Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 2.0e-173 612.5 337 100.0
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.6e-167 592.8 337 96.4
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.4e-163 579.7 337 94.4
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.8e-158 562.8 338 92.0
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 3.1e-158 562.0 337 91.1
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 5.3e-158 561.2 337 91.4
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 9.0e-158 560.5 337 91.4
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 9.0e-158 560.5 337 91.4
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 1.7e-156 556.2 337 90.8
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 2.9e-156 555.4 337 90.8
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 2.9e-156 555.4 372 85.2
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 5.0e-156 554.7 337 89.3
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 6.5e-156 554.3 337 91.4
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 2.5e-155 552.4 337 89.6
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 4.2e-155 551.6 337 90.8
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 3.6e-154 548.5 337 89.3
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 4.6e-154 548.1 337 88.7
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.0e-153 547.0 337 84.9
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.0e-153 547.0 349 88.0
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 1.0e-153 547.0 337 90.2
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.8e-153 546.2 338 89.1
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 8.8e-153 543.9 337 88.4
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.1e-152 543.5 337 88.1
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 5.7e-152 541.2 338 86.7
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 7.4e-152 540.8 337 88.1
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 9.7e-152 540.4 339 87.9
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 9.7e-152 540.4 337 87.5
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.3e-151 540.0 337 88.1
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.3e-151 540.0 337 88.7
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 1.7e-151 539.7 338 86.1
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 2.2e-151 539.3 337 87.8
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 2.2e-151 539.3 337 88.7
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 2.8e-151 538.9 339 88.5
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 2.8e-151 538.9 337 87.8
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 8.2e-151 537.3 336 87.2
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 8.2e-151 537.3 336 87.2
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 1.4e-150 536.6 338 88.8
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 1.4e-150 536.6 338 87.3
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 3.1e-150 535.4 337 87.5
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 4.1e-150 535.0 338 87.9
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.2e-149 533.5 338 85.2
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 2.6e-149 532.3 337 87.5
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 3.4e-149 531.9 337 89.3
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.3e-148 530.0 337 86.6
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.3e-148 530.0 337 85.8
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 8.5e-148 527.3 337 87.8
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 8.5e-148 527.3 341 86.8
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.9e-147 526.2 354 84.7
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.9e-147 526.2 337 86.4
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.9e-147 526.2 337 85.8
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 2.5e-147 525.8 337 86.4
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 2.5e-147 525.8 338 87.0
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 5.5e-147 524.6 338 85.5
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 5.5e-147 524.6 337 85.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.2e-146 523.5 355 82.8
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.2e-146 523.5 355 82.8
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 2.7e-146 522.3 339 87.0
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 3.6e-146 521.9 337 87.2
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 4.7e-146 521.5 337 86.4
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 4.7e-146 521.5 337 86.4
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 6.1e-146 521.2 340 85.6
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 6.1e-146 521.2 337 86.4
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 7.9e-146 520.8 340 86.2
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.0e-145 520.4 337 86.1
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.0e-145 520.4 337 86.1
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 1.4e-145 520.0 337 85.5
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.3e-145 519.2 337 79.8
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 3.0e-145 518.8 339 86.7
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 5.1e-145 518.1 321 89.1
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.5e-144 516.5 340 85.6
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 2.6e-144 515.8 339 85.3
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 4.4e-144 515.0 367 81.2
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 7.4e-144 514.2 340 85.6
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 3.7e-143 511.9 330 88.2
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.8e-142 509.6 338 84.0
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.8e-142 509.6 338 84.0
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 4.1e-142 508.4 346 83.5
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 5.3e-142 508.1 330 86.4
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 4.5e-141 505.0 337 84.0
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 7.7e-141 504.2 354 81.6
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.0e-140 503.8 349 82.5
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 2.9e-140 502.3 359 80.5
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.5e-139 500.0 337 81.9
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 2.5e-139 499.2 347 81.0
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 2.5e-139 499.2 337 84.6
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 3.2e-139 498.8 338 83.7
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 7.2e-139 497.7 337 84.0
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 9.4e-139 497.3 377 76.9
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 9.4e-139 497.3 321 86.6
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 9.4e-139 497.3 340 80.9
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 1.2e-138 496.9 333 84.7
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.1e-138 496.1 337 78.6
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.7e-138 495.7 337 82.2
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 8.0e-138 494.2 321 85.7
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 2.8e-135 485.7 338 81.4
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 6.3e-135 484.6 368 77.2
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 8.2e-135 484.2 349 79.9
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.1e-134 481.9 337 82.5
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.2e-133 480.3 325 84.0
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.2e-133 480.3 325 84.0
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 3.5e-133 478.8 337 74.8
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.2e-131 471.9 365 76.2
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.2e-131 471.9 365 76.2
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 1.6e-130 469.9 305 88.2
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 2.1e-130 469.5 337 78.0
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.8e-126 456.4 338 78.7
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.0e-125 453.0 337 77.2
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 3.4e-120 435.6 334 78.7
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 7.5e-120 434.5 274 91.6
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 4.9e-119 431.8 284 85.2
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 3.5e-117 425.6 352 70.7
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 5.9e-117 424.9 516 54.8
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 3.0e-113 412.5 224 88.4
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.3e-107 392.5 337 71.5
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 4.3e-107 392.1 321 74.5
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 5.8e-104 381.7 255 88.6
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.7e-103 380.2 320 74.7
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.5e-96 357.1 337 66.2
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 4.4e-96 355.5 277 75.5
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 2.3e-92 343.2 337 65.0
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 3.4e-88 329.3 381 47.5
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.2e-82 310.8 330 53.3
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 4.0e-81 305.8 147 95.9
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 8.7e-68 261.5 180 72.8
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 9.9e-64 248.1 211 77.3
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 1.1e-59 234.6 326 44.5
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 6.0e-53 212.2 110 90.0
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 3.4e-48 196.4 165 70.9
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 7.4e-43 178.7 82 97.6
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.5e-40 171.0 91 92.3
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 2.5e-35 153.7 90 91.1
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.8e-33 147.5 90 85.6
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 1.5e-22 111.3 55 94.5
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 8.8e-20 102.1 64 85.9
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 4.1e-17 93.2 240 28.3
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 1.2e-16 91.7 201 27.4
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.5e-14 84.0 64 64.1
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 6.1e-13 79.3 82 80.5
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 6.1e-13 79.3 39 89.7
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.0e-11 74.3 54 66.7
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 3.7e-10 70.1 45 73.3
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 8.3e-10 68.9 30 93.3


User provided reference genes

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