Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0106500 Salix brachista HOM05D000725 ORTHO05D003141 2.3e-60 235.3 116 100.0
DCAR_003655 Daucus carota HOM05D000725 ORTHO05D003141 3.5e-16 88.6 98 49.0
Prupe.8G090000 Prunus persica HOM05D000725 ORTHO05D003141 4.5e-16 88.2 115 43.5
MBI11_g32386_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D003141 5.9e-16 87.8 98 49.0
CiPaw.06G132300 Carya illinoinensis HOM05D000725 ORTHO05D003141 7.7e-16 87.4 77 54.5
QL11p045326 Quercus lobata HOM05D000725 ORTHO05D003141 7.7e-16 87.4 67 62.7
Actinidia02233 Actinidia chinensis HOM05D000725 ORTHO05D003141 1.0e-15 87.0 98 49.0
Gohir.A13G032200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.0e-15 87.0 91 49.5
Gohir.D13G030500 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.3e-15 86.7 91 50.5
Gorai.013G034700 Gossypium raimondii HOM05D000725 ORTHO05D003141 1.3e-15 86.7 91 50.5
vmacro17455 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 1.7e-15 86.3 98 48.0
Haze_02328 Corylus avellana HOM05D000725 ORTHO05D003141 3.8e-15 85.1 77 51.9
Haze_02329 Corylus avellana HOM05D000725 ORTHO05D003141 3.8e-15 85.1 77 51.9
DCAR_028963 Daucus carota HOM05D000725 ORTHO05D003141 3.8e-15 85.1 77 51.9
Rhsim05G0070700 Rhododendron simsii HOM05D000725 ORTHO05D003141 3.8e-15 85.1 91 49.5
Actinidia11756 Actinidia chinensis HOM05D000725 ORTHO05D003141 5.0e-15 84.7 91 48.4
CSS0026816 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 5.0e-15 84.7 91 47.3
CSS0026935 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 5.0e-15 84.7 91 47.3
Haze_02322 Corylus avellana HOM05D000725 ORTHO05D003141 5.0e-15 84.7 77 51.9
GSVIVG01024225001 Vitis vinifera HOM05D000725 ORTHO05D003141 8.5e-15 84.0 71 57.7
Sed0009304 Sechium edule HOM05D000725 ORTHO05D003141 1.1e-14 83.6 77 53.2
vmacro02076 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 1.5e-14 83.2 80 51.2
CiPaw.05G070200 Carya illinoinensis HOM05D000725 ORTHO05D003141 1.9e-14 82.8 77 50.6
FvH4_2g09760 Fragaria vesca HOM05D000725 ORTHO05D003141 2.5e-14 82.4 77 50.6
FAN15G1535 Fragaria x ananassa HOM05D000725 ORTHO05D003141 2.5e-14 82.4 77 50.6
FAN24G2419 Fragaria x ananassa HOM05D000725 ORTHO05D003141 2.5e-14 82.4 77 50.6
FAN27G2965 Fragaria x ananassa HOM05D000725 ORTHO05D003141 2.5e-14 82.4 77 50.6
Aqoxy5G01538 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 3.2e-14 82.0 98 44.9
CsaV3_2G015070 Cucumis sativus L. HOM05D000725 ORTHO05D003141 3.2e-14 82.0 77 53.2
Dinv23485 Davidia involucrata HOM05D000725 ORTHO05D003141 3.2e-14 82.0 91 49.5
MD10G1068100 Malus domestica HOM05D000725 ORTHO05D003141 3.2e-14 82.0 77 49.4
Potri.009G120700 Populus trichocarpa HOM05D000725 ORTHO05D003141 3.2e-14 82.0 77 50.6
RcHm_v2.0_Chr6g0266061 Rosa chinensis HOM05D000725 ORTHO05D003141 3.2e-14 82.0 77 50.6
Sc14g0002030 Simmondsia chinensis HOM05D000725 ORTHO05D003141 4.2e-14 81.6 91 49.5
Rhsim11G0180800 Rhododendron simsii HOM05D000725 ORTHO05D003141 5.5e-14 81.3 80 48.8
