Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 1.2e-215 753.1 410 100.0
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.0e-142 510.8 411 76.6
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 4.5e-135 485.3 414 73.4
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 5.7e-122 441.8 431 65.0
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 9.7e-122 441.0 432 65.0
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 1.3e-121 440.7 419 64.4
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 3.7e-121 439.1 432 64.8
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 2.6e-119 433.0 418 64.1
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 2.2e-118 429.9 431 66.1
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.9e-118 429.5 420 62.9
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 1.1e-117 427.6 428 64.5
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 2.5e-117 426.4 412 64.8
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 5.5e-117 425.2 417 66.4
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 9.4e-117 424.5 424 64.2
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 4.7e-116 422.2 425 63.1
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 1.4e-115 420.6 420 62.1
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 1.2e-114 417.5 422 62.3
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.5e-114 417.2 425 61.6
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.0e-114 416.8 425 61.9
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.2e-113 413.3 421 61.3
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 6.3e-113 411.8 419 65.4
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 3.1e-112 409.5 419 63.2
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 4.1e-112 409.1 414 65.0
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 7.0e-112 408.3 424 63.2
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.2e-111 407.5 439 63.1
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 1.6e-111 407.1 433 59.4
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 3.5e-111 406.0 427 62.5
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 3.5e-111 406.0 427 62.5
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 4.5e-111 405.6 429 63.4
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 5.9e-111 405.2 424 62.7
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 7.7e-111 404.8 424 63.9
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 7.7e-111 404.8 426 62.2
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.0e-110 404.4 317 69.1
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 1.0e-110 404.4 407 63.6
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 1.3e-110 404.1 397 64.7
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 1.7e-110 403.7 427 61.1
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 2.9e-110 402.9 417 62.8
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.9e-110 402.9 427 62.3
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 3.8e-110 402.5 411 61.3
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 5.0e-110 402.1 424 64.2
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 5.0e-110 402.1 426 62.0
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 5.0e-110 402.1 426 62.2
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 6.5e-110 401.7 430 62.3
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 1.5e-109 400.6 431 59.6
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 1.9e-109 400.2 411 62.0
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 2.5e-109 399.8 394 64.2
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 2.5e-109 399.8 394 64.2
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 2.5e-109 399.8 426 62.2
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 4.2e-109 399.1 339 66.1
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 4.2e-109 399.1 339 66.1
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 5.5e-109 398.7 311 68.2
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 7.2e-109 398.3 417 61.6
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 7.2e-109 398.3 311 67.5
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 9.4e-109 397.9 317 67.2
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 9.4e-109 397.9 424 63.0
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 1.2e-108 397.5 407 63.6
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 1.6e-108 397.1 398 59.3
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 3.6e-108 396.0 425 61.2
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 4.7e-108 395.6 403 64.0
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 4.7e-108 395.6 314 66.9
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 8.0e-108 394.8 340 65.0
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 1.0e-107 394.4 308 67.9
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 1.4e-107 394.0 411 62.8
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 4.0e-107 392.5 384 66.4
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 5.2e-107 392.1 309 68.0
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 1.5e-106 390.6 423 63.4
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 4.4e-106 389.0 324 64.8
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 4.4e-106 389.0 423 60.8
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 7.5e-106 388.3 308 66.9
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 9.8e-106 387.9 307 67.1
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 9.8e-106 387.9 319 65.8
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 1.7e-105 387.1 341 64.8
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 2.8e-105 386.3 424 60.8
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 6.3e-105 385.2 299 67.9
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 6.3e-105 385.2 427 59.5
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 1.1e-104 384.4 309 66.7
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 2.4e-104 383.3 307 65.5
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 7.0e-104 381.7 317 65.9
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 9.1e-104 381.3 309 66.3
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 9.1e-104 381.3 393 62.6
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 3.5e-103 379.4 304 66.1
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 3.5e-103 379.4 307 65.1
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 3.5e-103 379.4 310 64.8
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 3.5e-103 379.4 301 66.8
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 1.7e-102 377.1 307 64.8
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 2.9e-102 376.3 425 60.2
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 2.5e-101 373.2 310 64.2
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 9.5e-101 371.3 423 59.6
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 9.5e-101 371.3 423 59.6
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 9.5e-101 371.3 312 63.5
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 1.4e-99 367.5 310 61.9
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 1.4e-99 367.5 310 61.9
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 1.8e-99 367.1 310 61.9
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 1.8e-99 367.1 310 61.9
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 6.8e-99 365.2 313 64.2
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 8.9e-99 364.8 313 63.9
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 2.4e-96 356.7 311 61.7
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 5.4e-96 355.5 298 64.1
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 7.0e-96 355.1 312 62.8
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.2e-95 354.4 328 60.4
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 1.0e-94 351.3 406 56.9
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 5.6e-93 345.5 287 65.9
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 6.2e-92 342.0 342 58.2
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 5.2e-91 339.0 311 59.8
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 2.0e-90 337.0 314 59.9
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 1.3e-89 334.3 670 41.9
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 1.2e-84 317.8 316 56.6
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 6.2e-84 315.5 380 57.6
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.4e-80 304.3 260 63.8
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 1.7e-78 297.4 287 56.4
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 5.1e-78 295.8 308 53.9
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 2.1e-76 290.4 304 54.6
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 1.7e-73 280.8 431 51.3
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 6.4e-73 278.9 244 62.3
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 7.3e-69 265.4 417 46.5
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 1.1e-67 261.5 294 48.6
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 3.2e-64 250.0 252 56.3
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 2.1e-63 247.3 268 52.2
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 9.6e-61 238.4 286 50.7
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 2.8e-60 236.9 250 62.4
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 1.7e-57 227.6 227 55.5
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 2.7e-55 220.3 243 60.9
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.0e-54 218.4 217 70.0
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 6.6e-54 215.7 246 64.2
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 3.3e-53 213.4 114 92.1
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 7.3e-53 212.2 108 95.4
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.6e-52 211.1 108 92.6
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 2.8e-52 210.3 211 56.4
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 1.8e-51 207.6 107 94.4
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 4.0e-51 206.5 266 45.9
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.1e-47 194.1 107 87.9
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 2.7e-47 193.7 114 82.5
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 7.9e-47 192.2 108 88.0
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 2.5e-45 187.2 142 68.3
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 2.1e-44 184.1 92 95.7
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 6.9e-43 179.1 224 61.2
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 1.7e-41 174.5 95 90.5
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 1.4e-40 171.4 95 89.5
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 2.1e-39 167.5 90 86.7
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.3e-38 164.9 138 63.8
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 3.3e-37 160.2 200 58.0
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 2.1e-31 141.0 83 81.9
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 3.4e-26 123.6 65 89.2
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 3.4e-26 123.6 65 89.2
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 8.8e-22 109.0 85 64.7
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 2.4e-19 100.9 169 53.8
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 1.0e-17 95.5 48 93.8
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 1.2e-15 88.6 143 54.5
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.1e-11 75.5 49 73.5
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 5.9e-10 69.7 38 89.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 1.0e-09 68.9 38 86.8
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 1.0e-09 68.9 102 46.1
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 1.7e-09 68.2 162 53.1
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 8.5e-09 65.9 147 52.4
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 6.1e-07 59.7 45 64.4
Oeu041477.1 Olea europaea HOM05D004689 ORTHO05D290631 1.8e-06 58.2 45 60.0


User provided reference genes

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