Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 6.5e-235 817.0 406 100.0
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.4e-229 799.3 406 97.3
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 6.5e-227 790.4 406 95.8
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.2e-226 788.1 406 95.1
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 3.1e-213 745.0 407 90.7
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 3.1e-213 745.0 408 91.4
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 4.5e-212 741.1 405 90.6
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 2.9e-211 738.4 409 89.5
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 6.5e-211 737.3 408 90.4
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 8.5e-211 736.9 406 90.6
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.5e-210 735.3 407 90.9
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 6.1e-209 730.7 409 90.0
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 2.3e-208 728.8 410 89.5
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 3.0e-208 728.4 410 89.0
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 3.9e-208 728.0 408 89.2
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 3.9e-208 728.0 410 89.0
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 3.3e-207 724.9 409 90.0
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 5.7e-207 724.2 407 89.4
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 9.7e-207 723.4 403 88.6
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 1.8e-205 719.2 406 88.9
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.4e-205 718.8 411 88.3
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 3.1e-205 718.4 423 87.0
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.0e-204 715.7 407 90.7
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 2.6e-204 715.3 406 87.7
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 4.5e-204 714.5 407 87.2
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 4.5e-204 714.5 409 88.0
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 5.9e-204 714.1 413 87.7
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.3e-203 713.0 406 87.7
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.3e-203 713.0 409 87.8
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 2.2e-203 712.2 407 88.5
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 6.5e-203 710.7 408 87.0
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.1e-202 709.9 408 88.0
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 1.5e-202 709.5 418 85.9
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 3.2e-202 708.4 406 86.5
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 4.2e-202 708.0 407 87.7
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 4.2e-202 708.0 406 87.2
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 1.2e-201 706.4 405 88.1
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.2e-201 706.4 405 88.1
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.6e-201 706.1 407 85.5
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.7e-201 704.5 405 87.9
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.7e-201 704.5 408 87.5
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 8.0e-201 703.7 410 86.1
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.0e-200 703.4 409 86.8
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 1.0e-200 703.4 404 88.4
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.8e-200 702.6 405 87.7
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.8e-200 702.6 408 87.3
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 2.3e-200 702.2 422 84.8
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 3.0e-200 701.8 406 87.2
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 3.0e-200 701.8 407 85.5
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 8.8e-200 700.3 407 87.7
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.2e-199 699.9 408 86.8
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 2.6e-199 698.7 409 86.3
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 3.3e-199 698.4 409 86.1
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 1.3e-198 696.4 409 86.6
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 1.7e-198 696.0 409 85.8
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 1.7e-198 696.0 408 86.3
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 4.8e-198 694.5 412 85.2
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 4.8e-198 694.5 418 84.7
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.1e-197 693.3 407 84.3
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 1.4e-197 693.0 411 85.4
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.8e-197 692.6 418 84.9
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 9.1e-197 690.3 407 86.5
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 1.2e-196 689.9 413 85.0
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.2e-196 689.9 371 91.4
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 2.0e-196 689.1 414 84.5
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 2.7e-196 688.7 414 84.3
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 2.7e-196 688.7 414 84.3
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 2.7e-196 688.7 414 84.3
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 2.7e-196 688.7 407 82.6
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 3.5e-196 688.3 408 86.5
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 4.5e-196 688.0 411 84.9
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 4.5e-196 688.0 411 84.9
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 5.9e-196 687.6 414 84.3
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.0e-195 686.8 411 84.4
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 1.0e-195 686.8 408 86.3
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 1.3e-195 686.4 411 84.4
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 1.3e-195 686.4 408 85.5
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 2.2e-195 685.6 408 86.3
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 5.0e-195 684.5 408 85.3
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 5.0e-195 684.5 411 84.4
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 6.5e-195 684.1 408 84.8
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 3.2e-194 681.8 408 84.1
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 4.2e-194 681.4 406 84.7
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 5.5e-194 681.0 411 84.2
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 9.4e-194 680.2 422 82.5
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 9.4e-194 680.2 408 85.3
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 9.4e-194 680.2 408 85.3
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.2e-193 679.9 406 84.5
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.2e-193 679.9 411 83.9
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 6.1e-193 677.6 416 83.2
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 1.4e-192 676.4 360 92.2
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.8e-192 676.0 405 84.7
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 2.3e-192 675.6 418 82.8
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 4.0e-192 674.9 428 82.5
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 6.8e-192 674.1 407 83.5
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 9.8e-191 670.2 425 81.2
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 3.7e-190 668.3 375 87.7
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 4.8e-190 667.9 409 82.4
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.4e-189 666.4 413 82.8
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 3.1e-189 665.2 384 87.0
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 9.1e-189 663.7 357 89.9
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 2.0e-188 662.5 408 81.4
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 2.0e-188 662.5 372 87.6
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 4.5e-188 661.4 411 82.0
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 2.9e-187 658.7 378 86.5
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 9.5e-186 653.7 409 81.2
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 2.5e-178 629.0 333 91.3
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 6.1e-177 624.4 409 79.2
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 3.4e-175 618.6 376 82.4
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.3e-174 616.7 409 78.2
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 3.7e-174 615.1 353 83.3
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.4e-173 612.5 402 74.4
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 9.2e-173 610.5 357 82.1
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 7.8e-172 607.4 371 79.5
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.3e-163 580.1 339 85.0
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 4.3e-162 575.1 401 75.1
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 1.9e-157 559.7 338 84.6
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 8.6e-155 550.8 324 86.7
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 4.7e-153 545.0 319 85.6
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 3.4e-151 538.9 357 73.1
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 6.6e-147 524.6 380 67.4
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 9.6e-146 520.8 406 69.5
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.1e-144 515.8 309 83.8
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 2.6e-143 512.7 290 88.6
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 8.4e-142 507.7 286 85.3
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 3.3e-138 495.7 349 69.6
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 4.3e-138 495.4 301 84.4
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.3e-134 483.8 386 63.7
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 8.7e-131 471.1 372 62.6
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.3e-126 457.2 248 90.3
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.4e-117 427.2 285 77.2
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.2e-117 426.0 282 76.2
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 9.1e-104 381.3 320 65.6
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 1.7e-102 377.1 290 65.5
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 2.6e-58 230.3 132 85.6
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 3.4e-58 229.9 132 84.8
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 2.1e-52 210.7 370 36.8
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.7e-49 199.9 118 82.2
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.9e-49 199.5 118 81.4
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 2.6e-42 177.2 104 85.6
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 1.3e-41 174.9 103 85.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 1.3e-41 174.9 103 85.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 6.2e-36 156.0 94 83.0
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 6.2e-36 156.0 101 77.2
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 2.9e-33 147.1 100 76.0
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.9e-32 144.4 94 75.5
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 1.5e-26 124.8 105 67.6
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 4.4e-26 123.2 148 51.4
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 3.5e-23 113.6 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 2.3e-22 110.9 59 88.1
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 9.6e-21 105.5 81 69.1
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 2.4e-19 100.9 47 91.5
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 5.3e-19 99.8 62 83.9
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 9.0e-19 99.0 59 83.1
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 8.7e-14 82.4 80 62.5
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.4e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 3.5e-07 60.5 53 60.4


User provided reference genes

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