Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0053700 Salix brachista HOM05D003916 ORTHO05D004655 2.8e-82 308.5 154 100.0
Potri.009G070900 Populus trichocarpa HOM05D003916 ORTHO05D004655 3.5e-48 195.3 106 93.4
Actinidia19401 Actinidia chinensis HOM05D003916 ORTHO05D004655 1.0e-47 193.7 109 89.0
Manes.07G007100 Manihot esculenta HOM05D003916 ORTHO05D004655 3.0e-47 192.2 106 91.5
arahy.Tifrunner.gnm1.ann1.8R0KJ7 Arachis hypogaea HOM05D003916 ORTHO05D004655 3.9e-47 191.8 108 87.0
Eucgr.G03369 Eucalyptus grandis HOM05D003916 ORTHO05D004655 5.0e-47 191.4 106 88.7
Rhsim07G0056500 Rhododendron simsii HOM05D003916 ORTHO05D004655 5.0e-47 191.4 106 89.6
vmacro13676 Vaccinium macrocarpon HOM05D003916 ORTHO05D004655 5.0e-47 191.4 124 82.3
DCAR_022384 Daucus carota HOM05D003916 ORTHO05D004655 6.6e-47 191.0 107 89.7
Thecc.01G409200 Theobroma cacao HOM05D003916 ORTHO05D004655 8.6e-47 190.7 106 89.6
ClCG10G012300 Citrullus lanatus HOM05D003916 ORTHO05D004655 1.1e-46 190.3 107 88.8
CsaV3_3G032080 Cucumis sativus L. HOM05D003916 ORTHO05D004655 1.1e-46 190.3 109 88.1
Dinv43429 Davidia involucrata HOM05D003916 ORTHO05D004655 1.1e-46 190.3 106 89.6
Duzib138G1764 Durio zibethinus HOM05D003916 ORTHO05D004655 1.1e-46 190.3 106 89.6
Hma1.2p1_0495F.1_g165640 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 1.1e-46 190.3 106 89.6
COL.COLO4_04866 Corchorus olitorius HOM05D003916 ORTHO05D004655 1.5e-46 189.9 106 89.6
MELO3C023983.2 Cucumis melo HOM05D003916 ORTHO05D004655 1.5e-46 189.9 112 86.6
Gohir.A05G320501 Gossypium hirsutum HOM05D003916 ORTHO05D004655 1.5e-46 189.9 107 87.9
Gohir.D05G317100 Gossypium hirsutum HOM05D003916 ORTHO05D004655 1.5e-46 189.9 107 87.9
Gorai.009G339400 Gossypium raimondii HOM05D003916 ORTHO05D004655 1.5e-46 189.9 107 87.9
GSVIVG01036004001 Vitis vinifera HOM05D003916 ORTHO05D004655 1.5e-46 189.9 107 89.7
CiPaw.13G006500 Carya illinoinensis HOM05D003916 ORTHO05D004655 1.9e-46 189.5 107 89.7
Manes.10G140600 Manihot esculenta HOM05D003916 ORTHO05D004655 1.9e-46 189.5 106 90.6
Sed0020332 Sechium edule HOM05D003916 ORTHO05D004655 1.9e-46 189.5 109 87.2
Cfa010792 Carpinus fangiana HOM05D003916 ORTHO05D004655 2.5e-46 189.1 106 89.6
COL.COLO4_11374 Corchorus olitorius HOM05D003916 ORTHO05D004655 2.5e-46 189.1 106 88.7
Haze_03179 Corylus avellana HOM05D003916 ORTHO05D004655 2.5e-46 189.1 106 89.6
Hma1.2p1_0184F.1_g081310 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 2.5e-46 189.1 106 88.7
PGR031G2324 Punica granatum HOM05D003916 ORTHO05D004655 3.3e-46 188.7 106 88.7
QL04p008135 Quercus lobata HOM05D003916 ORTHO05D004655 3.3e-46 188.7 106 88.7
QL04p008511 Quercus lobata HOM05D003916 ORTHO05D004655 3.3e-46 188.7 106 88.7
arahy.Tifrunner.gnm1.ann1.YBFT0T Arachis hypogaea HOM05D003916 ORTHO05D004655 4.3e-46 188.3 106 87.7
CSS0038705 Camellia sinensis var. sinensis HOM05D003916 ORTHO05D004655 4.3e-46 188.3 106 88.7
Oeu048996.1 Olea europaea HOM05D003916 ORTHO05D004655 4.3e-46 188.3 149 70.5
Prupe.8G106600 Prunus persica HOM05D003916 ORTHO05D004655 4.3e-46 188.3 106 88.7
