Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.1e-240 836.3 441 100.0
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 5.8e-189 664.5 441 81.9
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 4.6e-186 654.8 467 77.7
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.7e-183 645.2 441 79.4
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 4.2e-155 552.0 444 70.0
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.2e-154 550.4 436 68.6
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 3.6e-154 548.9 445 69.2
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.1e-152 543.9 441 69.8
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.5e-152 543.5 443 67.9
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.5e-152 543.5 443 67.7
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 9.7e-152 540.8 439 67.4
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 2.8e-151 539.3 445 67.9
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.4e-150 537.0 445 67.9
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 3.1e-150 535.8 432 67.8
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 5.3e-150 535.0 432 67.1
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.5e-149 533.5 299 88.3
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 2.0e-149 533.1 391 72.1
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.0e-149 533.1 299 88.3
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 2.6e-149 532.7 422 69.0
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 5.9e-149 531.6 417 69.5
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.9e-149 531.6 299 88.3
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.0e-148 530.8 447 66.4
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.0e-148 530.8 427 67.7
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 2.2e-148 529.6 441 66.4
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 3.8e-148 528.9 406 70.2
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 5.0e-148 528.5 442 66.7
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 8.5e-148 527.7 438 67.4
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.1e-147 527.3 412 69.2
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.1e-147 527.3 391 71.1
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.9e-147 526.6 389 71.0
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 4.2e-147 525.4 437 67.0
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 7.2e-147 524.6 446 67.7
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 7.2e-147 524.6 299 87.3
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 2.7e-146 522.7 395 70.9
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.7e-146 522.7 299 87.3
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 3.6e-146 522.3 443 65.7
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 3.6e-146 522.3 441 66.9
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.0e-145 520.8 421 67.0
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 3.0e-145 519.2 396 69.4
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 3.9e-145 518.8 299 86.3
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.1e-144 517.3 418 68.7
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.1e-144 517.3 421 68.2
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.1e-144 517.3 299 87.0
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.5e-144 516.9 419 66.6
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.0e-144 516.5 407 69.5
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.0e-144 516.5 440 65.7
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 2.6e-144 516.2 398 68.3
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.7e-144 515.0 299 85.6
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 7.4e-144 514.6 399 68.2
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 9.7e-144 514.2 400 67.8
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 9.7e-144 514.2 417 66.9
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.7e-144 514.2 401 68.8
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 2.2e-143 513.1 299 84.9
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.2e-143 513.1 388 70.9
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 2.2e-143 513.1 421 67.2
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 2.8e-143 512.7 298 85.6
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.7e-143 512.3 399 67.7
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 3.7e-143 512.3 390 69.0
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 4.8e-143 511.9 439 65.4
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 4.8e-143 511.9 388 70.9
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.4e-142 510.4 447 64.2
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.4e-142 510.4 416 67.3
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.4e-142 510.4 418 67.0
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.8e-142 510.0 299 85.3
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 2.4e-142 509.6 417 67.4
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.4e-142 509.6 392 68.9
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.4e-142 509.6 392 68.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.3e-142 508.4 408 68.4
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.0e-142 508.1 413 67.1
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 9.1e-142 507.7 434 65.2
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.1e-142 507.7 424 66.0
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 9.1e-142 507.7 440 64.1
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.6e-141 506.9 332 78.9
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.6e-141 506.9 416 66.6
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.6e-141 506.9 395 68.9
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 2.0e-141 506.5 421 66.3
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.5e-141 505.8 424 65.6
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 3.5e-141 505.8 321 80.1
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 3.5e-141 505.8 416 66.3
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 3.5e-141 505.8 387 69.5
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 4.5e-141 505.4 396 67.9
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 4.5e-141 505.4 301 83.4
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.9e-141 505.0 301 83.7
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 7.7e-141 504.6 322 80.1
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 1.0e-140 504.2 441 64.2
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.0e-140 504.2 441 64.2
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.3e-140 503.8 299 84.6
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.7e-140 503.4 322 79.8
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 2.9e-140 502.7 285 88.4
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.5e-140 501.5 405 66.9
