.8 123 63.4
Gorai.003G089300 Gossypium raimondii HOM05D000228 ORTHO05D005112 2.2e-36 156.8 123 63.4
arahy.Tifrunner.gnm1.ann1.L2VW3R Arachis hypogaea HOM05D000228 ORTHO05D005112 1.1e-35 154.5 137 57.7
Cfa016860 Carpinus fangiana HOM05D000228 ORTHO05D005112 1.1e-35 154.5 129 60.5
arahy.Tifrunner.gnm1.ann1.7V0RSZ Arachis hypogaea HOM05D000228 ORTHO05D005112 1.5e-35 154.1 125 60.8
Eucgr.K01811 Eucalyptus grandis HOM05D000228 ORTHO05D005112 1.5e-35 154.1 123 60.2
Lj5g0016256 Lotus japonicus HOM05D000228 ORTHO05D005112 1.5e-35 154.1 123 61.8
MELO3C009661.2 Cucumis melo HOM05D000228 ORTHO05D005112 1.9e-35 153.7 125 60.0
Sed0022055 Sechium edule HOM05D000228 ORTHO05D005112 1.9e-35 153.7 123 58.5
GSVIVG01033327001 Vitis vinifera HOM05D000228 ORTHO05D005112 1.9e-35 153.7 123 60.2
QL05p021274 Quercus lobata HOM05D000228 ORTHO05D005112 2.5e-35 153.3 123 61.0
Phvul.007G255400 Phaseolus vulgaris HOM05D000228 ORTHO05D005112 4.2e-35 152.5 123 59.3
PGR042G3811 Punica granatum HOM05D000228 ORTHO05D005112 4.2e-35 152.5 123 60.2
CsaV3_3G039160 Cucumis sativus L. HOM05D000228 ORTHO05D005112 5.5e-35 152.1 125 59.2
Haze_19911 Corylus avellana HOM05D000228 ORTHO05D005112 9.4e-35 151.4 129 59.7
VMungo0720G2008 Vigna mungo HOM05D000228 ORTHO05D005112 9.4e-35 151.4 123 58.5
Aa31sc1187G20 Aethionema arabicum HOM05D000228 ORTHO05D005112 2.7e-34 149.8 123 57.7
Aa31sc992G30 Aethionema arabicum HOM05D000228 ORTHO05D005112 2.7e-34 149.8 123 57.7
Prupe.7G067700 Prunus persica HOM05D000228 ORTHO05D005112 4.7e-34 149.1 125 58.4
Ca_25862_v3 Cicer arietinum L. HOM05D000228 ORTHO05D005112 8.0e-34 148.3 123 57.7
Ca_27020_v3 Cicer arietinum L. HOM05D000228 ORTHO05D005112 8.0e-34 148.3 123 57.7
MD12G1066600 Malus domestica HOM05D000228 ORTHO05D005112 4.0e-33 146.0 123 56.9
arahy.Tifrunner.gnm1.ann1.BY74GT Arachis hypogaea HOM05D000228 ORTHO05D005112 5.2e-33 145.6 125 57.6
BcaC07g40146 Brassica carinata HOM05D000228 ORTHO05D005112 6.8e-33 145.2 123 56.9
BcaC07g40356 Brassica carinata HOM05D000228 ORTHO05D005112 6.8e-33 145.2 123 56.9
C08p33230 Brassica napus HOM05D000228 ORTHO05D005112 6.8e-33 145.2 123 56.9
BolC8t50924H Brassica oleracea HOM05D000228 ORTHO05D005112 6.8e-33 145.2 123 56.9
A09p50510 Brassica napus HOM05D000228 ORTHO05D005112 8.8e-33 144.8 123 56.1
BraA09t40502Z Brassica rapa HOM05D000228 ORTHO05D005112 8.8e-33 144.8 123 56.1
A07p23580 Brassica napus HOM05D000228 ORTHO05D005112 1.5e-32 144.1 134 54.5
BraA07t30016Z Brassica rapa HOM05D000228 ORTHO05D005112 1.5e-32 144.1 134 54.5
CARHR167900 Cardamine hirsuta HOM05D000228 ORTHO05D005112 1.5e-32 144.1 123 56.9
Sp5g04970 Schrenkiella parvula HOM05D000228 ORTHO05D005112 1.5e-32 144.1 123 55.3
