Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.4e-254 882.5 455 100.0
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 5.8e-192 674.5 455 80.7
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 8.7e-188 660.6 467 77.7
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.8e-183 645.2 455 76.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 4.1e-161 572.0 458 70.3
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 8.5e-159 564.3 460 68.3
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 4.2e-158 562.0 460 68.0
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 4.6e-157 558.5 450 67.8
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 3.9e-156 555.4 459 68.4
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.5e-155 553.5 461 69.0
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.3e-154 550.4 453 67.1
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 1.4e-153 547.0 460 67.8
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 2.4e-153 546.2 425 69.6
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.1e-153 545.4 299 90.3
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.1e-153 545.4 458 67.2
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.3e-153 545.0 299 90.3
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 9.1e-153 544.3 459 67.3
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.2e-152 543.9 453 67.3
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.5e-152 543.5 299 90.3
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.0e-151 540.8 452 67.3
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.3e-151 540.4 425 68.9
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.7e-151 540.0 453 66.2
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 2.2e-151 539.7 441 66.9
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 3.8e-151 538.9 420 69.8
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 3.8e-151 538.9 430 69.1
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 3.8e-151 538.9 460 67.0
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 5.0e-151 538.5 442 66.7
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 6.5e-151 538.1 453 66.9
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 8.5e-151 537.7 461 65.9
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 8.5e-151 537.7 433 67.9
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.9e-150 536.6 419 69.7
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.9e-150 536.6 324 83.0
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 7.2e-150 534.6 299 89.6
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.6e-149 533.5 437 67.7
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.1e-149 533.1 299 89.0
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 7.9e-149 531.2 299 89.0
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.4e-148 530.4 454 66.5
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.8e-148 530.0 446 65.2
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.3e-148 529.6 421 69.1
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.9e-148 528.9 457 65.0
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 8.8e-148 527.7 299 87.6
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.6e-147 526.2 298 87.9
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 3.3e-147 525.8 299 87.6
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 4.4e-147 525.4 461 63.3
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 4.4e-147 525.4 457 65.6
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 5.7e-147 525.0 324 81.8
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 7.4e-147 524.6 435 67.1
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 9.7e-147 524.2 361 75.3
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 9.7e-147 524.2 412 67.0
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.3e-146 523.9 426 67.1
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 3.7e-146 522.3 435 66.4
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 4.8e-146 521.9 432 66.2
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.8e-146 521.9 298 86.9
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 6.3e-146 521.5 426 67.4
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 6.3e-146 521.5 298 87.2
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.1e-145 520.8 435 65.5
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.4e-145 520.4 299 86.0
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.4e-145 520.4 299 86.0
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.8e-145 520.0 298 86.9
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.4e-145 519.6 410 65.6
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 2.4e-145 519.6 430 66.5
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.4e-145 519.6 410 67.3
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 2.4e-145 519.6 430 66.5
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 3.1e-145 519.2 299 86.6
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 3.1e-145 519.2 299 86.0
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 3.1e-145 519.2 431 66.8
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 4.1e-145 518.8 411 66.7
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 5.3e-145 518.5 430 66.3
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.2e-144 517.3 299 85.6
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.5e-144 516.9 461 63.3
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-144 516.2 435 65.5
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 2.6e-144 516.2 430 66.3
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 7.7e-144 514.6 285 90.2
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.7e-144 514.6 426 67.4
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.0e-143 514.2 301 84.7
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.0e-143 514.2 435 65.1
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 2.9e-143 512.7 422 66.1
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.9e-143 512.7 322 81.7
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.8e-143 512.3 299 86.3
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 6.5e-143 511.5 454 63.0
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 6.5e-143 511.5 454 63.2
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.5e-143 511.5 301 84.7
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.5e-143 511.5 415 66.7
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 8.5e-143 511.1 457 63.9
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 8.5e-143 511.1 432 65.3
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.9e-142 510.0 456 63.4
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.9e-142 510.0 456 63.4
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.5e-142 509.6 410 66.3
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 3.2e-142 509.2 410 65.6
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 4.2e-142 508.8 447 63.8
