Gene: C03p57010
General Information
Structural Information
- Species Brassica napus
- Gene Identifier C03p57010
- Transcript Identifier C03p57010
- Gene Type Coding gene
- Location C03 : 36206817-36221670 : positive
Gene Family Information
- ID HOM05D000394
- #Genes/#Species 1259/100
- Phylogenetic origin
- ID ORTHO05D003141
- #Genes/#Species 242/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid C03p57010.1_BnaDAR
- v5 BnaC03g46230D
- single_cell_id C03p57010.1-BnaDAR
- ensembl GSBRNA2T00150117001
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032776 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine | AT2G16390 |
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | AT2G16390 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT2G16390 |
| GO:0010424 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine within a CG sequence | AT2G16390 |
| GO:0071360 | ISO | PLAZA Integrative Orthology | cellular response to exogenous dsRNA | AT2G16390 |
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT2G16390 |
| GO:0060964 | ISO | PLAZA Integrative Orthology | regulation of gene silencing by miRNA | AT2G16390 |
| GO:0080188 | IEA | InterPro | gene silencing by RNA-directed DNA methylation | |
| GO:0060968 | ISO | PLAZA Integrative Orthology | regulation of gene silencing | AT2G16390 |
| GO:1900368 | ISO | PLAZA Integrative Orthology | regulation of RNA interference | AT2G16390 |
| GO:0060966 | ISO | PLAZA Integrative Orthology | regulation of gene silencing by RNA | AT2G16390 |
| GO:1900111 | ISO | PLAZA Integrative Orthology | positive regulation of histone H3-K9 dimethylation | AT2G16390 |
| GO:0070829 | ISO | PLAZA Integrative Orthology | heterochromatin maintenance | AT2G16390 |
| GO:1900370 | ISO | PLAZA Integrative Orthology | positive regulation of RNA interference | AT2G16390 |
| GO:0035563 | ISO | PLAZA Integrative Orthology | positive regulation of chromatin binding | AT2G16390 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G16390 |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity | |
| GO:0005524 | IEA | InterPro | ATP binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT2G16390 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G32330 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G16390 |
| GO:0005721 | ISO | PLAZA Integrative Orthology | pericentric heterochromatin | AT2G16390 |
| GO:0000419 | ISO | PLAZA Integrative Orthology | RNA polymerase V complex | AT2G16390 |
| GO:0090577 | ISO | PLAZA Integrative Orthology | RNA polymerase IV transcription regulator complex | AT2G16390 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR036865 | CRAL-TRIO lipid binding domain superfamily |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001251 | CRAL-TRIO lipid binding domain |
| IPR001650 | Helicase, C-terminal |
| IPR036273 | CRAL/TRIO, N-terminal domain superfamily |
| IPR011074 | CRAL/TRIO, N-terminal domain |
| IPR044567 | SNF2 domain-containing protein CLSY/DRD1 |
| IPR000330 | SNF2, N-terminal |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| Mapman id | Description |
|---|---|
| 12.5.1.14.1 | Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component DRD1 |