TWI09G0558 Tripterygium wilfordii HOM05D003916 ORTHO05D004655 4.3e-46 188.3 106 88.7
Gohir.A08G054500 Gossypium hirsutum HOM05D003916 ORTHO05D004655 5.6e-46 188.0 107 86.9
FvH4_2g07830 Fragaria vesca HOM05D003916 ORTHO05D004655 7.3e-46 187.6 106 88.7
FAN15G2464 Fragaria x ananassa HOM05D003916 ORTHO05D004655 7.3e-46 187.6 106 88.7
FAN20G2116 Fragaria x ananassa HOM05D003916 ORTHO05D004655 7.3e-46 187.6 106 88.7
FAN24G3392 Fragaria x ananassa HOM05D003916 ORTHO05D004655 7.3e-46 187.6 106 88.7
FAN27G3016 Fragaria x ananassa HOM05D003916 ORTHO05D004655 7.3e-46 187.6 106 88.7
Lj3g0019679 Lotus japonicus HOM05D003916 ORTHO05D004655 7.3e-46 187.6 106 88.7
unitig_0.g2398 Utricularia gibba HOM05D003916 ORTHO05D004655 7.3e-46 187.6 107 86.9
Gorai.004G066500 Gossypium raimondii HOM05D003916 ORTHO05D004655 9.5e-46 187.2 107 86.9
MD05G1071600 Malus domestica HOM05D003916 ORTHO05D004655 9.5e-46 187.2 106 87.7
TAR636G0073 Trochodendron aralioides HOM05D003916 ORTHO05D004655 9.5e-46 187.2 132 73.5
MD10G1083600 Malus domestica HOM05D003916 ORTHO05D004655 1.2e-45 186.8 106 87.7
Phvul.011G010100 Phaseolus vulgaris HOM05D003916 ORTHO05D004655 1.2e-45 186.8 106 87.7
VMungo1127G0323 Vigna mungo HOM05D003916 ORTHO05D004655 1.2e-45 186.8 106 87.7
Gohir.D08G064200 Gossypium hirsutum HOM05D003916 ORTHO05D004655 1.6e-45 186.4 107 86.0
SGA_v2.0_scaffold7G04094 Striga asiatica HOM05D003916 ORTHO05D004655 2.8e-45 185.7 106 87.7
AL5G32640 Arabidopsis lyrata HOM05D003916 ORTHO05D004655 3.6e-45 185.3 106 86.8
MSTRG.9650 Avicennia marina HOM05D003916 ORTHO05D004655 3.6e-45 185.3 107 85.0
Carub.0005s1841 Capsella rubella HOM05D003916 ORTHO05D004655 3.6e-45 185.3 106 86.8
CARHR161800 Cardamine hirsuta HOM05D003916 ORTHO05D004655 3.6e-45 185.3 106 86.8
Nn7g36243 Nelumbo nucifera HOM05D003916 ORTHO05D004655 3.6e-45 185.3 106 87.7
SGA_v2.0_scaffold114G31877 Striga asiatica HOM05D003916 ORTHO05D004655 3.6e-45 185.3 111 83.8
CANSAT35G0488 Cannabis sativa HOM05D003916 ORTHO05D004655 4.7e-45 184.9 106 85.8
ECA234G4622 Erigeron canadensis HOM05D003916 ORTHO05D004655 4.7e-45 184.9 106 86.8
Glyma.09G228500 Glycine max HOM05D003916 ORTHO05D004655 4.7e-45 184.9 106 86.8
Lalb_Chr03g0040011 Lupinus albus HOM05D003916 ORTHO05D004655 4.7e-45 184.9 106 86.8
THA.LOC104801974 Tarenaya hassleriana HOM05D003916 ORTHO05D004655 4.7e-45 184.9 106 87.7
TAR633G2550 Trochodendron aralioides HOM05D003916 ORTHO05D004655 4.7e-45 184.9 106 85.8
BcaC02g09283 Brassica carinata HOM05D003916 ORTHO05D004655 6.2e-45 184.5 107 86.9
A04p07280 Brassica napus HOM05D003916 ORTHO05D004655 6.2e-45 184.5 155 67.7
C04p40890 Brassica napus HOM05D003916 ORTHO05D004655 6.2e-45 184.5 107 86.9
BolC4t25674H Brassica oleracea HOM05D003916 ORTHO05D004655 6.2e-45 184.5 107 86.9
BraA04t16424Z Brassica rapa HOM05D003916 ORTHO05D004655 6.2e-45 184.5 132 75.0
Ciclev10033103m.g Citrus clementina HOM05D003916 ORTHO05D004655 6.2e-45 184.5 106 87.7
Migut.D01881 Erythranthe guttata HOM05D003916 ORTHO05D004655 6.2e-45 184.5 107 86.0
