Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.0e-229 799.7 395 100.0
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 2.5e-223 778.5 395 97.5
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 1.7e-187 659.4 361 88.4
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 6.4e-187 657.5 401 82.5
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 2.4e-186 655.6 395 84.1
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 2.4e-186 655.6 404 82.2
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 3.2e-186 655.2 399 82.7
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 4.1e-186 654.8 395 83.8
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 4.1e-186 654.8 363 87.3
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 1.3e-184 649.8 368 86.4
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 3.9e-184 648.3 403 81.4
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 3.9e-184 648.3 359 87.7
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 1.5e-183 646.4 395 81.5
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 1.5e-183 646.4 359 87.5
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.9e-183 646.0 393 82.4
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 4.3e-183 644.8 359 86.9
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 5.6e-183 644.4 402 80.6
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 5.6e-183 644.4 359 86.9
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 7.3e-183 644.0 391 82.1
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 2.1e-182 642.5 408 79.4
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 3.6e-182 641.7 396 80.8
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 3.6e-182 641.7 392 80.4
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.4e-181 639.8 379 83.6
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 2.3e-181 639.0 357 86.6
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 4.0e-181 638.3 419 77.6
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 5.2e-181 637.9 369 84.3
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 6.8e-181 637.5 385 81.3
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 6.8e-181 637.5 363 84.6
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.2e-180 636.7 377 82.8
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.5e-180 636.3 373 83.4
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 1.5e-180 636.3 400 79.5
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 2.2e-179 632.5 362 84.5
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 2.9e-179 632.1 359 85.2
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 4.9e-179 631.3 395 81.5
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 4.9e-179 631.3 383 81.7
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 2.4e-178 629.0 448 74.1
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 3.2e-178 628.6 424 75.9
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 4.6e-177 624.8 378 79.4
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 6.0e-177 624.4 380 80.5
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 3.9e-176 621.7 386 79.3
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 5.1e-176 621.3 364 82.4
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 6.6e-176 620.9 367 82.6
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 8.6e-176 620.5 391 80.3
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 1.1e-175 620.2 392 77.6
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 1.1e-175 620.2 380 79.2
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 1.9e-175 619.4 391 79.0
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 1.9e-175 619.4 358 83.0
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 2.5e-175 619.0 358 83.0
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 3.3e-175 618.6 392 77.3
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 5.6e-175 617.8 359 84.1
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 1.2e-174 616.7 383 79.4
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 1.2e-174 616.7 359 83.8
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 3.6e-174 615.1 394 76.6
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 6.2e-174 614.4 401 75.6
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 6.2e-174 614.4 401 75.6
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 6.2e-174 614.4 401 78.1
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 8.1e-174 614.0 358 82.4
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 4.0e-173 611.7 357 82.4
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 8.9e-173 610.5 380 78.2
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 8.9e-173 610.5 380 80.5
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 1.5e-172 609.8 365 83.6
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 9.9e-172 607.1 489 66.1
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.7e-171 606.3 409 76.0
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 2.9e-171 605.5 328 86.9
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.4e-170 603.2 389 76.9
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 1.4e-170 603.2 361 82.3
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 2.4e-170 602.4 359 81.1
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 4.6e-169 598.2 421 73.2
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 6.0e-169 597.8 376 78.2
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 1.3e-168 596.7 401 75.1
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 1.1e-167 593.6 367 79.6
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.1e-167 593.6 386 76.9
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.5e-167 593.2 401 75.6
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 3.3e-167 592.0 359 81.1
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 7.3e-167 590.9 357 81.5
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 9.6e-167 590.5 351 82.6
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 2.1e-166 589.3 393 75.6
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 3.6e-166 588.6 374 77.8
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.1e-165 587.0 382 77.2
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 5.2e-165 584.7 336 84.2
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 1.2e-164 583.6 358 79.9
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.5e-164 583.2 361 79.5
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 2.0e-164 582.8 402 73.1
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 5.8e-164 581.3 402 73.4
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.6e-164 580.9 357 79.8
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 2.2e-163 579.3 357 78.4
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 6.4e-163 577.8 378 76.2
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 3.2e-162 575.5 413 70.7
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 1.2e-161 573.5 359 78.3
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 2.7e-161 572.4 377 74.3
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.5e-161 572.0 327 84.1
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.5e-161 572.0 327 84.1
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 4.6e-161 571.6 363 76.6
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 1.9e-159 566.2 382 73.0
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 3.3e-159 565.5 397 72.8
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 3.3e-159 565.5 357 74.8
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.3e-159 565.1 428 68.7
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 3.6e-158 562.0 370 75.4
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 4.5e-156 555.1 377 74.8
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 6.4e-155 551.2 366 75.4
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 4.8e-150 535.0 458 61.1
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 9.0e-149 530.8 359 70.2
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.1e-146 523.9 537 54.2
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.0e-144 517.3 329 75.1
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 6.7e-144 514.6 556 52.9
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.1e-141 507.3 361 69.5
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 4.5e-140 501.9 389 67.1
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 5.3e-133 478.4 523 51.6
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 2.4e-117 426.4 334 65.0
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 9.1e-117 424.5 360 57.8
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 5.9e-116 421.8 429 55.2
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 4.4e-111 405.6 209 90.9
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 2.2e-110 403.3 203 95.1
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 3.8e-107 392.5 333 56.5
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.4e-104 384.0 364 54.1
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 2.4e-77 293.5 292 50.3
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.6e-60 237.7 320 39.4
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.8e-57 226.9 122 86.9
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 1.1e-56 224.9 114 93.0
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.6e-49 201.1 181 60.2
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 3.0e-43 180.3 111 78.4
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 1.3e-41 174.9 211 51.7
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 4.0e-32 143.3 103 67.0
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 1.3e-30 138.3 69 89.9
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 3.0e-27 127.1 85 72.9
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.9e-27 126.7 73 86.3
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 3.3e-26 123.6 83 72.3
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.9e-21 107.8 80 66.2
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 7.9e-20 102.4 53 84.9
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 7.7e-15 85.9 43 88.4
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 6.5e-14 82.8 62 69.4
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 2.0e-10 71.2 43 79.1
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 5.7e-10 69.7 70 57.1
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.7e-09 68.2 38 76.3
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 1.4e-08 65.1 44 68.2
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 8.5e-06 55.8 64 45.3


User provided reference genes

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