Medtr4g086290 Medicago truncatula HOM05D000228 ORTHO05D005112 2.0e-32 143.7 123 56.1
arahy.Tifrunner.gnm1.ann1.02EG99 Arachis hypogaea HOM05D000228 ORTHO05D005112 4.4e-32 142.5 125 57.6
Carub.0005s2449 Capsella rubella HOM05D000228 ORTHO05D005112 4.4e-32 142.5 123 56.1
Thhalv10005738m.g Eutrema salsugineum HOM05D000228 ORTHO05D005112 9.8e-32 141.4 125 56.0
BcaC08g44860 Brassica carinata HOM05D000228 ORTHO05D005112 2.2e-31 140.2 123 54.5
TPR.G28490 Trifolium pratense HOM05D000228 ORTHO05D005112 2.8e-31 139.8 123 57.7
AL5G39280 Arabidopsis lyrata HOM05D000228 ORTHO05D005112 4.8e-31 139.0 123 54.5
AT3G57660 Arabidopsis thaliana HOM05D000228 ORTHO05D005112 4.8e-31 139.0 123 54.5
Gohir.D09G216350 Gossypium hirsutum HOM05D000228 ORTHO05D005112 9.1e-30 134.8 118 55.9
C06p24710 Brassica napus HOM05D000228 ORTHO05D005112 1.2e-29 134.4 123 52.8
Gorai.006G236800 Gossypium raimondii HOM05D000228 ORTHO05D005112 1.2e-29 134.4 118 56.8
BcaB02g07586 Brassica carinata HOM05D000228 ORTHO05D005112 2.0e-29 133.7 123 53.7
Lalb_Chr16g0380371 Lupinus albus HOM05D000228 ORTHO05D005112 2.9e-28 129.8 123 52.0
Lalb_Chr09g0325001 Lupinus albus HOM05D000228 ORTHO05D005112 5.0e-28 129.0 123 51.2
Glyma.02G181200 Glycine max HOM05D000228 ORTHO05D005112 2.6e-24 116.7 98 56.1
SHI27541 Sapria himalayana HOM05D000228 ORTHO05D005112 7.5e-24 115.2 96 57.3
Sc20g0005060 Simmondsia chinensis HOM05D000228 ORTHO05D005112 1.3e-23 114.4 123 49.6
Dinv36249 Davidia involucrata HOM05D000228 ORTHO05D005112 1.7e-23 114.0 125 49.6
FvH4_5g35030 Fragaria vesca HOM05D000228 ORTHO05D005112 1.7e-23 114.0 128 50.0
FAN05G0345 Fragaria x ananassa HOM05D000228 ORTHO05D005112 2.8e-23 113.2 128 48.4
FvH4_5g34330 Fragaria vesca HOM05D000228 ORTHO05D005112 6.3e-23 112.1 128 49.2
FAN02G2218 Fragaria x ananassa HOM05D000228 ORTHO05D005112 6.3e-23 112.1 128 48.4
FAN09G2168 Fragaria x ananassa HOM05D000228 ORTHO05D005112 6.3e-23 112.1 128 48.4
RcHm_v2.0_Chr3g0481021 Rosa chinensis HOM05D000228 ORTHO05D005112 8.3e-23 111.7 128 48.4
FvH4_6g23210 Fragaria vesca HOM05D000228 ORTHO05D005112 2.4e-22 110.2 128 47.7
FAN14G5358 Fragaria x ananassa HOM05D000228 ORTHO05D005112 2.4e-22 110.2 128 47.7
EL10Ac2g03322 Beta vulgaris HOM05D000228 ORTHO05D005112 2.0e-21 107.1 125 45.6
Nn7g37022 Nelumbo nucifera HOM05D000228 ORTHO05D005112 3.5e-21 106.3 123 49.6
CSS0039942 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D005112 1.0e-20 104.8 131 43.5
Rhsim03G0012300 Rhododendron simsii HOM05D000228 ORTHO05D005112 1.3e-20 104.4 123 46.3
Hund24743 Selenicereus undatus HOM05D000228 ORTHO05D005112 2.3e-20 103.6 123 45.5
EL10Ac1g00646 Beta vulgaris HOM05D000228 ORTHO05D005112 2.9e-20 103.2 125 44.0