ClCG11G004110 Citrullus lanatus HOM05D000725 ORTHO05D003141 7.2e-14 80.9 77 51.9
COL.COLO4_25997 Corchorus olitorius HOM05D000725 ORTHO05D003141 7.2e-14 80.9 67 61.2
MELO3C023332.2 Cucumis melo HOM05D000725 ORTHO05D003141 7.2e-14 80.9 77 51.9
DCAR_001556 Daucus carota HOM05D000725 ORTHO05D003141 9.4e-14 80.5 75 53.3
Potri.004G159000 Populus trichocarpa HOM05D000725 ORTHO05D003141 9.4e-14 80.5 77 50.6
AL4G10630 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 1.2e-13 80.1 77 50.6
AT2G21450 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 1.2e-13 80.1 77 50.6
A04p25600 Brassica napus HOM05D000725 ORTHO05D003141 1.2e-13 80.1 71 56.3
BolC4t27758H Brassica oleracea HOM05D000725 ORTHO05D003141 1.2e-13 80.1 71 56.3
CDE03G0361 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 1.2e-13 80.1 91 46.2
Manes.04G086500 Manihot esculenta HOM05D000725 ORTHO05D003141 1.2e-13 80.1 77 50.6
Sed0003616 Sechium edule HOM05D000725 ORTHO05D003141 1.2e-13 80.1 91 48.4
BcaC02g07841 Brassica carinata HOM05D000725 ORTHO05D003141 1.6e-13 79.7 71 56.3
Gohir.D12G030100 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.6e-13 79.7 98 45.9
Gorai.008G031000 Gossypium raimondii HOM05D000725 ORTHO05D003141 1.6e-13 79.7 98 45.9
Glyma.13G201800 Glycine max HOM05D000725 ORTHO05D003141 2.1e-13 79.3 77 49.4
Nn1g05795 Nelumbo nucifera HOM05D000725 ORTHO05D003141 2.1e-13 79.3 67 58.2
QL11p045293 Quercus lobata HOM05D000725 ORTHO05D003141 2.1e-13 79.3 77 48.1
Lj5A193T102 Lonicera japonica HOM05D000725 ORTHO05D003141 3.6e-13 78.6 91 48.4
MD05G1059900 Malus domestica HOM05D000725 ORTHO05D003141 3.6e-13 78.6 93 46.2
SHI05568 Sapria himalayana HOM05D000725 ORTHO05D003141 3.6e-13 78.6 73 50.7
Atru.chr5.3086 Acer truncatum HOM05D000725 ORTHO05D003141 4.7e-13 78.2 77 48.1
Manes.11G082500 Manihot esculenta HOM05D000725 ORTHO05D003141 4.7e-13 78.2 77 48.1
QL11p045305 Quercus lobata HOM05D000725 ORTHO05D003141 4.7e-13 78.2 77 49.4
Prupe.8G089900 Prunus persica HOM05D000725 ORTHO05D003141 6.1e-13 77.8 67 53.7
BraA04t18064Z Brassica rapa HOM05D000725 ORTHO05D003141 8.0e-13 77.4 71 54.9
Duzib248G0474 Durio zibethinus HOM05D000725 ORTHO05D003141 8.0e-13 77.4 77 49.4
Migut.B00205 Erythranthe guttata HOM05D000725 ORTHO05D003141 8.0e-13 77.4 67 55.2
Gohir.A12G042200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 8.0e-13 77.4 98 44.9
Lj3g0000422 Lotus japonicus HOM05D000725 ORTHO05D003141 8.0e-13 77.4 98 46.9
Lalb_Chr01g0008001 Lupinus albus HOM05D000725 ORTHO05D003141 8.0e-13 77.4 80 48.8
MSTRG.16829 Avicennia marina HOM05D000725 ORTHO05D003141 1.0e-12 77.0 67 53.7
Dinv42034 Davidia involucrata HOM05D000725 ORTHO05D003141 1.0e-12 77.0 67 58.2
Lj1g0015165 Lotus japonicus HOM05D000725 ORTHO05D003141 1.0e-12 77.0 77 49.4
Lj5g0009315 Lotus japonicus HOM05D000725 ORTHO05D003141 1.0e-12 77.0 77 49.4
Sp4g15610 Schrenkiella parvula HOM05D000725 ORTHO05D003141 1.0e-12 77.0 67 56.7
