Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 1.9e-278 961.8 482 100.0
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 1.6e-131 473.8 264 90.2
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 5.5e-100 369.0 268 70.9
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 4.7e-99 365.9 263 70.7
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 1.8e-98 364.0 269 70.6
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 3.0e-98 363.2 266 68.8
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 3.0e-98 363.2 266 68.8
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 5.2e-98 362.5 269 70.3
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 6.8e-98 362.1 462 47.6
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 4.4e-97 359.4 247 74.1
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 2.2e-96 357.1 247 73.7
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 4.8e-96 355.9 247 73.3
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.7e-94 350.1 268 68.7
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 5.0e-93 345.9 261 67.0
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 8.5e-93 345.1 261 67.0
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 3.2e-92 343.2 271 64.2
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 4.2e-92 342.8 264 65.9
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 2.7e-91 340.1 280 64.6
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 2.7e-91 340.1 264 66.7
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 4.7e-91 339.3 450 45.8
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 8.0e-91 338.6 260 66.2
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 1.0e-90 338.2 280 62.9
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 1.0e-90 338.2 268 66.4
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 2.3e-90 337.0 285 61.8
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 3.0e-90 336.7 265 63.0
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 3.0e-90 336.7 268 66.8
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 4.0e-90 336.3 268 65.3
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 5.2e-90 335.9 260 66.2
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 6.8e-90 335.5 224 71.9
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.2e-89 334.7 271 65.3
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 2.0e-89 334.0 264 63.6
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 2.6e-89 333.6 262 66.8
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 2.6e-89 333.6 294 61.6
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 2.6e-89 333.6 292 61.6
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 5.7e-89 332.4 271 64.9
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 5.7e-89 332.4 262 66.8
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 7.5e-89 332.0 263 63.9
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 7.5e-89 332.0 264 62.1
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 9.8e-89 331.6 265 65.7
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.8e-88 330.1 276 62.3
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 3.7e-88 329.7 219 72.6
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 3.7e-88 329.7 288 60.1
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 3.7e-88 329.7 281 62.6
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 8.3e-88 328.6 263 65.4
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 8.3e-88 328.6 270 61.9
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.4e-87 327.8 279 61.6
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 1.8e-87 327.4 268 64.9
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 3.1e-87 326.6 289 60.6
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 5.4e-87 325.9 254 66.9
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.2e-86 324.7 293 61.4
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 1.2e-86 324.7 265 63.8
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 1.6e-86 324.3 270 62.6
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 2.0e-86 323.9 278 61.9
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 2.0e-86 323.9 278 61.9
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 2.7e-86 323.6 266 65.0
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 3.5e-86 323.2 276 60.1
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 4.5e-86 322.8 255 63.9
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 7.7e-86 322.0 276 61.6
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 1.0e-85 321.6 274 62.4
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 1.0e-85 321.6 266 64.7
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.0e-85 321.6 281 60.1
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 1.3e-85 321.2 288 60.8
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 1.7e-85 320.9 273 63.0
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 2.3e-85 320.5 265 62.3
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 2.3e-85 320.5 298 58.4
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 3.8e-85 319.7 265 64.5
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 5.0e-85 319.3 267 62.9
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 6.6e-85 318.9 291 58.8
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 6.6e-85 318.9 231 68.0
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 6.6e-85 318.9 285 59.3
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 4.2e-84 316.2 288 56.9
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 7.2e-84 315.5 273 60.8
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 7.2e-84 315.5 273 60.8
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 7.2e-84 315.5 273 60.8
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 7.2e-84 315.5 283 60.1
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 7.2e-84 315.5 271 59.4
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 1.2e-83 314.7 288 57.3
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.6e-83 314.3 282 59.2
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 2.1e-83 313.9 274 60.9
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 2.8e-83 313.5 271 61.6
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 2.8e-83 313.5 288 56.9
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 4.7e-83 312.8 283 58.7
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 4.7e-83 312.8 225 66.7
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 8.0e-83 312.0 223 67.7
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 1.8e-82 310.8 275 61.1
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.5e-81 307.8 283 59.4
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 1.7e-80 304.3 285 57.9
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 1.7e-80 304.3 261 61.3
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.8e-80 303.5 181 77.9
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 4.9e-80 302.8 269 59.1
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 4.9e-80 302.8 269 59.1