Migut.O00412 Erythranthe guttata HOM05D003916 ORTHO05D004655 6.2e-45 184.5 107 86.0
Glyma.12G008000 Glycine max HOM05D003916 ORTHO05D004655 6.2e-45 184.5 106 85.8
AT3G52090 Arabidopsis thaliana HOM05D003916 ORTHO05D004655 8.1e-45 184.1 106 86.8
MBI04_g41600_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 8.1e-45 184.1 106 86.8
Atru.chr11.2605 Acer truncatum HOM05D003916 ORTHO05D004655 1.1e-44 183.7 106 86.8
Sp5g10210 Schrenkiella parvula HOM05D003916 ORTHO05D004655 1.1e-44 183.7 106 86.8
BcaB01g00447 Brassica carinata HOM05D003916 ORTHO05D004655 1.4e-44 183.3 106 86.8
BcaB02g08590 Brassica carinata HOM05D003916 ORTHO05D004655 1.4e-44 183.3 106 86.8
BcaNung06090 Brassica carinata HOM05D003916 ORTHO05D004655 1.4e-44 183.3 106 86.8
A09p45160 Brassica napus HOM05D003916 ORTHO05D004655 1.4e-44 183.3 106 86.8
C08p27350 Brassica napus HOM05D003916 ORTHO05D004655 1.4e-44 183.3 106 86.8
Nitab4.5_0005283g0050 Nicotiana tabacum HOM05D003916 ORTHO05D004655 1.4e-44 183.3 106 86.8
SalBow8G4163 Salvia bowleyana HOM05D003916 ORTHO05D004655 1.4e-44 183.3 107 86.0
Thhalv10010833m.g Eutrema salsugineum HOM05D003916 ORTHO05D004655 2.3e-44 182.6 106 84.9
Aa31LG10G7160 Aethionema arabicum HOM05D003916 ORTHO05D004655 3.1e-44 182.2 114 80.7
BraA09t39977Z Brassica rapa HOM05D003916 ORTHO05D004655 3.1e-44 182.2 122 78.7
Psat0s2770g0080 Pisum sativum HOM05D003916 ORTHO05D004655 3.1e-44 182.2 106 86.8
TPR.G3662 Trifolium pratense HOM05D003916 ORTHO05D004655 3.1e-44 182.2 106 86.8
HanXRQChr01g0016491 Helianthus annuus HOM05D003916 ORTHO05D004655 4.0e-44 181.8 106 85.8
Haze_25581 Corylus avellana HOM05D003916 ORTHO05D004655 5.2e-44 181.4 106 87.7
Nitab4.5_0010117g0010 Nicotiana tabacum HOM05D003916 ORTHO05D004655 5.2e-44 181.4 106 84.9
RcHm_v2.0_Chr6g0262241 Rosa chinensis HOM05D003916 ORTHO05D004655 5.2e-44 181.4 106 86.8
Medtr4g037750 Medicago truncatula HOM05D003916 ORTHO05D004655 6.8e-44 181.0 106 85.8
Peaxi162Scf00948g00222 Petunia axillaris HOM05D003916 ORTHO05D004655 6.8e-44 181.0 106 85.8
Aqoxy3G00363 Aquilegia oxysepala HOM05D003916 ORTHO05D004655 8.9e-44 180.6 106 84.9
Ca_04149_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 8.9e-44 180.6 106 85.8
Ca_22196_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 8.9e-44 180.6 106 85.8
Peaxi162Scf00619g00024 Petunia axillaris HOM05D003916 ORTHO05D004655 8.9e-44 180.6 106 84.9
Solyc11g069910.2 Solanum lycopersicum HOM05D003916 ORTHO05D004655 8.9e-44 180.6 106 84.9
Sopen11g028370 Solanum pennellii HOM05D003916 ORTHO05D004655 8.9e-44 180.6 106 84.9
PGSC0003DMG400008095 Solanum tuberosum HOM05D003916 ORTHO05D004655 8.9e-44 180.6 106 84.9
CAN.G631.46 Capsicum annuum HOM05D003916 ORTHO05D004655 1.2e-43 180.3 106 84.9
Nitab4.5_0000130g0090 Nicotiana tabacum HOM05D003916 ORTHO05D004655 1.5e-43 179.9 158 62.7
ATR0751G171 Amborella trichopoda HOM05D003916 ORTHO05D004655 2.0e-43 179.5 106 84.0
Zm00001eb214480 Zea mays HOM05D003916 ORTHO05D004655 2.0e-43 179.5 106 84.9