Ciclev10027795m.g Citrus clementina HOM05D000725 ORTHO05D003141 1.4e-12 76.6 88 44.3
COL.COLO4_15200 Corchorus olitorius HOM05D000725 ORTHO05D003141 1.4e-12 76.6 69 53.6
Thecc.02G079900 Theobroma cacao HOM05D000725 ORTHO05D003141 1.4e-12 76.6 67 55.2
TAR625G0592 Trochodendron aralioides HOM05D000725 ORTHO05D003141 1.4e-12 76.6 98 45.9
Lj6g0007539 Lotus japonicus HOM05D000725 ORTHO05D003141 1.8e-12 76.3 77 49.4
Lj6g0012773 Lotus japonicus HOM05D000725 ORTHO05D003141 1.8e-12 76.3 76 51.3
BcaB06g28665 Brassica carinata HOM05D000725 ORTHO05D003141 2.3e-12 75.9 71 52.1
Lalb_Chr19g0132271 Lupinus albus HOM05D000725 ORTHO05D003141 2.3e-12 75.9 67 55.2
RcHm_v2.0_Chr6g0266081 Rosa chinensis HOM05D000725 ORTHO05D003141 2.3e-12 75.9 98 43.9
Aa31LG8G13750 Aethionema arabicum HOM05D000725 ORTHO05D003141 3.0e-12 75.5 67 52.2
Lj5g0015696 Lotus japonicus HOM05D000725 ORTHO05D003141 3.0e-12 75.5 77 48.1
C04p62740 Brassica napus HOM05D000725 ORTHO05D003141 4.0e-12 75.1 71 53.5
Carub.0004s0050 Capsella rubella HOM05D000725 ORTHO05D003141 4.0e-12 75.1 67 52.2
Lj5g0003943 Lotus japonicus HOM05D000725 ORTHO05D003141 4.0e-12 75.1 74 51.4
THA.LOC104807870 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 4.0e-12 75.1 77 46.8
PSO782G2318 Papaver somniferum HOM05D000725 ORTHO05D003141 5.2e-12 74.7 67 52.2
vmacro17927 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 5.2e-12 74.7 77 48.1
CANSAT11G1287 Cannabis sativa HOM05D000725 ORTHO05D003141 6.8e-12 74.3 77 46.8
Phvul.011G210600 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 6.8e-12 74.3 77 45.5
PSO063G2790 Papaver somniferum HOM05D000725 ORTHO05D003141 8.8e-12 73.9 67 52.2
Psat7g126840 Pisum sativum HOM05D000725 ORTHO05D003141 8.8e-12 73.9 69 53.6
COL.COLO4_25996 Corchorus olitorius HOM05D000725 ORTHO05D003141 1.2e-11 73.6 69 53.6
CARHR112360 Cardamine hirsuta HOM05D000725 ORTHO05D003141 1.5e-11 73.2 98 44.9
Ah.01g019080 Amaranthus hybridus HOM05D000725 ORTHO05D003141 2.0e-11 72.8 70 52.9
EL10Ac9g21686 Beta vulgaris HOM05D000725 ORTHO05D003141 2.0e-11 72.8 91 46.2
Cc00_g19470 Coffea canephora HOM05D000725 ORTHO05D003141 2.0e-11 72.8 94 42.6
Cc02_g17200 Coffea canephora HOM05D000725 ORTHO05D003141 2.0e-11 72.8 67 52.2
Glyma.12G236100 Glycine max HOM05D000725 ORTHO05D003141 2.0e-11 72.8 77 44.2
Solyc01g109970.3 Solanum lycopersicum HOM05D000725 ORTHO05D003141 2.0e-11 72.8 67 52.2
Sopen01g052160 Solanum pennellii HOM05D000725 ORTHO05D003141 2.0e-11 72.8 67 52.2
Carub.0003s3016 Capsella rubella HOM05D000725 ORTHO05D003141 2.6e-11 72.4 67 52.2
Thhalv10022532m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 2.6e-11 72.4 67 52.2
Medtr2g437480 Medicago truncatula HOM05D000725 ORTHO05D003141 2.6e-11 72.4 67 55.2
Oeu041616.1 Olea europaea HOM05D000725 ORTHO05D003141 2.6e-11 72.4 67 52.2
VMungo1127G1148 Vigna mungo HOM05D000725 ORTHO05D003141 2.6e-11 72.4 77 46.8
