Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.3e-129 466.5 241 100.0
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.4e-40 170.6 92 93.5
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 7.2e-32 141.7 89 79.8
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 7.2e-32 141.7 92 76.1
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 3.6e-31 139.4 94 73.4
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.6e-31 139.4 92 75.0
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 7.9e-31 138.3 92 75.0
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 2.3e-30 136.7 89 77.5
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 2.3e-30 136.7 92 73.9
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 6.7e-30 135.2 92 72.8
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 2.0e-29 133.7 92 72.8
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.6e-29 133.3 89 74.2
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.4e-29 132.5 92 71.7
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 5.7e-29 132.1 89 73.0
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 7.4e-29 131.7 89 75.3
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 9.7e-29 131.3 89 74.2
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.3e-28 131.0 89 73.0
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.7e-28 130.6 89 71.9
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.7e-28 130.6 89 73.0
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.8e-28 129.8 89 71.9
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 6.3e-28 128.6 89 70.8
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 6.3e-28 128.6 92 71.7
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 6.3e-28 128.6 92 71.7
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 6.3e-28 128.6 89 68.5
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.1e-27 127.9 89 70.8
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.4e-27 127.5 89 71.9
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 1.8e-27 127.1 89 71.9
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.4e-27 126.7 89 71.9
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.4e-27 126.7 89 71.9
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.4e-27 126.7 104 62.5
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.4e-27 126.7 89 69.7
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.4e-27 126.7 89 70.8
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 2.4e-27 126.7 91 69.2
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 3.1e-27 126.3 89 68.5
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 3.1e-27 126.3 89 69.7
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.1e-27 126.3 89 67.4
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 3.1e-27 126.3 89 69.7
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 5.3e-27 125.6 89 67.4
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 6.9e-27 125.2 89 68.5
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 9.1e-27 124.8 89 68.5
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 9.1e-27 124.8 91 68.1
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.2e-26 124.4 89 68.5
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.5e-26 124.0 89 67.4
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.5e-26 124.0 89 67.4
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.0e-26 123.6 89 66.3
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 2.6e-26 123.2 89 68.5
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 4.5e-26 122.5 89 69.7
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 4.5e-26 122.5 86 68.6
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 4.5e-26 122.5 89 68.5
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 4.5e-26 122.5 89 67.4
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 5.9e-26 122.1 103 58.3
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 5.9e-26 122.1 103 58.3
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 5.9e-26 122.1 86 68.6
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 5.9e-26 122.1 89 66.3
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 7.7e-26 121.7 93 67.7
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 7.7e-26 121.7 89 68.5
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.0e-25 121.3 89 66.3
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.0e-25 121.3 89 65.2
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.0e-25 121.3 91 68.1
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.3e-25 120.9 85 70.6
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.3e-25 120.9 89 67.4
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.7e-25 120.6 89 66.3
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 2.9e-25 119.8 89 64.0
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 3.8e-25 119.4 89 66.3
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 6.5e-25 118.6 108 57.4
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.1e-24 117.9 89 65.2
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.1e-24 117.9 89 67.4
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.4e-24 117.5 90 66.7
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.4e-24 117.5 107 57.0
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.4e-24 117.5 89 66.3
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.9e-24 117.1 89 62.9
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.9e-24 117.1 88 65.9
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.5e-24 116.7 89 66.3
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.5e-24 116.7 85 65.9
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 2.5e-24 116.7 89 65.2
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.5e-24 116.7 92 64.1
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 3.2e-24 116.3 103 61.2
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 9.4e-24 114.8 106 56.6
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 9.4e-24 114.8 88 64.8
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 9.4e-24 114.8 99 59.6
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.1e-23 113.6 92 63.0
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 2.7e-23 113.2 89 60.7
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 2.7e-23 113.2 89 61.8
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 4.7e-23 112.5 78 66.7
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.7e-23 112.5 89 62.9
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 6.1e-23 112.1 89 65.2
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 7.9e-23 111.7 89 61.8
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.0e-22 111.3 91 62.6
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.0e-22 111.3 91 62.6
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.0e-22 111.3 91 62.6
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.0e-22 111.3 91 59.3
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.8e-22 110.5 92 59.8
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.8e-22 110.5 89 60.7
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 2.3e-22 110.2 89 61.8
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 2.3e-22 110.2 89 64.0
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.3e-22 110.2 89 61.8
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 3.0e-22 109.8 91 61.5
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 3.0e-22 109.8 91 61.5
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.1e-21 107.8 89 59.6
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.1e-21 107.8 89 60.7
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.5e-21 107.5 72 72.2
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.5e-21 107.5 96 56.2
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 2.0e-21 107.1 86 61.6
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 2.6e-21 106.7 96 56.2
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 2.6e-21 106.7 89 60.7
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 4.4e-21 105.9 89 62.9
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 4.4e-21 105.9 92 63.0
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 4.4e-21 105.9 89 59.6
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 4.4e-21 105.9 89 59.6
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 4.4e-21 105.9 89 59.6
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 5.7e-21 105.5 92 57.6
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 5.7e-21 105.5 92 57.6
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.3e-20 104.4 102 56.9
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.3e-20 104.4 102 56.9
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.3e-20 104.4 102 56.9
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 2.2e-20 103.6 89 60.7
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 2.8e-20 103.2 89 57.3
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 3.7e-20 102.8 105 51.4
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 8.2e-20 101.7 89 62.9
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 1.1e-19 101.3 72 68.1
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 1.4e-19 100.9 104 54.8
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.8e-19 100.5 90 57.8
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 3.1e-19 99.8 90 57.8
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 4.1e-19 99.4 83 60.2
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.2e-18 97.8 89 56.2
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.6e-18 97.4 89 52.8
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.6e-18 97.4 89 52.8
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.6e-18 97.4 98 53.1
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.0e-18 97.1 113 47.8
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 3.5e-18 96.3 89 55.1
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 7.7e-18 95.1 101 51.5
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.9e-17 93.2 63 68.3
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 2.9e-17 93.2 90 52.2
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 6.5e-17 92.0 105 47.6
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.2e-16 89.4 63 66.7
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 7.2e-16 88.6 92 46.7
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 5.2e-14 82.4 91 48.4
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 6.7e-14 82.0 65 63.1
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.6e-13 80.1 66 62.1
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 5.7e-13 79.0 89 42.7
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 6.3e-12 75.5 92 44.6
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 1.1e-11 74.7 70 55.7
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 2.0e-10 70.5 97 38.1
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.0e-10 70.5 53 66.0
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 2.2e-09 67.0 87 41.4
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 3.2e-08 63.2 40 75.0
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 7.2e-08 62.0 81 43.2
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.7e-07 60.1 44 65.9
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 3.6e-07 59.7 43 62.8
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 4.7e-07 59.3 50 56.0
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.4e-06 57.8 90 38.9
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 2.3e-06 57.0 59 52.5
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 4.0e-06 56.2 37 73.0


User provided reference genes

Program Settings