Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 2.5e-178 628.6 312 100.0
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.4e-157 559.7 312 90.4
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 2.5e-154 548.9 312 88.5
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 2.0e-151 539.3 312 86.2
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 7.6e-151 537.3 312 84.9
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 1.1e-149 533.5 312 83.7
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 1.1e-149 533.5 312 84.6
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 3.2e-149 531.9 312 84.3
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 3.2e-149 531.9 312 84.3
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 4.2e-149 531.6 312 83.7
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 4.2e-149 531.6 312 83.7
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 4.2e-149 531.6 312 84.9
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.6e-148 529.6 312 83.3
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.6e-148 529.6 312 83.7
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 2.1e-148 529.3 312 84.3
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 1.3e-147 526.6 312 82.7
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 1.7e-147 526.2 309 84.5
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 1.7e-147 526.2 312 84.3
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 1.7e-147 526.2 312 83.7
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 2.3e-147 525.8 312 82.7
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 3.0e-147 525.4 312 83.0
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 3.0e-147 525.4 311 83.0
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 3.0e-147 525.4 312 82.7
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 3.9e-147 525.0 312 83.0
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 6.6e-147 524.2 312 83.7
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 6.6e-147 524.2 312 83.0
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 8.7e-147 523.9 312 82.1
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 8.7e-147 523.9 309 84.1
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 8.7e-147 523.9 312 82.1
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 8.7e-147 523.9 312 82.4
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.1e-146 523.5 309 83.8
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.1e-146 523.5 312 82.1
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 1.5e-146 523.1 312 82.4
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 1.9e-146 522.7 312 82.1
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 2.5e-146 522.3 309 83.2
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 4.3e-146 521.5 312 83.7
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 5.6e-146 521.2 308 82.8
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 9.6e-146 520.4 312 82.1
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 1.6e-145 519.6 313 82.7
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 2.1e-145 519.2 312 81.7
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 2.1e-145 519.2 309 82.2
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 2.8e-145 518.8 312 81.1
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 3.6e-145 518.5 312 81.4
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 4.8e-145 518.1 311 81.7
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 4.8e-145 518.1 310 81.0
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 6.2e-145 517.7 309 82.8
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 6.2e-145 517.7 309 82.2
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 8.1e-145 517.3 309 83.2
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 1.4e-144 516.5 312 81.1
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 1.4e-144 516.5 309 82.8
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 1.8e-144 516.2 319 79.6
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 4.0e-144 515.0 314 79.9
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 6.9e-144 514.2 312 80.8
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 9.0e-144 513.8 309 81.6
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.2e-143 513.5 312 81.4
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 1.5e-143 513.1 312 80.4
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 2.0e-143 512.7 310 81.3
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 2.6e-143 512.3 312 80.1
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 3.4e-143 511.9 312 81.1
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 4.5e-143 511.5 309 81.2
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 5.8e-143 511.1 312 81.1
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 5.8e-143 511.1 312 81.1
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 7.6e-143 510.8 311 80.7
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 2.2e-142 509.2 313 80.5
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 2.9e-142 508.8 312 81.4
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 2.9e-142 508.8 312 79.2
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 2.9e-142 508.8 311 80.4
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 2.9e-142 508.8 311 80.1
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 2.9e-142 508.8 317 80.1
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 4.9e-142 508.1 311 80.4
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 6.4e-142 507.7 312 79.8
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 6.4e-142 507.7 308 81.2
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 8.4e-142 507.3 309 81.2
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 8.4e-142 507.3 312 79.2
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 1.1e-141 506.9 309 79.6
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 1.1e-141 506.9 309 79.9
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 1.1e-141 506.9 316 79.7
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.1e-141 506.9 312 80.4
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.1e-141 506.9 312 80.4
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.4e-141 506.5 309 80.9
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.4e-141 506.5 309 80.9
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 1.9e-141 506.1 294 85.4
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 1.9e-141 506.1 313 79.6
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 3.2e-141 505.4 313 79.6
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 3.2e-141 505.4 312 79.2