Zm00001eb247210 Zea mays HOM05D003916 ORTHO05D004655 2.0e-43 179.5 106 84.9
AUR62018571 Chenopodium quinoa HOM05D003916 ORTHO05D004655 2.6e-43 179.1 106 85.8
AUR62020845 Chenopodium quinoa HOM05D003916 ORTHO05D004655 2.6e-43 179.1 106 85.8
ECA248G0794 Erigeron canadensis HOM05D003916 ORTHO05D004655 3.4e-43 178.7 106 84.9
Hund20252 Selenicereus undatus HOM05D003916 ORTHO05D004655 4.4e-43 178.3 106 84.9
arahy.Tifrunner.gnm1.ann1.KPCT5J Arachis hypogaea HOM05D003916 ORTHO05D004655 7.5e-43 177.6 106 82.1
arahy.Tifrunner.gnm1.ann1.U5V8MN Arachis hypogaea HOM05D003916 ORTHO05D004655 7.5e-43 177.6 106 82.1
Oeu061209.2 Olea europaea HOM05D003916 ORTHO05D004655 7.5e-43 177.6 139 68.3
Cc03_g12460 Coffea canephora HOM05D003916 ORTHO05D004655 9.8e-43 177.2 126 73.8
Dinv09344 Davidia involucrata HOM05D003916 ORTHO05D004655 1.3e-42 176.8 108 84.3
PSO782G0643 Papaver somniferum HOM05D003916 ORTHO05D004655 1.7e-42 176.4 105 82.9
PSO591G0016 Papaver somniferum HOM05D003916 ORTHO05D004655 2.2e-42 176.0 106 82.1
PSO832G0252 Papaver somniferum HOM05D003916 ORTHO05D004655 4.9e-42 174.9 106 81.1
EL10Ac3g07468 Beta vulgaris HOM05D003916 ORTHO05D004655 1.1e-41 173.7 106 83.0
PSO063G3578 Papaver somniferum HOM05D003916 ORTHO05D004655 1.1e-41 173.7 105 81.9
CDE10G1144 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 1.9e-41 172.9 106 78.3
Os07g0172500 Oryza sativa ssp. japonica HOM05D003916 ORTHO05D004655 3.2e-41 172.2 106 79.2
HPP92_009912 Vanilla planifolia HOM05D003916 ORTHO05D004655 3.2e-41 172.2 106 81.1
Zm00001eb247270 Zea mays HOM05D003916 ORTHO05D004655 3.2e-41 172.2 107 81.3
Sc10g0000140 Simmondsia chinensis HOM05D003916 ORTHO05D004655 1.2e-40 170.2 106 83.0
AagrBONN_evm.TU.Sc2ySwM_368.1572 Anthoceros agrestis HOM05D003916 ORTHO05D004655 1.6e-40 169.9 106 77.4
Zm00001eb247220 Zea mays HOM05D003916 ORTHO05D004655 1.3e-39 166.8 106 80.2
Duzib133G0053 Durio zibethinus HOM05D003916 ORTHO05D004655 1.7e-39 166.4 107 81.3
MELO3C023562.2 Cucumis melo HOM05D003916 ORTHO05D004655 2.3e-39 166.0 106 79.2
CsaV3_7G030940 Cucumis sativus L. HOM05D003916 ORTHO05D004655 2.3e-39 166.0 106 79.2
Lsat_1_v5_gn_1_106300 Lactuca sativa HOM05D003916 ORTHO05D004655 2.3e-39 166.0 106 81.1
SMO145G0130 Selaginella moellendorffii HOM05D003916 ORTHO05D004655 3.0e-39 165.6 106 73.6
SEGI_28477 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 3.9e-39 165.2 107 74.8
Cpa.g.sc125.23 Carica papaya HOM05D003916 ORTHO05D004655 8.6e-39 164.1 133 67.7
Sed0017618 Sechium edule HOM05D003916 ORTHO05D004655 8.6e-39 164.1 107 79.4
SEGI_19516 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 1.5e-38 163.3 102 79.4
Mapoly0064s0055 Marchantia polymorpha HOM05D003916 ORTHO05D004655 2.5e-38 162.5 106 72.6
Pp3c2_2740 Physcomitrium patens HOM05D003916 ORTHO05D004655 2.1e-37 159.5 106 72.6
Zm00001eb247250 Zea mays HOM05D003916 ORTHO05D004655 3.6e-37 158.7 98 82.7
Zm00001eb247300 Zea mays HOM05D003916 ORTHO05D004655 3.4e-35 152.1 104 76.0
ClCG09G004040 Citrullus lanatus HOM05D003916 ORTHO05D004655 6.4e-34 147.9 144 58.3