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 5.5e-142 508.4 456 63.2
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.5e-142 508.4 427 65.3
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.2e-141 507.3 454 62.6
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.6e-141 506.9 447 63.8
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-141 506.9 298 84.6
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-141 506.9 298 84.6
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 2.1e-141 506.5 446 63.7
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 2.1e-141 506.5 459 62.5
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 2.1e-141 506.5 449 62.6
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 2.1e-141 506.5 444 64.0
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 2.1e-141 506.5 447 64.0
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 2.1e-141 506.5 442 64.0
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 2.7e-141 506.1 298 84.9
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.7e-141 505.4 419 65.6
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.0e-140 504.2 459 62.3
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 1.4e-140 503.8 301 82.4
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.8e-140 503.4 301 83.7
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.8e-140 503.4 301 83.7
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.8e-140 503.4 456 62.7
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.0e-140 502.7 440 64.1
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 3.0e-140 502.7 298 84.2
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 3.0e-140 502.7 298 84.2
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.0e-140 502.7 285 87.7
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 3.9e-140 502.3 299 82.9
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 6.7e-140 501.5 298 84.2
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 8.8e-140 501.1 459 62.1
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 8.8e-140 501.1 294 84.4
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.5e-139 500.4 301 82.4
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 2.6e-139 499.6 454 62.8
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-139 499.6 454 62.8
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.7e-139 498.4 460 61.5
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.7e-138 496.9 420 66.2
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.7e-138 496.9 450 60.9
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 2.8e-138 496.1 450 60.7
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.1e-137 494.2 447 63.1
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.8e-137 493.4 308 80.2
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 4.1e-137 492.3 299 81.9
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 7.0e-137 491.5 297 82.2
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 9.1e-137 491.1 299 81.9
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.7e-136 488.0 299 81.3
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 7.7e-136 488.0 544 55.5
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.3e-132 476.5 299 79.3
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 2.6e-131 473.0 436 61.0
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.1e-129 467.6 456 59.6
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.1e-129 467.6 302 75.8
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 2.4e-129 466.5 299 76.9
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 5.3e-129 465.3 299 76.3
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 5.9e-128 461.8 298 76.8
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 6.5e-127 458.4 454 59.0
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.5e-127 458.4 298 76.8
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 3.2e-126 456.1 300 75.3
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 9.4e-126 454.5 299 75.9
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.2e-125 454.1 266 85.3
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.6e-125 453.8 298 76.2
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.8e-124 450.3 299 74.2
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.6e-120 437.2 299 72.9
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 8.0e-117 424.9 409 60.6
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 3.6e-109 399.4 250 81.6
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 4.7e-109 399.1 295 69.5
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.7e-104 383.3 299 65.9
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 8.9e-100 368.2 291 64.6
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 3.4e-99 366.3 342 62.6
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 3.9e-95 352.8 338 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 4.7e-85 319.3 205 78.5
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.8e-76 290.8 391 48.8
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 2.7e-64 250.4 299 49.2
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 7.9e-64 248.8 168 73.8
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 3.9e-63 246.5 190 70.0
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 9.0e-60 235.3 136 86.8
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 9.3e-49 198.7 112 83.9
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 2.7e-48 197.2 113 88.5
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.7e-34 151.4 100 73.0
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.1e-33 148.7 99 73.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.1e-33 148.7 99 73.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 4.2e-33 146.7 117 65.8
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 7.2e-33 146.0 146 59.6
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 7.2e-33 146.0 146 59.6
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 7.2e-33 146.0 146 59.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 9.4e-33 145.6 98 72.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 4.7e-32 143.3 103 68.9
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.4e-31 141.7 277 33.6
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 6.7e-31 139.4 104 65.4
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 9.7e-30 135.6 103 65.0
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 4.5e-19 100.1 82 64.6
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 4.5e-19 100.1 67 80.6
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.5e-18 96.3 61 85.2
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 3.6e-16 90.5 49 91.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 4.2e-09 67.0 35 80.0
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 4.7e-08 63.5 35 77.1


User provided reference genes

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