Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 0.0e+00 1594.7 996 100.0
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 0.0e+00 1347.8 1010 87.7
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 0.0e+00 1079.3 924 67.0
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 2.9e-276 955.7 894 62.1
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 1.2e-271 940.3 926 57.8
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 1.8e-270 936.4 923 60.3
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 2.0e-269 932.9 931 59.1
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 2.6e-269 932.6 932 60.0
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 5.8e-269 931.4 936 59.0
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 7.5e-269 931.0 933 58.7
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 9.8e-269 930.6 928 59.1
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 1.7e-268 929.9 928 58.4
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 3.7e-268 928.7 937 58.4
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 6.4e-268 927.9 934 56.6
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 6.4e-268 927.9 936 58.8
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 8.3e-268 927.5 910 61.1
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.9e-264 916.4 942 56.9
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 6.2e-263 911.4 906 57.2
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 4.4e-261 905.2 920 57.7
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 8.3e-260 901.0 922 57.4
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 1.4e-259 900.2 926 56.6
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 1.9e-259 899.8 936 58.0
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 7.1e-259 897.9 926 57.1
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 3.5e-258 895.6 938 58.6
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 6.0e-258 894.8 940 55.4
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 7.8e-258 894.4 920 57.9
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.7e-257 893.3 927 56.5
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 5.1e-257 891.7 925 56.9
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.9e-256 889.8 920 58.2
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 7.3e-256 887.9 926 55.3
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 9.5e-256 887.5 926 56.0
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 1.6e-255 886.7 929 57.3
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 6.2e-255 884.8 926 56.6
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 1.8e-254 883.2 929 58.3
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 2.2e-252 876.3 925 57.3
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 2.4e-251 872.8 930 56.0
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 4.1e-251 872.1 933 55.9
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 1.2e-250 870.5 929 57.4
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 2.7e-250 869.4 915 56.2
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.8e-246 856.7 928 54.4
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 1.4e-243 847.0 933 55.3
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 4.2e-243 845.5 920 55.3
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.3e-239 833.9 1011 50.5
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.8e-238 830.1 920 53.6
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 3.1e-238 829.3 927 55.0
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 6.9e-238 828.2 931 52.2
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 5.8e-237 825.1 941 53.3
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 8.4e-236 821.2 923 52.8
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 1.1e-235 820.8 927 54.8
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 1.2e-234 817.4 944 53.1
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 1.6e-234 817.0 938 53.5
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 2.1e-234 816.6 939 54.7
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 2.7e-234 816.2 923 52.7
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 3.5e-234 815.8 936 53.5
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 1.5e-232 810.4 884 57.0
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 5.6e-232 808.5 937 50.9
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 7.4e-232 808.1 918 53.5
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 1.8e-230 803.5 927 53.0
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 2.4e-230 803.1 931 53.0
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 1.2e-229 800.8 923 51.8
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 1.5e-229 800.4 928 50.9
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 5.8e-229 798.5 930 52.5
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 1.3e-228 797.3 939 51.8
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 2.2e-228 796.6 928 53.2
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 5.5e-227 792.0 932 52.7
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 5.5e-227 792.0 928 53.6
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.2e-226 790.8 925 52.0
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 1.2e-226 790.8 945 52.2
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.6e-226 790.4 943 52.1
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 2.1e-226 790.0 927 51.2
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 6.0e-226 788.5 920 52.8
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 9.6e-224 781.2 867 55.4
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 9.6e-224 781.2 1004 48.5
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.0e-217 761.1 942 51.6
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 2.2e-215 753.4 925 51.5
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 5.3e-214 748.8 904 49.9
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 6.9e-214 748.4 964 50.4
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 1.7e-212 743.8 828 53.7
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 5.0e-212 742.3 915 49.8
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 8.5e-212 741.5 926 50.5
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 1.1e-211 741.1 868 51.3
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.4e-211 740.7 978 47.6
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 7.2e-211 738.4 936 49.5
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 9.4e-211 738.0 929 49.7
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 1.2e-210 737.6 923 47.9
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 1.6e-210 737.3 924 49.5
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 2.7e-210 736.5 926 48.3
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 3.6e-210 736.1 903 49.6
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 2.3e-209 733.4 929 48.4
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 2.3e-209 733.4 922 49.6
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 3.0e-209 733.0 929 48.9
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 1.1e-208 731.1 928 47.0
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 1.1e-208 731.1 928 47.0
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.5e-205 720.7 879 51.5
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 6.5e-204 715.3 948 47.6
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 7.0e-198 695.3 925 47.7
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 9.1e-198 694.9 923 46.7
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 3.8e-196 689.5 925 46.4
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 3.2e-195 686.4 925 45.9
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 1.6e-194 684.1 936 46.5
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 3.9e-193 679.5 939 46.1
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 4.4e-192 676.0 925 45.4
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 1.6e-189 667.5 646 57.1
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.2e-186 657.9 675 56.4
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 8.0e-186 655.2 485 69.7
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 3.5e-181 639.8 957 42.8
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.7e-175 620.9 954 42.9
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 3.5e-173 613.2 955 42.8
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.1e-166 590.1 483 63.4
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 4.5e-165 586.3 954 41.3
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 1.4e-158 564.7 478 61.5
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 4.7e-154 549.7 923 39.4
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 3.1e-153 547.0 937 40.2
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 2.7e-133 480.7 909 38.0
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.3e-122 445.3 596 48.7
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 5.5e-110 403.3 986 32.8
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 5.1e-100 370.2 483 46.0
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 1.4e-94 352.1 322 58.7
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 1.1e-83 315.8 296 57.4
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 5.7e-83 313.5 433 44.3
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 4.5e-80 303.9 439 44.0
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.1e-78 299.3 262 61.8
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 7.4e-75 286.6 413 49.2
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 6.5e-71 273.5 371 45.6
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 4.8e-66 257.3 399 45.4
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 3.8e-63 247.7 426 42.3
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 3.6e-61 241.1 171 69.0
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.2e-56 226.1 151 86.1
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 3.5e-56 224.6 151 86.1
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 7.7e-56 223.4 642 29.6
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.3e-54 218.0 407 40.5
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 5.6e-54 217.2 606 28.7
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 3.0e-52 211.5 168 61.3
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 2.0e-40 172.2 364 42.0
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.7e-39 169.1 380 39.2
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 2.3e-28 132.1 143 51.7
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 1.7e-23 115.9 77 75.3
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.5e-22 112.1 196 39.8
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 4.3e-22 111.3 88 62.5
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 7.3e-22 110.5 65 83.1
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.2e-19 103.2 84 54.8
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 2.0e-19 102.4 142 49.3
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 4.2e-17 94.7 94 59.6
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.9e-14 85.9 92 54.3
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 6.9e-12 77.4 86 51.2
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.3e-10 73.2 129 36.4
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 6.4e-10 70.9 112 48.2
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 6.0e-08 64.3 39 66.7
EL10Ac2g03784 Beta vulgaris HOM05D004199 ORTHO05D019838 6.6e-07 60.8 61 54.1
EL10Ac3g06366 Beta vulgaris HOM05D004199 ORTHO05D019838 6.6e-07 60.8 61 54.1
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 3.3e-06 58.5 69 43.5
EL10Ac7g17540 Beta vulgaris HOM05D000966 ORTHO05D019838 4.3e-06 58.2 60 53.3


User provided reference genes

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