Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 4.4e-210 734.6 424 100.0
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 1.0e-174 617.1 431 78.2
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 4.0e-78 296.2 389 50.6
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 7.1e-75 285.4 330 53.3
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 1.7e-68 264.2 356 48.9
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 2.4e-67 260.4 323 52.0
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 3.2e-67 260.0 334 49.7
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 2.1e-66 257.3 356 48.0
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 2.1e-66 257.3 357 48.5
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 4.6e-66 256.1 331 49.8
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 1.3e-65 254.6 379 46.2
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 6.6e-65 252.3 338 50.3
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 3.6e-63 246.5 393 45.8
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 4.7e-63 246.1 355 47.9
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 5.3e-62 242.7 383 44.6
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 1.3e-60 238.0 362 44.2
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.3e-60 238.0 438 40.9
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 2.2e-60 237.3 327 47.4
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 2.9e-60 236.9 325 49.5
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 4.9e-60 236.1 333 45.9
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 6.4e-60 235.7 335 46.3
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 1.4e-59 234.6 332 47.9
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 2.4e-59 233.8 397 41.1
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 7.1e-59 232.3 330 43.3
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 1.2e-58 231.5 311 47.6
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 3.5e-58 229.9 327 46.8
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 7.8e-58 228.8 327 45.3
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 2.3e-57 227.3 311 46.9
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 6.6e-57 225.7 404 42.1
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 1.1e-56 224.9 400 43.2
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 1.1e-56 224.9 317 44.2
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.5e-56 224.6 391 43.0
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 1.9e-56 224.2 430 39.1
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 3.3e-56 223.4 427 39.3
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 9.6e-56 221.9 318 46.2
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 1.3e-55 221.5 380 45.3
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 1.6e-55 221.1 319 46.1
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 2.1e-55 220.7 356 41.6
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 4.8e-55 219.5 356 41.9
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 4.8e-55 219.5 361 43.5
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.4e-54 218.0 312 44.2
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 1.8e-54 217.6 231 57.1
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 4.0e-54 216.5 411 40.4
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 6.9e-54 215.7 398 39.7
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 1.5e-53 214.5 431 38.1
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.5e-53 214.5 331 45.9
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.5e-53 214.5 331 45.9
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 2.6e-53 213.8 326 43.9
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 2.6e-53 213.8 405 39.3
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 3.4e-53 213.4 391 45.0
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 4.9e-52 209.5 329 41.9
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 6.4e-52 209.1 395 40.3
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 8.4e-52 208.8 332 40.7
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 2.4e-51 207.2 167 63.5
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 7.1e-51 205.7 340 43.5
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 7.1e-51 205.7 420 41.4
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 1.6e-50 204.5 320 45.0
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 2.1e-50 204.1 330 40.9
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 7.9e-50 202.2 411 40.6
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 1.0e-49 201.8 314 42.4
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 1.8e-49 201.1 322 46.9
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 3.9e-49 199.9 314 42.4
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 5.1e-49 199.5 250 51.6
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 6.7e-49 199.1 332 44.6
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 6.7e-49 199.1 327 39.1
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 6.7e-49 199.1 405 40.7
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 1.5e-48 198.0 412 38.3
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 2.5e-48 197.2 412 38.3
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 3.3e-48 196.8 423 39.7
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 4.3e-48 196.4 437 36.4
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 1.6e-47 194.5 325 44.3
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 1.6e-47 194.5 324 43.2
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 1.6e-47 194.5 324 43.2
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 2.8e-47 193.7 427 36.5
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.8e-47 193.7 443 37.0
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.8e-47 193.7 439 39.9
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 4.8e-47 193.0 441 38.1
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 6.2e-47 192.6 413 36.6
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 6.2e-47 192.6 327 39.1
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 6.2e-47 192.6 313 39.3
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 8.1e-47 192.2 365 41.9
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 1.1e-46 191.8 250 48.8
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 1.4e-46 191.4 389 36.5
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 2.4e-46 190.7 335 44.5
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 4.0e-46 189.9 259 45.9
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 5.3e-46 189.5 330 45.5
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 1.2e-45 188.3 257 46.7
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 1.2e-45 188.3 443 37.7
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 1.2e-45 188.3 413 36.3
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 4.5e-45 186.4 416 37.3
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 9.9e-45 185.3 417 37.4
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 1.9e-43 181.0 420 37.6
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 9.3e-43 178.7 421 37.5
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 3.1e-38 163.7 164 50.0
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 4.0e-38 163.3 336 39.0
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 8.4e-36 155.6 290 43.1
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 1.1e-35 155.2 265 41.5
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 7.1e-35 152.5 312 35.9
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 9.3e-35 152.1 248 39.9
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 6.7e-33 146.0 262 39.3
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 1.1e-32 145.2 179 41.9
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 2.8e-31 140.6 293 35.8
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 5.9e-29 132.9 163 45.4
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 5.9e-29 132.9 212 42.0
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 2.7e-26 124.0 244 35.2
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 2.7e-26 124.0 160 38.8
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 1.1e-24 118.6 220 34.5
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 1.1e-24 118.6 190 38.4
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 5.5e-19 99.8 70 67.1
Sabra10G0067600 Salix brachista HOM05D006873 ORTHO05D008668 9.4e-19 99.0 171 38.6
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 7.4e-16 89.4 250 26.8
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 1.7e-12 78.2 70 58.6
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 9.4e-11 72.4 50 68.0
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.4e-09 68.6 58 56.9
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.1e-08 65.5 58 55.2


User provided reference genes

Program Settings