Aa31LG7G15070 Aethionema arabicum HOM05D000725 ORTHO05D003141 3.4e-11 72.0 67 52.2
AT2G16390 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 3.4e-11 72.0 80 47.5
CARHR106640 Cardamine hirsuta HOM05D000725 ORTHO05D003141 3.4e-11 72.0 98 43.9
Nitab4.5_0012853g0020 Nicotiana tabacum HOM05D000725 ORTHO05D003141 3.4e-11 72.0 67 52.2
TWI79G0585 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 3.4e-11 72.0 98 43.9
Aqoxy5G01532 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 4.4e-11 71.6 98 44.9
Eucgr.G01701 Eucalyptus grandis HOM05D000725 ORTHO05D003141 4.4e-11 71.6 67 50.7
Nitab4.5_0003234g0070 Nicotiana tabacum HOM05D000725 ORTHO05D003141 4.4e-11 71.6 67 52.2
PSO731G0040 Papaver somniferum HOM05D000725 ORTHO05D003141 4.4e-11 71.6 67 55.2
PGSC0003DMG400030952 Solanum tuberosum HOM05D000725 ORTHO05D003141 4.4e-11 71.6 67 52.2
TPR.G1890 Trifolium pratense HOM05D000725 ORTHO05D003141 4.4e-11 71.6 91 45.1
TPR.G23932 Trifolium pratense HOM05D000725 ORTHO05D003141 4.4e-11 71.6 74 50.0
HPP92_022391 Vanilla planifolia HOM05D000725 ORTHO05D003141 4.4e-11 71.6 76 48.7
arahy.Tifrunner.gnm1.ann1.XRRC6E Arachis hypogaea HOM05D000725 ORTHO05D003141 5.7e-11 71.2 70 52.9
BcaB08g34646 Brassica carinata HOM05D000725 ORTHO05D003141 5.7e-11 71.2 67 50.7
BcaC01g03023 Brassica carinata HOM05D000394 ORTHO05D003141 7.5e-11 70.9 67 50.7
A03p45780 Brassica napus HOM05D000394 ORTHO05D003141 7.5e-11 70.9 67 50.7
C03p57010 Brassica napus HOM05D000394 ORTHO05D003141 7.5e-11 70.9 67 50.7
BolC3t17979H Brassica oleracea HOM05D000394 ORTHO05D003141 7.5e-11 70.9 67 50.7
BraA03t13708Z Brassica rapa HOM05D000394 ORTHO05D003141 7.5e-11 70.9 67 50.7
AUR62011279 Chenopodium quinoa HOM05D000725 ORTHO05D003141 7.5e-11 70.9 67 52.2
Thhalv10000722m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 7.5e-11 70.9 98 43.9
Peaxi162Scf00016g00426 Petunia axillaris HOM05D000725 ORTHO05D003141 7.5e-11 70.9 67 50.7
Psat4g193880 Pisum sativum HOM05D000725 ORTHO05D003141 7.5e-11 70.9 67 52.2
Hund06249 Selenicereus undatus HOM05D000725 ORTHO05D003141 7.5e-11 70.9 67 50.7
VMungo1127G0892 Vigna mungo HOM05D000725 ORTHO05D003141 7.5e-11 70.9 77 44.2
arahy.Tifrunner.gnm1.ann1.S1J40P Arachis hypogaea HOM05D000725 ORTHO05D003141 9.8e-11 70.5 70 51.4
Medtr8g037345 Medicago truncatula HOM05D000725 ORTHO05D003141 9.8e-11 70.5 88 43.2
PSO700G0205 Papaver somniferum HOM05D000725 ORTHO05D003141 9.8e-11 70.5 67 55.2
Phvul.011G210800 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 9.8e-11 70.5 77 44.2
THA.LOC104819623 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 1.3e-10 70.1 95 42.1
Ca_23901_v3 Cicer arietinum L. HOM05D000725 ORTHO05D003141 1.7e-10 69.7 67 49.3
TWI75G0750 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 1.7e-10 69.7 67 53.7
unitig_21.g20795 Utricularia gibba HOM05D000725 ORTHO05D003141 1.7e-10 69.7 70 47.1
EL10Ac9g21454 Beta vulgaris HOM05D000725 ORTHO05D003141 2.2e-10 69.3 94 46.8
