Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 1.3e-139 499.6 240 100.0
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 5.0e-126 454.5 241 90.9
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 3.4e-106 388.7 241 75.1
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 1.9e-101 372.9 222 74.8
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 5.2e-99 364.8 231 71.9
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 8.8e-99 364.0 230 73.0
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 2.0e-98 362.8 230 73.0
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 4.4e-98 361.7 233 70.4
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.7e-97 359.8 226 71.2
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 3.7e-97 358.6 239 69.0
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 3.7e-97 358.6 237 70.0
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 8.3e-97 357.5 218 75.2
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 1.4e-96 356.7 228 71.1
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 1.4e-96 356.7 232 70.7
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 3.1e-96 355.5 217 74.7
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 9.2e-96 354.0 237 69.2
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.6e-95 353.2 237 69.6
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 2.0e-95 352.8 241 68.5
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 2.7e-95 352.4 218 72.9
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 5.9e-95 351.3 233 70.0
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 7.8e-95 350.9 228 70.6
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 1.0e-94 350.5 235 68.9
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 1.7e-94 349.7 225 69.8
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 2.3e-94 349.4 221 72.9
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 3.8e-94 348.6 220 72.3
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 5.0e-94 348.2 238 69.3
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 1.1e-93 347.1 230 70.0
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 1.5e-93 346.7 228 70.2
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 1.5e-93 346.7 218 71.1
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 2.5e-93 345.9 229 67.7
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 2.5e-93 345.9 223 71.3
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 4.3e-93 345.1 218 72.5
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 5.6e-93 344.7 231 69.3
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 9.5e-93 344.0 233 69.5
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 6.1e-92 341.3 229 68.6
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 8.0e-92 340.9 219 72.1
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 1.0e-91 340.5 235 68.5
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 1.8e-91 339.7 238 67.2
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 8.9e-91 337.4 237 66.2
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 4.4e-90 335.1 221 70.1
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 4.4e-90 335.1 221 70.1
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 4.4e-90 335.1 221 70.1
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 4.4e-90 335.1 221 70.1
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 4.4e-90 335.1 227 68.3
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 5.7e-90 334.7 237 65.8
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 5.7e-90 334.7 245 64.5
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 5.7e-90 334.7 245 64.5
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 7.5e-90 334.3 230 68.3
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 7.5e-90 334.3 228 67.5
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 1.1e-88 330.5 219 68.9
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 1.8e-88 329.7 232 65.9
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 4.1e-88 328.6 204 72.1
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 7.0e-88 327.8 215 69.3
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 7.0e-88 327.8 240 63.3
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.2e-87 327.0 226 65.5
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 1.6e-87 326.6 218 67.0
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.6e-87 326.6 202 73.3
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 4.6e-87 325.1 222 67.6
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 7.8e-87 324.3 217 69.6
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 7.8e-87 324.3 233 66.5
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 7.8e-87 324.3 234 66.2
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 2.3e-86 322.8 224 66.1
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 2.3e-86 322.8 225 64.4
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 2.3e-86 322.8 207 71.5
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 3.0e-86 322.4 222 67.1
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 3.9e-86 322.0 218 66.5
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 6.6e-86 321.2 204 70.6
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 8.6e-86 320.9 229 65.5
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 1.1e-85 320.5 224 65.6
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 1.9e-85 319.7 227 64.8
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 3.3e-85 318.9 238 64.7
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 5.6e-85 318.2 227 64.8
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 9.5e-85 317.4 240 62.9
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 1.2e-84 317.0 220 66.4
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 1.6e-84 316.6 222 68.0
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 6.2e-84 314.7 221 65.6
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 1.8e-83 313.2 204 70.6
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 3.1e-83 312.4 240 60.4
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 5.2e-83 311.6 216 64.8
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 8.9e-83 310.8 217 66.8
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 2.4e-80 302.8 226 62.8
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 1.6e-79 300.1 248 59.3
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 5.0e-78 295.0 227 63.0
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 7.3e-77 291.2 192 70.3
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 1.8e-75 286.6 190 66.3
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 1.3e-73 280.4 167 77.8
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 2.1e-71 273.1 153 75.8
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 2.3e-70 269.6 170 74.7
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 3.3e-69 265.8 150 76.7
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 5.6e-69 265.0 168 75.0
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 8.1e-68 261.2 164 69.5
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 1.4e-67 260.4 224 58.0
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 1.4e-67 260.4 192 63.0
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 8.6e-62 241.1 157 66.2
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 1.6e-60 236.9 158 67.7
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 2.4e-59 233.0 165 67.3
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.6e-58 229.6 169 65.1
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 2.9e-49 199.5 306 35.9
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 3.5e-47 192.6 163 60.7
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 7.4e-45 184.9 225 44.4
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 2.6e-42 176.4 114 75.4
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 7.6e-42 174.9 264 37.1
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 1.0e-33 147.9 103 60.2
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 2.9e-33 146.4 176 42.6
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 5.5e-32 142.1 110 67.3
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 1.6e-31 140.6 94 61.7
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 7.9e-31 138.3 187 39.0
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 4.5e-18 95.9 70 70.0
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 4.5e-18 95.9 60 81.7
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.2e-15 87.8 128 35.9
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 1.2e-15 87.8 51 66.7
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 1.6e-15 87.4 96 51.0
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 8.8e-14 81.6 169 32.0
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 8.2e-12 75.1 72 48.6
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 1.1e-11 74.7 128 35.2
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 3.1e-11 73.2 168 33.3
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 2.6e-10 70.1 60 48.3
PRCOL_00000148 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.7e-09 67.4 189 25.9
Cfa024972 Carpinus fangiana HOM05D006551 ORTHO05D043702 2.5e-08 63.5 125 33.6
PRCOL_00002998 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 7.2e-08 62.0 125 34.4


User provided reference genes

Program Settings