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.1e-139 500.7 432 64.4
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 2.5e-139 499.6 442 63.3
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 3.2e-139 499.2 426 64.3
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.2e-139 498.8 441 64.2
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 4.2e-139 498.8 436 64.0
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 5.5e-139 498.4 432 64.8
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 5.5e-139 498.4 432 64.4
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 5.5e-139 498.4 429 65.0
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 5.5e-139 498.4 432 64.8
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.2e-139 498.0 298 83.2
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.2e-139 498.0 298 83.2
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 7.2e-139 498.0 432 64.8
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.6e-138 496.9 442 63.1
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-138 496.9 437 63.4
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 3.6e-138 495.7 317 79.5
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 3.6e-138 495.7 445 63.4
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 4.7e-138 495.4 435 63.0
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 6.1e-138 495.0 442 63.6
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.0e-137 494.2 429 64.3
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.8e-137 493.4 301 82.4
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.8e-137 493.4 301 82.4
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 2.3e-137 493.0 396 66.9
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 4.0e-137 492.3 406 65.0
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 6.8e-137 491.5 432 63.9
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 6.8e-137 491.5 432 63.9
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.8e-137 491.5 285 85.6
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 6.8e-137 491.5 423 64.3
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 8.8e-137 491.1 432 63.7
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.2e-136 490.7 409 65.0
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.5e-136 490.3 415 63.9
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 1.5e-136 490.3 385 68.1
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 2.0e-136 490.0 301 81.1
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.6e-136 489.6 430 62.8
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 9.7e-136 487.6 415 63.4
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 3.7e-135 485.7 432 63.2
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 4.8e-135 485.3 299 81.3
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 7.0e-134 481.5 406 66.3
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 4.5e-133 478.8 297 80.8
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.9e-133 478.4 299 79.9
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 7.7e-133 478.0 496 57.1
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.7e-132 476.9 299 79.6
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 2.1e-130 469.9 422 63.0
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.1e-130 468.4 299 78.3
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 4.1e-126 455.7 432 60.4
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 7.0e-126 454.9 298 76.2
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 7.0e-126 454.9 302 73.8
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 1.6e-125 453.8 416 59.9
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 5.9e-125 451.8 423 59.1
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.9e-124 449.5 300 74.3
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 8.6e-124 448.0 298 75.2
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 3.3e-123 446.0 264 84.8
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 5.5e-123 445.3 429 60.6
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.6e-122 443.7 324 70.7
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.1e-122 443.4 298 74.5
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.5e-120 437.2 299 71.9
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 3.7e-119 432.6 299 72.6
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 5.0e-116 422.2 371 64.4
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.9e-107 393.7 289 69.6
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 5.2e-105 385.6 287 72.1
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 4.1e-102 375.9 299 65.6
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 4.7e-98 362.5 291 64.3
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 5.2e-97 359.0 330 63.0
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 3.5e-93 346.3 327 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 8.7e-84 315.1 217 74.7
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 2.3e-76 290.4 377 50.4
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 2.6e-64 250.4 299 49.8
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.7e-63 247.7 168 74.4
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 2.1e-61 240.7 139 86.3
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.1e-58 230.7 229 58.5
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 7.7e-48 195.7 113 87.6
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 2.9e-47 193.7 112 82.1
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.8e-33 147.9 146 60.3
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.8e-33 147.9 146 60.3
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.8e-33 147.9 146 60.3
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.2e-32 145.2 101 70.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 7.7e-32 142.5 99 71.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 7.7e-32 142.5 99 71.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 5.0e-31 139.8 99 70.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 6.5e-31 139.4 98 70.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 1.1e-30 138.7 103 67.0
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.1e-29 134.4 104 63.5
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 6.1e-29 132.9 277 32.9
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 5.2e-28 129.8 103 62.1
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.7e-18 97.1 69 75.4
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 4.8e-18 96.7 64 73.4
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 4.1e-17 93.6 61 82.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 3.5e-16 90.5 49 91.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 4.5e-08 63.5 35 77.1
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 5.0e-07 60.1 35 74.3


User provided reference genes

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