Lsat_1_v5_gn_5_120421 Lactuca sativa HOM05D000725 ORTHO05D003141 2.8e-10 68.9 70 50.0
PSO832G3117 Papaver somniferum HOM05D000725 ORTHO05D003141 2.8e-10 68.9 67 49.3
RcHm_v2.0_Chr1g0330461 Rosa chinensis HOM05D000725 ORTHO05D003141 2.8e-10 68.9 67 49.3
Sp3g29660 Schrenkiella parvula HOM05D000725 ORTHO05D003141 2.8e-10 68.9 67 49.3
AUR62016778 Chenopodium quinoa HOM05D000725 ORTHO05D003141 3.7e-10 68.6 67 50.7
PGR042G3366 Punica granatum HOM05D000725 ORTHO05D003141 3.7e-10 68.6 77 45.5
CANSAT11G1508 Cannabis sativa HOM05D000725 ORTHO05D003141 4.8e-10 68.2 72 47.2
HanXRQChr03g0069371 Helianthus annuus HOM05D000725 ORTHO05D003141 6.3e-10 67.8 67 49.3
Os06g0255700 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 6.3e-10 67.8 67 47.8
Os07g0434500 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 6.3e-10 67.8 67 47.8
CAN.G1544.11 Capsicum annuum HOM05D000725 ORTHO05D003141 8.3e-10 67.4 67 49.3
AUR62013100 Chenopodium quinoa HOM05D000725 ORTHO05D003141 8.3e-10 67.4 91 42.9
ECA240G2411 Erigeron canadensis HOM05D000725 ORTHO05D003141 8.3e-10 67.4 67 49.3
HanXRQChr03g0069421 Helianthus annuus HOM05D000725 ORTHO05D003141 8.3e-10 67.4 67 49.3
AUR62010106 Chenopodium quinoa HOM05D000725 ORTHO05D003141 1.1e-09 67.0 91 42.9
SGA_v2.0_scaffold58G20498 Striga asiatica HOM05D000725 ORTHO05D003141 1.1e-09 67.0 97 40.2
Lsat_1_v5_gn_9_107821 Lactuca sativa HOM05D000725 ORTHO05D003141 1.4e-09 66.6 67 49.3
Zm00001eb173050 Zea mays HOM05D000725 ORTHO05D003141 1.4e-09 66.6 67 46.3
Zm00001eb416780 Zea mays HOM05D000725 ORTHO05D003141 1.4e-09 66.6 67 44.8
PSO210G6882 Papaver somniferum HOM05D000725 ORTHO05D003141 1.8e-09 66.2 67 47.8
Hund06399 Selenicereus undatus HOM05D000725 ORTHO05D003141 1.8e-09 66.2 77 42.9
Ah.01g009440 Amaranthus hybridus HOM05D000725 ORTHO05D003141 5.4e-09 64.7 77 42.9
PGR042G0782 Punica granatum HOM05D000725 ORTHO05D003141 5.4e-09 64.7 76 44.7
CARHR116670 Cardamine hirsuta HOM05D000725 ORTHO05D003141 7.0e-09 64.3 93 43.0
Os08g0243866 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 1.6e-08 63.2 67 43.3
ATR0665G425 Amborella trichopoda HOM05D000725 ORTHO05D003141 2.0e-08 62.8 91 40.7
HanXRQChr12g0374341 Helianthus annuus HOM05D000725 ORTHO05D003141 2.0e-08 62.8 67 47.8
AL4G16130 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 4.5e-08 61.6 67 46.3
Actinidia27876 Actinidia chinensis HOM05D000725 ORTHO05D003141 5.9e-08 61.2 70 48.6
ECA234G1026 Erigeron canadensis HOM05D000725 ORTHO05D003141 7.7e-08 60.8 67 50.7
Sabra04G0106400 Salix brachista HOM05D000725 ORTHO05D003141 1.0e-07 60.5 77 42.9
Carub.0004s0460 Capsella rubella HOM05D000725 ORTHO05D003141 3.8e-07 58.5 70 42.9
Os03g0165266 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 1.5e-06 56.6 67 40.3
Actinidia00556 Actinidia chinensis HOM05D000725 ORTHO05D003141 7.2e-06 54.3 61 47.5


User provided reference genes

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