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 4.9e-80 302.8 269 59.1
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 8.3e-80 302.0 458 42.4
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 2.4e-79 300.4 284 57.4
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 2.4e-79 300.4 182 77.5
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.2e-78 298.1 185 76.2
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 2.0e-78 297.4 195 70.3
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 4.3e-76 289.7 235 60.0
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 1.6e-75 287.7 259 59.8
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.4e-74 284.6 264 57.2
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 9.8e-73 278.5 289 52.9
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.9e-72 276.9 228 59.6
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 8.3e-72 275.4 273 54.6
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 1.1e-71 275.0 227 59.9
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.2e-70 271.6 226 60.2
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 4.6e-70 269.6 193 64.2
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 1.7e-69 267.7 262 56.1
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 8.6e-69 265.4 228 56.6
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 8.6e-69 265.4 228 56.6
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.2e-67 261.5 228 55.7
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 3.6e-67 260.0 224 62.5
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 4.0e-66 256.5 225 60.0
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 6.0e-62 242.7 237 51.5
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 2.5e-60 237.3 213 60.1
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 2.5e-60 237.3 166 68.7
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 6.8e-58 229.2 195 54.4
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 8.3e-56 222.2 179 58.1
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 8.6e-53 212.2 255 49.4
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 2.1e-51 207.6 176 56.2
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 7.1e-47 192.6 175 57.7
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 6.6e-45 186.0 244 42.6
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 6.6e-45 186.0 171 55.0
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 1.5e-41 174.9 109 75.2
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.3e-37 161.8 270 39.3
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 1.7e-37 161.4 100 74.0
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 2.6e-33 147.5 149 55.0
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 2.1e-30 137.9 98 70.4
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 5.3e-26 123.2 165 46.1
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.4e-25 120.6 148 43.2
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-24 118.6 174 38.5
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 2.2e-24 117.9 191 39.3
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.5e-24 116.3 148 41.9
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.1e-23 115.5 148 41.9
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.1e-20 105.5 59 81.4
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.8e-19 100.1 138 39.9
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.3e-18 96.7 127 40.9
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.4e-17 94.0 99 46.5
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 5.0e-16 90.1 71 64.8
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 1.4e-15 88.6 51 76.5
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-15 88.6 131 32.8
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.2e-15 86.3 168 29.8
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 3.0e-13 80.9 50 78.0
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-11 75.5 133 31.6
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.3e-11 75.5 133 31.6
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.8e-11 74.3 174 28.2
CSS0038714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-10 72.0 167 35.9
SHI14898 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-10 71.6 48 79.2
CSS0032072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.0e-10 69.3 166 32.5
SHI50772 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-09 67.8 63 63.5
SHI51207 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-09 67.8 63 63.5
SHI51563 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-09 67.8 63 63.5
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 3.4e-09 67.4 110 33.6
AUR62035990 Chenopodium quinoa HOM05D000002 ORTHO05D000001 4.5e-09 67.0 196 32.7
PSO832G3990 Papaver somniferum HOM05D000002 ORTHO05D000001 1.0e-08 65.9 182 31.3
CSS0026931 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-08 65.1 169 30.8
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 1.7e-08 65.1 56 50.0
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 2.2e-08 64.7 68 48.5
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 5.0e-08 63.5 60 48.3
SHI29924 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-07 62.4 46 71.7
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-07 62.0 103 35.9
ECA248G3175 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-07 61.2 159 32.7
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 4.2e-07 60.5 119 29.4
PSO724G1362 Papaver somniferum HOM05D000002 ORTHO05D000001 5.5e-07 60.1 60 50.0
SHI14921 Sapria himalayana HOM05D000002 ORTHO05D000001 5.5e-07 60.1 202 30.2
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 7.2e-07 59.7 32 78.1
CSS0045539 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.4e-07 59.3 82 37.8
SHI07858 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-07 59.3 188 30.3
PSO675G7382 Papaver somniferum HOM05D000002 ORTHO05D000001 1.2e-06 58.9 54 57.4
CSS0038784 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-06 58.2 151 31.1
PSO144G0025 Papaver somniferum HOM05D000002 ORTHO05D000001 2.1e-06 58.2 44 63.6
CSS0038576 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-06 57.8 49 55.1
ECA233G3007 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.7e-06 57.8 207 28.5
CSS0023755 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-06 57.4 194 30.9
TPR.G4389 Trifolium pratense HOM05D000002 ORTHO05D000001 3.6e-06 57.4 196 27.6
PSO104G0060 Papaver somniferum HOM05D000002 ORTHO05D000001 4.6e-06 57.0 48 56.2
PSO421G0308 Papaver somniferum HOM05D000002 ORTHO05D000001 6.1e-06 56.6 59 44.1
RcHm_v2.0_Chr5g0074721 Rosa chinensis HOM05D000002 ORTHO05D000001 6.1e-06 56.6 48 56.2
PSO017G4757 Papaver somniferum HOM05D000002 ORTHO05D000001 7.9e-06 56.2 68 45.6
RcHm_v2.0_Chr3g0483351 Rosa chinensis HOM05D000002 ORTHO05D000001 7.9e-06 56.2 85 40.0
Solyc07g014595.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 7.9e-06 56.2 60 46.7


User provided reference genes

Program Settings