Nitab4.5_0002959g0030 Nicotiana tabacum HOM05D003916 ORTHO05D004655 2.7e-32 142.5 103 73.8
Pp3c14_14340 Physcomitrium patens HOM05D003916 ORTHO05D004655 7.8e-32 141.0 104 66.3
CDE10G1147 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 2.3e-31 139.4 104 69.2
CiPaw.14G001100 Carya illinoinensis HOM05D003916 ORTHO05D004655 7.3e-30 134.4 82 79.3
BolC8t50352H Brassica oleracea HOM05D003916 ORTHO05D004655 3.6e-29 132.1 73 86.3
Sc23g0005950 Simmondsia chinensis HOM05D003916 ORTHO05D004655 8.1e-29 131.0 80 80.0
Medtr6g004540 Medicago truncatula HOM05D003916 ORTHO05D004655 1.1e-28 130.6 72 87.5
AUR62043813 Chenopodium quinoa HOM05D003916 ORTHO05D004655 2.6e-27 125.9 129 55.8
SEGI_39087 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 1.4e-25 120.2 73 76.7
CiPaw.15G004900 Carya illinoinensis HOM05D003916 ORTHO05D004655 1.9e-25 119.8 89 61.8
AagrBONN_evm.TU.Sc2ySwM_368.1582 Anthoceros agrestis HOM05D003916 ORTHO05D004655 4.2e-25 118.6 81 70.4
Sc11g0009080 Simmondsia chinensis HOM05D003916 ORTHO05D004655 7.1e-25 117.9 102 64.7
CiPaw.07G027500 Carya illinoinensis HOM05D003916 ORTHO05D004655 1.6e-24 116.7 82 68.3
PRCOL_00004893 Prasinoderma coloniale HOM05D003916 ORTHO05D004655 1.7e-23 113.2 104 50.0
Zm00001eb247280 Zea mays HOM05D003916 ORTHO05D004655 2.5e-22 109.4 88 63.6
MCO15G160 Micromonas commoda HOM05D003916 ORTHO05D004655 5.6e-22 108.2 101 48.5
DCAR_003218 Daucus carota HOM05D003916 ORTHO05D004655 3.1e-20 102.4 57 87.7
Migut.E00937 Erythranthe guttata HOM05D003916 ORTHO05D004655 5.3e-20 101.7 58 84.5
Zm00001eb247290 Zea mays HOM05D003916 ORTHO05D004655 7.6e-19 97.8 48 93.8
Zm00001eb247230 Zea mays HOM05D003916 ORTHO05D004655 2.2e-18 96.3 48 91.7
Haze_26797 Corylus avellana HOM05D003916 ORTHO05D004655 2.9e-18 95.9 105 47.6
Haze_27709 Corylus avellana HOM05D003916 ORTHO05D004655 2.9e-18 95.9 105 47.6
MBI04_g44437_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 6.4e-18 94.7 56 83.9
Cre13.g565550 Chlamydomonas reinhardtii HOM05D003916 ORTHO05D004655 4.2e-17 92.0 106 43.4
CDE10G0872 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 1.0e-15 87.4 52 78.8
MBI06_g01064_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 3.0e-15 85.9 55 76.4
CiPaw.03G260400 Carya illinoinensis HOM05D003916 ORTHO05D004655 2.4e-12 76.3 60 66.7
A03p48670 Brassica napus HOM05D003916 ORTHO05D004655 4.0e-12 75.5 49 75.5
BraA03t13970Z Brassica rapa HOM05D003916 ORTHO05D004655 4.0e-12 75.5 49 75.5
Cfa026890 Carpinus fangiana HOM05D003916 ORTHO05D004655 2.6e-11 72.8 104 36.5
AUR62028413 Chenopodium quinoa HOM05D003916 ORTHO05D004655 9.3e-09 64.3 69 50.7
AUR62029883 Chenopodium quinoa HOM05D003916 ORTHO05D004655 1.2e-08 63.9 69 50.7
Hund27923 Selenicereus undatus HOM05D003916 ORTHO05D380132 7.9e-08 61.2 38 76.3
SEGI_03740 Sequoiadendron giganteum HOM05D018713 ORTHO05D000093 8.7e-07 57.8 110 40.0
Cre12.g484100 Chlamydomonas reinhardtii HOM05D003953 ORTHO05D004618 7.4e-06 54.7 77 33.8


User provided reference genes

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