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 7.1e-141 504.2 311 79.4
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 7.1e-141 504.2 309 80.6
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 7.1e-141 504.2 309 80.6
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 9.3e-141 503.8 311 79.4
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 2.1e-140 502.7 314 79.3
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 2.7e-140 502.3 293 85.0
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 6.0e-140 501.1 340 74.1
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 1.3e-139 500.0 312 79.8
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 2.3e-139 499.2 293 84.6
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 3.0e-139 498.8 312 79.5
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 3.9e-139 498.4 312 79.2
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 3.9e-139 498.4 293 84.6
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 8.7e-139 497.3 311 79.7
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 1.9e-138 496.1 312 78.8
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 3.3e-138 495.4 293 83.3
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 4.3e-138 495.0 295 82.4
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 4.8e-137 491.5 293 82.9
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 6.2e-137 491.1 294 83.0
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 6.2e-137 491.1 297 80.1
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.8e-136 489.6 311 78.8
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 3.4e-135 485.3 294 82.0
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 1.0e-134 483.8 307 77.9
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 2.9e-134 482.3 314 78.3
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 4.9e-134 481.5 294 80.6
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 6.5e-134 481.1 301 80.4
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 8.4e-134 480.7 311 77.5
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.4e-133 479.9 384 65.6
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 2.7e-132 475.7 293 81.2
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 3.5e-132 475.3 317 77.0
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 3.5e-132 475.3 317 77.0
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 6.0e-132 474.6 313 75.7
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.5e-130 469.9 333 72.4
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.3e-130 468.8 326 72.7
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 7.4e-130 467.6 293 79.9
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 3.7e-129 465.3 289 80.6
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 4.8e-129 464.9 280 81.4
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 8.2e-129 464.2 276 83.0
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 3.2e-125 452.2 274 80.7
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 9.3e-125 450.7 274 80.3
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 3.6e-124 448.7 312 73.1
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 7.9e-124 447.6 307 72.0
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.0e-123 447.2 298 74.5
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 1.0e-123 447.2 309 73.5
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 3.3e-122 442.2 259 84.2
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 7.4e-122 441.0 292 71.9
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 9.7e-122 440.7 268 80.6
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 2.2e-121 439.5 345 66.1
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 2.6e-119 432.6 304 67.8
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 3.4e-119 432.2 259 81.5
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 1.4e-117 426.8 263 80.6
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 4.6e-116 421.8 311 70.4
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.4e-112 409.5 391 58.3
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 3.1e-112 409.1 220 89.5
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 1.3e-110 403.7 296 71.3
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 5.2e-107 391.7 311 62.7
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 2.2e-102 376.3 400 54.5
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 8.0e-100 367.9 281 68.0
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 3.0e-99 365.9 191 89.0
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 3.2e-93 345.9 219 78.1
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 1.4e-91 340.5 279 64.9
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 1.4e-91 340.5 173 93.6
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 7.5e-82 308.1 299 56.9
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-77 292.0 172 79.1
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 2.1e-76 290.0 266 59.8
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.5e-69 266.5 194 70.6
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 5.4e-64 248.8 282 45.0
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 3.9e-54 216.1 203 59.6
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-52 210.3 136 77.2
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-52 210.3 136 77.2
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 2.7e-39 166.8 142 65.5
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 3.5e-31 139.8 129 61.2
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 9.3e-24 115.2 100 60.0
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 2.1e-23 114.0 72 68.1
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 5.1e-22 109.4 88 64.8
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 5.1e-22 109.4 88 64.8
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.6e-20 104.4 112 50.9
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 7.1e-16 89.0 86 54.7
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.6e-15 87.8 51 76.5
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 1.3e-14 84.7 46 87.0
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.4e-11 74.7 90 52.2
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.4e-11 74.7 90 52.2
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 5.9e-10 69.3 66 57.6
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.9e-08 64.3 39 82.1
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 2.5e-08 63.9 46 63.0
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 6.7e-06 55.8 32 78.1


User provided reference genes

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