Cc06_g16580 Coffea canephora HOM05D000228 ORTHO05D005112 2.9e-20 103.2 131 44.3
vmacro20114 Vaccinium macrocarpon HOM05D000228 ORTHO05D005112 3.8e-20 102.8 130 45.4
EL10Ac1g00656 Beta vulgaris HOM05D000228 ORTHO05D005112 8.6e-20 101.7 125 44.0
AUR62020164 Chenopodium quinoa HOM05D000228 ORTHO05D005112 1.1e-19 101.3 137 40.1
Ah.13g070900 Amaranthus hybridus HOM05D000228 ORTHO05D005112 1.5e-19 100.9 123 44.7
AUR62043125 Chenopodium quinoa HOM05D000228 ORTHO05D005112 1.5e-19 100.9 130 41.5
Nitab4.5_0001347g0020 Nicotiana tabacum HOM05D000228 ORTHO05D005112 1.5e-19 100.9 125 44.8
Peaxi162Scf03258g00019 Petunia axillaris HOM05D000228 ORTHO05D005112 1.5e-19 100.9 125 44.8
CAN.G128.23 Capsicum annuum HOM05D000228 ORTHO05D005112 1.9e-19 100.5 125 45.6
MD14G1066700 Malus domestica HOM05D000228 ORTHO05D005112 1.9e-19 100.5 84 53.6
TAR636G3355 Trochodendron aralioides HOM05D000228 ORTHO05D005112 1.9e-19 100.5 123 46.3
Solyc10g080350.3 Solanum lycopersicum HOM05D000228 ORTHO05D005112 3.3e-19 99.8 125 44.0
Sopen10g030910 Solanum pennellii HOM05D000228 ORTHO05D005112 3.3e-19 99.8 125 44.0
Migut.J01785 Erythranthe guttata HOM05D000228 ORTHO05D005112 7.3e-19 98.6 125 44.8
AUR62039171 Chenopodium quinoa HOM05D000228 ORTHO05D005112 1.2e-18 97.8 137 41.6
HanXRQChr10g0290381 Helianthus annuus HOM05D000228 ORTHO05D005112 2.1e-18 97.1 134 41.0
AUR62032979 Chenopodium quinoa HOM05D000228 ORTHO05D005112 8.0e-18 95.1 137 42.3
Actinidia09359 Actinidia chinensis HOM05D000228 ORTHO05D005112 1.0e-17 94.7 161 37.3
Gohir.A02G107000 Gossypium hirsutum HOM05D000228 ORTHO05D005112 1.4e-17 94.4 75 60.0
Lsat_1_v5_gn_9_27541 Lactuca sativa HOM05D000228 ORTHO05D005112 1.4e-17 94.4 124 42.7
Lj7A597G62 Lonicera japonica HOM05D000228 ORTHO05D005112 1.4e-17 94.4 125 39.2
BolC6t37625H Brassica oleracea HOM05D000228 ORTHO05D005112 1.8e-17 94.0 122 41.0
Oeu004018.1 Olea europaea HOM05D000228 ORTHO05D005112 2.3e-17 93.6 129 41.1
Oeu004019.1 Olea europaea HOM05D000228 ORTHO05D005112 2.3e-17 93.6 129 41.1
MSTRG.931 Avicennia marina HOM05D000228 ORTHO05D005112 1.5e-16 90.9 130 40.8
PSO384G0893 Papaver somniferum HOM05D000228 ORTHO05D005112 1.5e-16 90.9 125 40.8
DCAR_020471 Daucus carota HOM05D000228 ORTHO05D005112 3.4e-16 89.7 125 40.0
CDE04G1016 Ceratophyllum demersum HOM05D000228 ORTHO05D005112 5.7e-16 89.0 123 42.3
Oeu033168.1 Olea europaea HOM05D000228 ORTHO05D005112 5.7e-16 89.0 128 39.8
PSO339G5840 Papaver somniferum HOM05D000228 ORTHO05D005112 5.7e-16 89.0 125 40.0
SalBow6G4505 Salvia bowleyana HOM05D000228 ORTHO05D005112 5.7e-16 89.0 128 39.1
Aqoxy2G00737 Aquilegia oxysepala HOM05D000228 ORTHO05D005112 7.5e-16 88.6 192 34.9
SGA_v2.0_scaffold105G30449 Striga asiatica HOM05D000228 ORTHO05D005112 1.7e-15 87.4 129 43.4
ECA247G1984 Erigeron canadensis HOM05D000228 ORTHO05D005112 4.9e-15 85.9 134 38.8
Aqoxy1G00159 Aquilegia oxysepala HOM05D000228 ORTHO05D005112 1.4e-14 84.3 137 39.4
HPP92_015356 Vanilla planifolia HOM05D000228 ORTHO05D005112 1.2e-13 81.3 122 38.5
Os06g0612200 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D005112 2.0e-13 80.5 137 38.0
unitig_32.g11071 Utricularia gibba HOM05D000228 ORTHO05D005112 2.7e-13 80.1 142 37.3
SEGI_28487 Sequoiadendron giganteum HOM05D000228 ORTHO05D005112 1.3e-12 77.8 123 38.2
SEGI_29995 Sequoiadendron giganteum HOM05D000228 ORTHO05D005112 1.3e-12 77.8 123 38.2
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 3.9e-12 76.3 82 53.7
Mapoly0053s0083 Marchantia polymorpha HOM05D000228 ORTHO05D005112 5.0e-12 75.9 135 36.3
SGA_v2.0_scaffold522G52702 Striga asiatica HOM05D000228 ORTHO05D005112 1.1e-11 74.7 131 38.9
Cpa.g.sc92.7 Carica papaya HOM05D000228 ORTHO05D005112 2.5e-11 73.6 55 60.0
Pp3c14_2730 Physcomitrium patens HOM05D000228 ORTHO05D005112 2.5e-11 73.6 123 36.6
ATR0605G316 Amborella trichopoda HOM05D000228 ORTHO05D005112 7.3e-11 72.0 128 35.2
Zm00001eb016000 Zea mays HOM05D000228 ORTHO05D005112 7.3e-11 72.0 73 50.7
Gohir.A02G106900 Gossypium hirsutum HOM05D000228 ORTHO05D005112 1.2e-10 71.2 55 58.2
AagrBONN_evm.TU.Sc2ySwM_117.4097 Anthoceros agrestis HOM05D000228 ORTHO05D005112 1.6e-10 70.9 123 33.3
Nitab4.5_0011154g0010 Nicotiana tabacum HOM05D000228 ORTHO05D005112 1.6e-10 70.9 55 58.2
Cre12.g529600 Chlamydomonas reinhardtii HOM05D000228 ORTHO05D005112 2.1e-10 70.5 81 48.1
Hma1.2p1_0621F.1_g190690 Hydrangea macrophylla HOM05D000228 ORTHO05D005112 3.6e-10 69.7 56 55.4
CBR_g4028 Chara braunii HOM05D000228 ORTHO05D005112 1.8e-09 67.4 123 34.1
Lj7C597G6 Lonicera japonica HOM05D000228 ORTHO05D005112 5.2e-09 65.9 56 55.4
Lsat_1_v5_gn_3_139821 Lactuca sativa HOM05D000228 ORTHO05D005112 3.4e-08 63.2 56 50.0
Lsat_1_v5_gn_6_77720 Lactuca sativa HOM05D000228 ORTHO05D005112 5.8e-08 62.4 56 48.2
Psat7g085520 Pisum sativum HOM05D000228 ORTHO05D005112 7.5e-08 62.0 55 56.4
Atru.chr1.1030 Acer truncatum HOM05D000228 ORTHO05D005112 9.8e-08 61.6 53 54.7
MCO12G205 Micromonas commoda HOM05D000228 ORTHO05D005112 1.3e-07 61.2 70 42.9
Oeu004020.1 Olea europaea HOM05D000228 ORTHO05D005112 2.9e-07 60.1 41 63.4
Ah.13g070880 Amaranthus hybridus HOM05D000228 ORTHO05D005112 8.3e-07 58.5 53 52.8
VMungo0720G2391 Vigna mungo HOM05D000228 ORTHO05D005112 1.1e-06 58.2 56 53.6
Haze_26399 Corylus avellana HOM05D000228 ORTHO05D005112 1.9e-06 57.4 70 44.3


User provided reference genes

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